From 47fefaf966e9fcbbc85cc7aae2285a75671336df Mon Sep 17 00:00:00 2001
From: farchaab <farid.chaabane@chuv.ch>
Date: Tue, 20 Aug 2024 16:50:12 +0200
Subject: [PATCH] seperate macos and linux tests

---
 .../{unit-tests.yml => linux-tests.yml}       |  5 +-
 .github/workflows/macos-tests.yml             | 60 +++++++++++++++++++
 2 files changed, 62 insertions(+), 3 deletions(-)
 rename .github/workflows/{unit-tests.yml => linux-tests.yml} (94%)
 create mode 100644 .github/workflows/macos-tests.yml

diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/linux-tests.yml
similarity index 94%
rename from .github/workflows/unit-tests.yml
rename to .github/workflows/linux-tests.yml
index 673d38b..f9174c5 100644
--- a/.github/workflows/unit-tests.yml
+++ b/.github/workflows/linux-tests.yml
@@ -1,4 +1,4 @@
-name: Tests
+name: Linux tests
 
 on:
   push:
@@ -31,9 +31,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [macos-latest, ubuntu-latest]
+        os: [ubuntu-latest]
         python-version: ["3.12"]
-        architecture: ["x64"]
 
     steps:
       - uses: "actions/checkout@v3"
diff --git a/.github/workflows/macos-tests.yml b/.github/workflows/macos-tests.yml
new file mode 100644
index 0000000..45c8174
--- /dev/null
+++ b/.github/workflows/macos-tests.yml
@@ -0,0 +1,60 @@
+name: Macos tests
+
+on:
+  push:
+    branches: ["main"]
+    paths:
+      - ".github/workflows/unit-tests.yaml"
+      - "tests/**"
+      - "assembly_finder/**"
+      - "setup.py"
+  pull_request:
+    branches: ["main"]
+    paths:
+      - ".github/workflows/unit-tests.yaml"
+      - "tests/**"
+      - "assembly_finder/**"
+      - "setup.py"
+
+permissions:
+  contents: read
+
+jobs:
+  tests:
+    name: "Python ${{ matrix.python-version }} on ${{ matrix.os }}"
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+      run:
+        shell: bash -el {0}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [macos-14]
+        python-version: ["3.12"]
+
+    steps:
+      - uses: "actions/checkout@v4"
+        with:
+          fetch-depth: 0
+
+      - uses: conda-incubator/setup-miniconda@v3
+        with:
+          auto-update-conda: true
+          miniforge-version: "latest"
+          miniforge-variant: Miniforge3
+          use-mamba: true
+          mamba-version: "*"
+          channels: conda-forge,bioconda,defaults
+          channel-priority: strict
+          activate-environment: assembly_finder
+          python-version: ${{ matrix.python-version }}
+          auto-activate-base: false
+
+      - name: "Test and generate coverage report on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install pytest coverage
+          python -m pip install .
+          coverage run -m pytest