- 2017-07-19 Release
commit 48d076312637419ed24dc77843b7dc84cfd33fcf Merge: 67d2257 3b74b3a Author: David Osumi-Sutherland [email protected] Date: Wed Jul 19 20:02:09 2017 +0100
Merge pull request #184 from oborel/has_ligand
Added has_ligand relation for GO
commit 3b74b3a84b6d5de73f6a323b57603e662b7ad878 Author: David Osumi-Sutherland [email protected] Date: Wed Jul 19 19:58:08 2017 +0100
Added has_ligand relation for GO
commit 67d22577131b12bfe5155c1e26b25509ce573125 Merge: 38fe841 7cfd62c Author: Chris Mungall [email protected] Date: Wed Jul 19 08:21:36 2017 -0700
Merge pull request #183 from balhoff/issue-182
Removed transitivity from 'negatively regulates'.
commit 38fe8414682c63a478a2f803b49d5d09431d2ac3 Author: David Osumi-Sutherland [email protected] Date: Wed Jul 19 16:15:51 2017 +0100
-Fixed minor typo in direct reg rel defs.
commit 7cfd62c3195d6678c9e97d27a0d62f2201a8bc36 Author: Jim Balhoff [email protected] Date: Wed Jul 19 11:09:11 2017 -0400
Removed transitivity from 'negatively regulates'.
commit 1c6eb4270e7fc050be5d04a283a4a7600e240978 Author: David Osumi-Sutherland [email protected] Date: Tue Jul 18 08:48:45 2017 +0100
Fixed duplicate rule; improved annotation rules; modified rule <enabling an MF enables its parts< to correct and make clearer.
commit 687371d56e8d8773c54eb1a1b28bdc165c200c1f Author: David Osumi-Sutherland [email protected] Date: Mon Jul 17 12:10:12 2017 +0100
Fixes #180
commit 03945add6666be02ae2329035d4e24779e7a3b6c Merge: d13b87a 58fa91c Author: Chris Mungall [email protected] Date: Fri Jun 30 15:40:27 2017 -0700
Merge pull request #179 from mbrush/daf-terms
Added relations requested for DAF spec in #149
commit 58fa91cbbdd7727faaa45e4681563a59e1077442 Author: Matthew Brush [email protected] Date: Fri Jun 30 13:30:46 2017 -0700
added relations requested for DAF spec in #149
added exacerbates condition, consition exacerbated by, condition aameliorated by, and changed label of is preventative for condition to ameliorates condition.
also made minor updates to text of definitions for causes or contributes to condition relations, as noted in #149
- 2017-06-15 Release
commit 7bf8fa406e90c8a849dd4acf65b3cd5f8b82e381 Author: Chris Mungall [email protected] Date: Mon Jun 12 08:50:53 2017 -0700
NR: realized-in-response-to
gitowl || subject: http://purl.obolibrary.org/obo/RO_0009501
gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0009501 "Marie Angelique Laporte")
gitowl || <http://purl.obolibrary.org/obo/RO_0009501> contributor "Marie Angelique Laporte"
gitowl ++ SubObjectPropertyOf(obo:RO_0009501 obo:RO_0002410)
gitowl || realized in response to SubPropertyOf causally related to
gitowl ++ Declaration(ObjectProperty(obo:RO_0009501))
gitowl || ObjectProperty: realized in response to
gitowl ++ AnnotationAssertion(obo:IAO_0000112 obo:RO_0009501 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposu
gitowl || <http://purl.obolibrary.org/obo/RO_0009501> IAO_0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response
gitowl ++ ObjectPropertyDomain(obo:RO_0009501 obo:BFO_0000017)
gitowl || realized in response to Domain BFO_0000017
gitowl ++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0009501 "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environ
gitowl || <http://purl.obolibrary.org/obo/RO_0009501> IAO_0000115 "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is a
gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0009501 "David Osumi-Sutherland")
gitowl || <http://purl.obolibrary.org/obo/RO_0009501> contributor "David Osumi-Sutherland"
gitowl ++ AnnotationAssertion(rdfs:label obo:RO_0009501 "realized in response to"@en)
gitowl || <http://purl.obolibrary.org/obo/RO_0009501> label "realized in response to"@en
gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0009501 "Chris Mungall")
gitowl || <http://purl.obolibrary.org/obo/RO_0009501> contributor "Chris Mungall"
gitowl ++ ObjectPropertyRange(obo:RO_0009501 obo:BFO_0000015)
gitowl || realized in response to Range BFO_0000015
gitowl ++ AnnotationAssertion(obo:IAO_0000112 obo:RO_0009501 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in
gitowl || <http://purl.obolibrary.org/obo/RO_0009501> IAO_0000112 "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is re
gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0009501 "Austin Meier")
gitowl || <http://purl.obolibrary.org/obo/RO_0009501> contributor "Austin Meier"
gitowl ||
gitowl || subject: NO_SUBJECT
gitowl ++ SubObjectPropertyOf(ObjectPropertyChain(obo:BFO_0000054 obo:RO_0002404) obo:RO_0009501)
gitowl || BFO_0000054 o causally downstream of SubPropertyOf realized in response to
commit 8875568e96d5a14d47a6cef8878d2580e9ab3b39 Author: Chris Mungall [email protected] Date: Mon Jun 12 08:36:12 2017 -0700
adding conditions to def of exposure stimulus
commit 9eb002127abab507340d24a6a323ec4ef1a3b596 Author: James A. Overton [email protected] Date: Tue Jun 6 14:54:09 2017 -0400
Fix typos in exposure relation definitions
commit 820c6f1af38063468bdc4d1c45ad4420f1f31de4 Author: Chris Mungall [email protected] Date: Mon Jun 5 11:50:55 2017 -0700
Added grouping class for different kinds of exposures,
using as domain for exposure relations.
See: https://github.com/Planteome/plant-environment-ontology/issues/94
commit af62b82494e441a6253aa44296c153ac3cc36f36 Author: Chris Mungall [email protected] Date: Mon Jun 5 10:52:54 2017 -0700
NRR: 'has exposure stimulus', fixes #172
gitowl || Diffing: src/ontology/ro-edit.owl
gitowl ||
gitowl || subject: http://purl.obolibrary.org/obo/RO_0002241
gitowl -- SubObjectPropertyOf(obo:RO_0002241 obo:RO_0002244)
gitowl || has exposure stressor SubPropertyOf related via exposure to
gitowl ++ SubObjectPropertyOf(obo:RO_0002241 obo:RO_0002309)
gitowl || has exposure stressor SubPropertyOf has exposure stimulus
gitowl ||
gitowl || subject: http://purl.obolibrary.org/obo/RO_0002309
gitowl ++ SubObjectPropertyOf(obo:RO_0002309 obo:RO_0002244)
gitowl || has exposure stimulus SubPropertyOf related via exposure to
gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0002309 "Chris Mungall")
gitowl || <http://purl.obolibrary.org/obo/RO_0002309> contributor "Chris Mungall"
gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0002309 "Austin Meier")
gitowl || <http://purl.obolibrary.org/obo/RO_0002309> contributor "Austin Meier"
gitowl ++ AnnotationAssertion(dc:contributor obo:RO_0002309 "Marie Angelique Laporte")
gitowl || <http://purl.obolibrary.org/obo/RO_0002309> contributor "Marie Angelique Laporte"
gitowl ++ AnnotationAssertion(rdfs:label obo:RO_0002309 "has exposure stimulus")
gitowl || <http://purl.obolibrary.org/obo/RO_0002309> label "has exposure stimulus"
gitowl ++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002309 "A relationship between an exposure event or process and any agent, stimulus, activity, or event that c
gitowl || <http://purl.obolibrary.org/obo/RO_0002309> IAO_0000115 "A relationship between an exposure event or process and any agent, stimulus, activity, or eve
gitowl ++ AnnotationAssertion(oboInOwl:creation_date obo:RO_0002309 "2017-06-05T17:35:04Z"^^xsd:dateTime)
gitowl || <http://purl.obolibrary.org/obo/RO_0002309> creation_date "2017-06-05T17:35:04Z"^^dateTime
gitowl ++ Declaration(ObjectProperty(obo:RO_0002309))
gitowl || ObjectProperty: has exposure stimulus
gitowl ++ AnnotationAssertion(oboInOwl:created_by obo:RO_0002309 "cjm"^^xsd:string)
gitowl || <http://purl.obolibrary.org/obo/RO_0002309> created_by "cjm"^^string
- 2017-05-29 Release
commit https://github.com/oborel/obo-relations/commit/dd541eb02d08ab6e8a72c2c7fbcbe5db237fe444 Author: Chris Mungall [email protected] Date: 2017-05-29 11:26:56 -0700
Temporarily weakening domain of has-developmental-contribution-from to be an IC.
While this can be justified, it leads to violations across most AOs including Uberon
right now.
We can explore adding in future, this may involve distinguishing between true
developmental lineages (continuity of cells) and a weaker sense of tracing
continuity between parts of ICs in general (eg one lumen forming from two predecessors
when a membrane disappears)
See https://github.com/obophenotype/uberon/issues/1324
Inn this commit I also strengthen the grouping relation to only
apply between continuants
commit https://github.com/oborel/obo-relations/commit/64f00b3cfce967ac2334ec70412f9a00cb363b28 Merge: a7f710f 8a322a5 Author: Chris Mungall [email protected] Date: 2017-05-29 11:17:56 -0700
Merge pull request #162 from oborel/mf_reg_component_relations
First draft of reg component relations for GO MF refactoring
commit https://github.com/oborel/obo-relations/commit/0c26411ac08e4d8828bf3c65c2f377bb6f839c2c Author: Damion Dooley [email protected] Date: 2017-05-26 19:23:56 -0700
definition change, added 1 relation
substance removed definition change;
has primary substance added relation
commit https://github.com/oborel/obo-relations/commit/ebe9c8536aa334cc151556a41e5116f4e5ded427 Author: Damion Dooley [email protected] Date: 2017-05-26 16:25:27 -0700
foodon relations
Adding relations: has consumer, immersed in, has substance added, has
primary substance added.
commit https://github.com/oborel/obo-relations/commit/8a322a5445e91f530ea2700f4604cca7ce81073f Author: David Osumi-Sutherland [email protected] Date: 2017-05-24 11:59:32 +0100
First draft of reg component relations for GO MF refactoring
commit https://github.com/oborel/obo-relations/commit/4696eb550162787916d34005d49d8359827491de Author: David Osumi-Sutherland [email protected] Date: 2017-05-11 11:27:23 +0100
Fixed erroneous typing of RO_0002222 and BFO_0000063 as APs
and removed subAP assertion connecting them. Not clear where this came from.
commit https://github.com/oborel/obo-relations/commit/70aa2792ff6e0a58ee2f6868ea533199aae5d23c Author: David Osumi-Sutherland [email protected] Date: 2017-05-10 14:04:15 +0100
New, more readable relation definitions for regulates releations in RO
|| Diffing: ro.owl
-- OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro.owl>) VersionIRI(<http://purl.obolibrary.org/obo/ro/releases/2017-04-11/ro.owl>))
++ OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro.owl>) VersionIRI(<http://purl.obolibrary.org/obo/ro/releases/2017-05-29/ro.owl>))
||
|| subject: http://purl.obolibrary.org/obo/BFO_0000063
-- SubAnnotationPropertyOf(obo:BFO_0000063 obo:RO_0002222)
|| BFO_0000063 SubPropertyOf RO_0002222
++ SubObjectPropertyOf(obo:BFO_0000063 obo:RO_0002222)
|| BFO_0000063 SubPropertyOf RO_0002222
||
|| subject: http://purl.obolibrary.org/obo/GO_0005634
++ Declaration(Class(obo:GO_0005634))
|| Class: GO_0005634
||
|| subject: http://purl.obolibrary.org/obo/R0_0009004
++ AnnotationAssertion(obo:IAO_0000114 obo:R0_0009004 obo:IAO_0000428)
|| <http://purl.obolibrary.org/obo/R0_0009004> IAO_0000114 <http://purl.obolibrary.org/obo/IAO_0000428>
++ AnnotationAssertion(obo:IAO_0000115 obo:R0_0009004 "'has consumer' is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect."@en)
|| <http://purl.obolibrary.org/obo/R0_0009004> IAO_0000115 "'has consumer' is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect."@en
++ AnnotationAssertion(obo:IAO_0000117 obo:R0_0009004 "Damion Dooley")
|| <http://purl.obolibrary.org/obo/R0_0009004> IAO_0000117 "Damion Dooley"
++ AnnotationAssertion(rdfs:label obo:R0_0009004 "has consumer"@en)
|| <http://purl.obolibrary.org/obo/R0_0009004> label "has consumer"@en
++ AnnotationAssertion(obo:IAO_0000112 obo:R0_0009004 "sardine has consumer some homo sapiens"@en)
|| <http://purl.obolibrary.org/obo/R0_0009004> IAO_0000112 "sardine has consumer some homo sapiens"@en
++ Declaration(ObjectProperty(obo:R0_0009004))
|| ObjectProperty: has consumer
||
|| subject: http://purl.obolibrary.org/obo/RO_0002013
++ AnnotationAssertion(oboInOwl:created_by obo:RO_0002013 "dos"^^xsd:string)
|| <http://purl.obolibrary.org/obo/RO_0002013> created_by "dos"^^string
++ AnnotationAssertion(oboInOwl:creation_date obo:RO_0002013 "2017-05-24T09:30:46Z"^^xsd:dateTime)
|| <http://purl.obolibrary.org/obo/RO_0002013> creation_date "2017-05-24T09:30:46Z"^^dateTime
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002013 "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.")
|| <http://purl.obolibrary.org/obo/RO_0002013> IAO_0000115 "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B."
++ AnnotationAssertion(rdfs:label obo:RO_0002013 "has regulatory component activity")
|| <http://purl.obolibrary.org/obo/RO_0002013> label "has regulatory component activity"
++ Declaration(ObjectProperty(obo:RO_0002013))
|| ObjectProperty: has regulatory component activity
++ SubObjectPropertyOf(obo:RO_0002013 obo:RO_0002017)
|| has regulatory component activity SubPropertyOf has component activity
++ SubObjectPropertyOf(obo:RO_0002013 obo:RO_0002334)
|| has regulatory component activity SubPropertyOf regulated by
||
|| subject: http://purl.obolibrary.org/obo/RO_0002014
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002014 "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.")
|| <http://purl.obolibrary.org/obo/RO_0002014> IAO_0000115 "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B."
++ AnnotationAssertion(oboInOwl:created_by obo:RO_0002014 "dos"^^xsd:string)
|| <http://purl.obolibrary.org/obo/RO_0002014> created_by "dos"^^string
++ SubObjectPropertyOf(obo:RO_0002014 obo:RO_0002335)
|| has negative regulatory component activity SubPropertyOf negatively regulated by
++ AnnotationAssertion(rdfs:label obo:RO_0002014 "has negative regulatory component activity")
|| <http://purl.obolibrary.org/obo/RO_0002014> label "has negative regulatory component activity"
++ SubObjectPropertyOf(obo:RO_0002014 obo:RO_0002013)
|| has negative regulatory component activity SubPropertyOf has regulatory component activity
++ AnnotationAssertion(oboInOwl:creation_date obo:RO_0002014 "2017-05-24T09:31:01Z"^^xsd:dateTime)
|| <http://purl.obolibrary.org/obo/RO_0002014> creation_date "2017-05-24T09:31:01Z"^^dateTime
++ AnnotationAssertion(rdfs:comment obo:RO_0002014 "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.")
|| <http://purl.obolibrary.org/obo/RO_0002014> comment "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'."
++ Declaration(ObjectProperty(obo:RO_0002014))
|| ObjectProperty: has negative regulatory component activity
||
|| subject: http://purl.obolibrary.org/obo/RO_0002015
++ AnnotationAssertion(rdfs:label obo:RO_0002015 "has positive regulatory component activity")
|| <http://purl.obolibrary.org/obo/RO_0002015> label "has positive regulatory component activity"
++ Declaration(ObjectProperty(obo:RO_0002015))
|| ObjectProperty: has positive regulatory component activity
++ SubObjectPropertyOf(obo:RO_0002015 obo:RO_0002013)
|| has positive regulatory component activity SubPropertyOf has regulatory component activity
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002015 "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.")
|| <http://purl.obolibrary.org/obo/RO_0002015> IAO_0000115 "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B."
++ AnnotationAssertion(oboInOwl:creation_date obo:RO_0002015 "2017-05-24T09:31:17Z"^^xsd:dateTime)
|| <http://purl.obolibrary.org/obo/RO_0002015> creation_date "2017-05-24T09:31:17Z"^^dateTime
++ AnnotationAssertion(oboInOwl:created_by obo:RO_0002015 "dos"^^xsd:string)
|| <http://purl.obolibrary.org/obo/RO_0002015> created_by "dos"^^string
++ AnnotationAssertion(rdfs:comment obo:RO_0002015 "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.")
|| <http://purl.obolibrary.org/obo/RO_0002015> comment "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'."
++ SubObjectPropertyOf(obo:RO_0002015 obo:RO_0002336)
|| has positive regulatory component activity SubPropertyOf positively regulated by
||
|| subject: http://purl.obolibrary.org/obo/RO_0002016
++ AnnotationAssertion(oboInOwl:created_by obo:RO_0002016 "dos"^^xsd:string)
|| <http://purl.obolibrary.org/obo/RO_0002016> created_by "dos"^^string
++ SubObjectPropertyOf(obo:RO_0002016 obo:RO_0002336)
|| has necessary component activity SubPropertyOf positively regulated by
++ AnnotationAssertion(rdfs:label obo:RO_0002016 "has necessary component activity")
|| <http://purl.obolibrary.org/obo/RO_0002016> label "has necessary component activity"
++ AnnotationAssertion(rdfs:comment obo:RO_0002016 "A has necessary component activity B if A and B are GO molecular functions (GO_0003674), A has_component B and B is necessary for A. For example, ATPase coupled transporter activity has necessary component ATPase activity; transcript factor activity has necessary component DNA binding activity.")
|| <http://purl.obolibrary.org/obo/RO_0002016> comment "A has necessary component activity B if A and B are GO molecular functions (GO_0003674), A has_component B and B is necessary for A. For example, ATPase coupled transporter activity has necessary component ATPase activity; transcript factor activity has necessary component DNA binding activity."
++ SubObjectPropertyOf(obo:RO_0002016 obo:RO_0002017)
|| has necessary component activity SubPropertyOf has component activity
++ Declaration(ObjectProperty(obo:RO_0002016))
|| ObjectProperty: has necessary component activity
++ AnnotationAssertion(oboInOwl:creation_date obo:RO_0002016 "2017-05-24T09:36:08Z"^^xsd:dateTime)
|| <http://purl.obolibrary.org/obo/RO_0002016> creation_date "2017-05-24T09:36:08Z"^^dateTime
||
|| subject: http://purl.obolibrary.org/obo/RO_0002017
++ AnnotationAssertion(rdfs:label obo:RO_0002017 "has component activity")
|| <http://purl.obolibrary.org/obo/RO_0002017> label "has component activity"
++ SubObjectPropertyOf(obo:RO_0002017 obo:RO_0002018)
|| has component activity SubPropertyOf has component process
++ AnnotationAssertion(oboInOwl:creation_date obo:RO_0002017 "2017-05-24T09:44:33Z"^^xsd:dateTime)
|| <http://purl.obolibrary.org/obo/RO_0002017> creation_date "2017-05-24T09:44:33Z"^^dateTime
++ AnnotationAssertion(rdfs:comment obo:RO_0002017 "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.")
|| <http://purl.obolibrary.org/obo/RO_0002017> comment "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B."
++ AnnotationAssertion(oboInOwl:created_by obo:RO_0002017 "dos"^^xsd:string)
|| <http://purl.obolibrary.org/obo/RO_0002017> created_by "dos"^^string
++ Declaration(ObjectProperty(obo:RO_0002017))
|| ObjectProperty: has component activity
||
|| subject: http://purl.obolibrary.org/obo/RO_0002018
++ Declaration(ObjectProperty(obo:RO_0002018))
|| ObjectProperty: has component process
++ AnnotationAssertion(rdfs:label obo:RO_0002018 "has component process")
|| <http://purl.obolibrary.org/obo/RO_0002018> label "has component process"
++ SubObjectPropertyOf(obo:RO_0002018 obo:RO_0002180)
|| has component process SubPropertyOf has component
++ AnnotationAssertion(oboInOwl:creation_date obo:RO_0002018 "2017-05-24T09:49:21Z"^^xsd:dateTime)
|| <http://purl.obolibrary.org/obo/RO_0002018> creation_date "2017-05-24T09:49:21Z"^^dateTime
++ AnnotationAssertion(oboInOwl:created_by obo:RO_0002018 "dos"^^xsd:string)
|| <http://purl.obolibrary.org/obo/RO_0002018> created_by "dos"^^string
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002018 "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.")
|| <http://purl.obolibrary.org/obo/RO_0002018> IAO_0000115 "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type."
||
|| subject: http://purl.obolibrary.org/obo/RO_0002211
-- AnnotationAssertion(obo:IAO_0000115 obo:RO_0002211 "x regulates y if and only if the x is the realization of a function to exert an effect on the frequency, rate or extent of y")
|| <http://purl.obolibrary.org/obo/RO_0002211> IAO_0000115 "x regulates y if and only if the x is the realization of a function to exert an effect on the frequency, rate or extent of y"
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002211 "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.")
|| <http://purl.obolibrary.org/obo/RO_0002211> IAO_0000115 "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2."
||
|| subject: http://purl.obolibrary.org/obo/RO_0002212
-- AnnotationAssertion(obo:IAO_0000115 obo:RO_0002212 "x negatively regulates y if and only if the progression of x reduces the frequency, rate or extent of y")
|| <http://purl.obolibrary.org/obo/RO_0002212> IAO_0000115 "x negatively regulates y if and only if the progression of x reduces the frequency, rate or extent of y"
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002212 "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.")
|| <http://purl.obolibrary.org/obo/RO_0002212> IAO_0000115 "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2."
||
|| subject: http://purl.obolibrary.org/obo/RO_0002213
-- AnnotationAssertion(obo:IAO_0000115 obo:RO_0002213 "x positively regulates y if and only if the progression of x increases the frequency, rate or extent of y")
|| <http://purl.obolibrary.org/obo/RO_0002213> IAO_0000115 "x positively regulates y if and only if the progression of x increases the frequency, rate or extent of y"
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002213 "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.")
|| <http://purl.obolibrary.org/obo/RO_0002213> IAO_0000115 "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2."
||
|| subject: http://purl.obolibrary.org/obo/RO_0002222
++ Declaration(ObjectProperty(obo:RO_0002222))
|| ObjectProperty: RO_0002222
||
|| subject: http://purl.obolibrary.org/obo/RO_0002254
-- ObjectPropertyDomain(obo:RO_0002254 obo:CARO_0000003)
|| has developmental contribution from Domain anatomical structure
++ ObjectPropertyDomain(obo:RO_0002254 obo:BFO_0000004)
|| has developmental contribution from Domain BFO_0000004
||
|| subject: http://purl.obolibrary.org/obo/RO_0002258
++ ObjectPropertyDomain(obo:RO_0002258 obo:BFO_0000002)
|| developmentally preceded by Domain BFO_0000002
++ ObjectPropertyRange(obo:RO_0002258 obo:BFO_0000002)
|| developmentally preceded by Range BFO_0000002
||
|| subject: http://purl.obolibrary.org/obo/RO_0002578
-- AnnotationAssertion(obo:IAO_0000115 obo:RO_0002578 "p 'directly regulates' q if and only if p and q are processes, and p regulates q, and q directly follows from p")
|| <http://purl.obolibrary.org/obo/RO_0002578> IAO_0000115 "p 'directly regulates' q if and only if p and q are processes, and p regulates q, and q directly follows from p"
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002578 "Proceess(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.")
|| <http://purl.obolibrary.org/obo/RO_0002578> IAO_0000115 "Proceess(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2."
||
|| subject: http://purl.obolibrary.org/obo/RO_0002629
-- AnnotationAssertion(obo:IAO_0000115 obo:RO_0002629 "p 'directly positively regulates' q if and only if p and q are processes, and p positively regulates q, and q directly follows from p")
|| <http://purl.obolibrary.org/obo/RO_0002629> IAO_0000115 "p 'directly positively regulates' q if and only if p and q are processes, and p positively regulates q, and q directly follows from p"
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002629 "Proceess(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.")
|| <http://purl.obolibrary.org/obo/RO_0002629> IAO_0000115 "Proceess(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2."
||
|| subject: http://purl.obolibrary.org/obo/RO_0002630
-- AnnotationAssertion(obo:IAO_0000115 obo:RO_0002630 "p 'directly negatively regulates' q if and only if p and q are processes, and p negatively regulates q, and q directly follows from p")
|| <http://purl.obolibrary.org/obo/RO_0002630> IAO_0000115 "p 'directly negatively regulates' q if and only if p and q are processes, and p negatively regulates q, and q directly follows from p"
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0002630 "Proceess(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.")
|| <http://purl.obolibrary.org/obo/RO_0002630> IAO_0000115 "Proceess(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2."
||
|| subject: http://purl.obolibrary.org/obo/RO_0009001
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0009001 "\"has substance added\" is a relation existing between a (physical) entity and a substance in which the entity has had the substance added to it at some point in time."@en)
|| <http://purl.obolibrary.org/obo/RO_0009001> IAO_0000115 "\"has substance added\" is a relation existing between a (physical) entity and a substance in which the entity has had the substance added to it at some point in time."@en
++ IrreflexiveObjectProperty(obo:RO_0009001)
|| Irreflexive: has substance added
++ AnnotationAssertion(obo:IAO_0000116 obo:RO_0009001 "The relation X 'has substance added' some Y doesn't imply that X still has Y in any detectable fashion subsequent to the addition. Water in dehydrated food or ice cubes are examples, as is food that undergoes chemical transformation. This definition should encompass recipe ingredients."@en)
|| <http://purl.obolibrary.org/obo/RO_0009001> IAO_0000116 "The relation X 'has substance added' some Y doesn't imply that X still has Y in any detectable fashion subsequent to the addition. Water in dehydrated food or ice cubes are examples, as is food that undergoes chemical transformation. This definition should encompass recipe ingredients."@en
++ Declaration(ObjectProperty(obo:RO_0009001))
|| ObjectProperty: has substance added
++ AnnotationAssertion(obo:IAO_0000117 obo:RO_0009001 "Damion Dooley")
|| <http://purl.obolibrary.org/obo/RO_0009001> IAO_0000117 "Damion Dooley"
++ AnnotationAssertion(obo:IAO_0000114 obo:RO_0009001 obo:IAO_0000428)
|| <http://purl.obolibrary.org/obo/RO_0009001> IAO_0000114 <http://purl.obolibrary.org/obo/IAO_0000428>
++ AnnotationAssertion(obo:IAO_0000112 obo:RO_0009001 "muffin 'has substance added' some 'baking soda'"@en)
|| <http://purl.obolibrary.org/obo/RO_0009001> IAO_0000112 "muffin 'has substance added' some 'baking soda'"@en
++ AnnotationAssertion(rdfs:label obo:RO_0009001 "has substance added"@en)
|| <http://purl.obolibrary.org/obo/RO_0009001> label "has substance added"@en
||
|| subject: http://purl.obolibrary.org/obo/RO_0009002
++ AnnotationAssertion(obo:IAO_0000112 obo:RO_0009002 "'egg white' 'has substance removed' some 'egg yolk'"@en)
|| <http://purl.obolibrary.org/obo/RO_0009002> IAO_0000112 "'egg white' 'has substance removed' some 'egg yolk'"@en
++ Declaration(ObjectProperty(obo:RO_0009002))
|| ObjectProperty: has substance removed
++ AnnotationAssertion(obo:IAO_0000114 obo:RO_0009002 obo:IAO_0000428)
|| <http://purl.obolibrary.org/obo/RO_0009002> IAO_0000114 <http://purl.obolibrary.org/obo/IAO_0000428>
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0009002 "\"has substance removed\" is a relation existing between two physical entities in which the first entity has had the second entity (a substance) removed from it at some point in time."@en)
|| <http://purl.obolibrary.org/obo/RO_0009002> IAO_0000115 "\"has substance removed\" is a relation existing between two physical entities in which the first entity has had the second entity (a substance) removed from it at some point in time."@en
++ AnnotationAssertion(obo:IAO_0000117 obo:RO_0009002 "Damion Dooley"@en)
|| <http://purl.obolibrary.org/obo/RO_0009002> IAO_0000117 "Damion Dooley"@en
++ AnnotationAssertion(rdfs:label obo:RO_0009002 "has substance removed"@en)
|| <http://purl.obolibrary.org/obo/RO_0009002> label "has substance removed"@en
++ IrreflexiveObjectProperty(obo:RO_0009002)
|| Irreflexive: has substance removed
||
|| subject: http://purl.obolibrary.org/obo/RO_0009003
++ AnnotationAssertion(obo:IAO_0000117 obo:RO_0009003 "Damion Dooley")
|| <http://purl.obolibrary.org/obo/RO_0009003> IAO_0000117 "Damion Dooley"
++ AnnotationAssertion(obo:IAO_0000114 obo:RO_0009003 obo:IAO_0000428)
|| <http://purl.obolibrary.org/obo/RO_0009003> IAO_0000114 <http://purl.obolibrary.org/obo/IAO_0000428>
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0009003 "\"immersed in\" is a relation between a (physical) entity and a fluid substance in which the entity is wholely or substantially surrounded by the substance."@en)
|| <http://purl.obolibrary.org/obo/RO_0009003> IAO_0000115 "\"immersed in\" is a relation between a (physical) entity and a fluid substance in which the entity is wholely or substantially surrounded by the substance."@en
++ AnnotationAssertion(rdfs:label obo:RO_0009003 "immersed in"@en)
|| <http://purl.obolibrary.org/obo/RO_0009003> label "immersed in"@en
++ Declaration(ObjectProperty(obo:RO_0009003))
|| ObjectProperty: immersed in
++ IrreflexiveObjectProperty(obo:RO_0009003)
|| Irreflexive: immersed in
++ AnnotationAssertion(obo:IAO_0000112 obo:RO_0009003 "sardines 'immersed in' some 'oil and mustard'"@en)
|| <http://purl.obolibrary.org/obo/RO_0009003> IAO_0000112 "sardines 'immersed in' some 'oil and mustard'"@en
||
|| subject: http://purl.obolibrary.org/obo/RO_0009005
++ Declaration(ObjectProperty(obo:RO_0009005))
|| ObjectProperty: has primary substance added
++ SubObjectPropertyOf(obo:RO_0009005 obo:RO_0009001)
|| has primary substance added SubPropertyOf has substance added
++ AnnotationAssertion(rdfs:label obo:RO_0009005 "has primary substance added"@en)
|| <http://purl.obolibrary.org/obo/RO_0009005> label "has primary substance added"@en
++ AnnotationAssertion(obo:IAO_0000112 obo:RO_0009005 "bread 'has primary substance added' some 'flour'"@en)
|| <http://purl.obolibrary.org/obo/RO_0009005> IAO_0000112 "bread 'has primary substance added' some 'flour'"@en
++ AnnotationAssertion(obo:IAO_0000115 obo:RO_0009005 "'has primary substance added' indicates that an entity has had the given substance added to it in a proportion greater than any other added substance."@en)
|| <http://purl.obolibrary.org/obo/RO_0009005> IAO_0000115 "'has primary substance added' indicates that an entity has had the given substance added to it in a proportion greater than any other added substance."@en
++ AnnotationAssertion(obo:IAO_0000117 obo:RO_0009005 "Damion Dooley")
|| <http://purl.obolibrary.org/obo/RO_0009005> IAO_0000117 "Damion Dooley"
++ AnnotationAssertion(obo:IAO_0000114 obo:RO_0009005 obo:IAO_0000428)
|| <http://purl.obolibrary.org/obo/RO_0009005> IAO_0000114 <http://purl.obolibrary.org/obo/IAO_0000428>
++ IrreflexiveObjectProperty(obo:RO_0009005)
|| Irreflexive: has primary substance added
||
|| subject: http://www.geneontology.org/formats/oboInOwl#created_by
++ Declaration(AnnotationProperty(oboInOwl:created_by))
|| AnnotationProperty: created_by
||
|| subject: http://www.geneontology.org/formats/oboInOwl#creation_date
++ Declaration(AnnotationProperty(oboInOwl:creation_date))
|| AnnotationProperty: creation_date
||
|| subject: NO_SUBJECT
++ SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002327 obo:RO_0002017) obo:RO_0002327)
|| enables o has component activity SubPropertyOf enables