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(pyinseq) naseersangwan@Naseers-MBP Bt_5951 % pyinseq -i GTAC-134320-RG_1.HL2C3DSX5_CCGCGGTTAT-ACAGCGCTAG_L002_R1.fastq -s bla.txt -g PROKKA_09032022.gbk -e BLA
2023-03-01 20:02 - INFO - pyinseq - Process command line arguments
2023-03-01 20:02 - INFO - utils - Writing configuration file from provided arguments
2023-03-01 20:02 - INFO - utils - Directory BLA already exists. Snakemake will create files that are missing.
2023-03-01 20:02 - INFO - pyinseq - Workflow selected: pyinseq
2023-03-01 20:02 - INFO - pyinseq - ***** BEGIN PYINSEQ WORKFLOW *****
(SNAKEMAKE INFO)
(SNAKEMAKE INFO)
2023-03-01 20:02 - INFO - demultiplex - Preparing to demultiplex reads
Error in job demultiplex while creating output files results/BLA/raw_data/Sample_1.fastq, results/BLA/Sample_1_trimmed.fastq.
RuleException:
Warning in line 84 of /Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/pyinseq/workflows/PyinseqWorkflow/Snakefile:
Unknown argument(s): {'colour': 'green'}
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/pyinseq/workflows/PyinseqWorkflow/Snakefile", line 84, in __rule_demultiplex
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/pyinseq/demultiplex.py", line 62, in demultiplex_fastq
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/pyinseq/logger.py", line 78, in init
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/tqdm-4.7.2-py3.6.egg/tqdm/_tqdm.py", line 427, in init
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/concurrent/futures/thread.py", line 56, in run
Exiting because a job execution failed. Look above for error message
Exiting because a job execution failed. Look above for error message
2023-03-01 20:02 - INFO - pyinseq - ***** PYINSEQ WORKFLOW FINISHED *****
The text was updated successfully, but these errors were encountered:
(pyinseq) naseersangwan@Naseers-MBP Bt_5951 % pyinseq -i GTAC-134320-RG_1.HL2C3DSX5_CCGCGGTTAT-ACAGCGCTAG_L002_R1.fastq -s bla.txt -g PROKKA_09032022.gbk -e BLA
2023-03-01 20:02 - INFO - pyinseq - Process command line arguments
2023-03-01 20:02 - INFO - utils - Writing configuration file from provided arguments
2023-03-01 20:02 - INFO - utils - Directory BLA already exists. Snakemake will create files that are missing.
2023-03-01 20:02 - INFO - pyinseq - Workflow selected: pyinseq
2023-03-01 20:02 - INFO - pyinseq - ***** BEGIN PYINSEQ WORKFLOW *****
(SNAKEMAKE INFO)
(SNAKEMAKE INFO)
2023-03-01 20:02 - INFO - demultiplex - Preparing to demultiplex reads
Error in job demultiplex while creating output files results/BLA/raw_data/Sample_1.fastq, results/BLA/Sample_1_trimmed.fastq.
RuleException:
Warning in line 84 of /Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/pyinseq/workflows/PyinseqWorkflow/Snakefile:
Unknown argument(s): {'colour': 'green'}
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/pyinseq/workflows/PyinseqWorkflow/Snakefile", line 84, in __rule_demultiplex
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/pyinseq/demultiplex.py", line 62, in demultiplex_fastq
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/pyinseq/logger.py", line 78, in init
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/site-packages/tqdm-4.7.2-py3.6.egg/tqdm/_tqdm.py", line 427, in init
File "/Users/naseersangwan/Desktop/Conda/envs/pyinseq/lib/python3.6/concurrent/futures/thread.py", line 56, in run
Exiting because a job execution failed. Look above for error message
Exiting because a job execution failed. Look above for error message
2023-03-01 20:02 - INFO - pyinseq - ***** PYINSEQ WORKFLOW FINISHED *****
The text was updated successfully, but these errors were encountered: