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Attributes like Flat can affect not only evaluation, but also operations such as pattern matching. If you give definitions or transformation rules for a function, you must be sure to have specified the attributes of the function first.
Here is a definition for the flat function f:
In[3]:= f[x_, x_] := f[x] https://wolfram.com/xid/0m5dyglvgmwz4-si8
Because f is flat, the definition is automatically applied to every subsequence of arguments:
In[4]:= f[a, a, a, b, b, b, c, c] https://wolfram.com/xid/0m5dyglvgmwz4-iw6
Out[4]= f[a, b, c]
Mathics is open-source software. Is this something you are interesting in investigating further in the source code to fix?
If not, it certainly helps me prioritize which bugs to look at by understanding what the impact is. Is this something you noticed interactively, or is this bug something that is keeping a package working? If a package it would be useful to know which package.
Following paragraph is taken from https://reference.wolfram.com/language/tutorial/EvaluationOfExpressions.html.en?source=footer
But in Mathics it was
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