Migration from monarch-app to monarch-ui

[monicacecilia]

This super monitors migration of content from monarch-app to monarch-ui

• Answer the question 'Move?' to denote whether or not the page is being migrated from monarch-app (old site) to the monarch-ui (new site).
• For each entry, toggle tick after all tickets have been closed.

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This list is a work in progress, and it is frequently updated.

• Linkout to GitHub Organization
  • Move?: yes
  • New path in monarch-ui: linkout to GH page (https://github.com/monarch-initiative) under About top-level menu.
• Phenotype ontologies project - uPheno
  • Move?: yes
  • Ticket: Update Documentation menu items #154
  • New path in monarch-ui: from the Documentation top level menu, link menu item 'Phenotype Ontologies Project' out to https://github.com/obophenotype/upheno
• Monarch Services and API
  • Move?: Yes.
  • Ticket: Add Monarch Services page #152 (was Add and update pages on: publications, link to us #107)
  • New path in monarch-ui: monarchinitiative.org/about/monarchservices
• Monarch Team https://monarchinitiative.org/page/team
  • Move?: yes
  • Ticket: Update Monarch Team page #153
  • New path in monarch-ui: monarchinitiative.org/about/team
• About https://monarchinitiative.org/page/about
  • Move?: yes
  • Ticket: Update the About Monarch page #135, Update the Home page #65, Add and update pages on: publications, link to us #107
  • New path in monarch-ui: monarchinitiative.org/about/monarch
• Monarch Disclaimer https://monarchinitiative.org/page/disclaimer
  • Move?: yes
  • Ticket: Create new page for Disclaimer #184
  • New path in monarch-ui: same --> monarchinitiative.org/page/disclaimer
• Data Sources https://monarchinitiative.org/about/sources
  • Move?: yes
  • Ticket: Update Data Sources page, display metadata about load & version. #58
  • New path in monarch-ui: monarchinitiative.org/sources
• Monarch releases https://monarchinitiative.org/page/releases
  • Move?: Not in its current state. Instead, include in work being done for Update Data Sources page, display metadata about load & version. #58.
  • Ticket: Update Data Sources page, display metadata about load & version. #58
  • New path in monarch-ui: monarchinitiative.org/sources
• Monarch patient pages with UDP (de-identified). e.g. https://monarchinitiative.org/case/:MONARCH:c000017
  • Move?: yes
  • Ticket: UDP/Patient pages on the new site #199. Closed on 2019-10-31 by @kshefchek
  • New path in monarch-ui: same.
• Phenotype Curation Guidelines:
  • Linkout to Monarch Phenotype curation guidelines blog. http://monarch-initiative.blogspot.com/2015/01/how-to-annotate-patients-phenotypic.html
    • Move?: Yes, for v1.0. It will need to be updated after v1.0 release.
    • Ticket: Update Documentation menu items #154 - approved to keep old blog post.
  • [ ] On 2019-08-21, @mellybelly and @pnrobinson requested changes. Punting to v1.1
    • Ticket: Create a new Phenotype Curation Guidelines page #174
    • New path in monarch-ui: monarchinitiative.org/documenatation/curationguidelines
• [ ] Monarch Phenotype Grid Widget Examples https://monarchinitiative.org/page/phenogrid
  • Move?: NO. Replace with new Phenogrid displays on different pages.
  • Ticket: Add phenogrid to any entity associated with a list of phenotypes #104, Better integrate phenotype set analyses within site monarch-app#822, Update Phenogrid: remove jquery UI code, replace with vanilla es6 or vue #129, Update Phenogird: 2 panel-display #130, Update Phenogrid: auto-update #131. Work to be completed for Monarch-UI v1.1 milestone.
  • New path in monarch-ui: not applicable. Phenogrid will be displayed in many pages.
• The following pages will be replaced with overview pages described in R24 Aim 1.1: Enhance user navigation through the Monarch Portal (aka "progressive disclosure") / Disease overview page master plan #240. Work will occur after v1.0 release.
  • [ ] Explore diseases https://monarchinitiative.org/disease
  • [ ] Explore phenotypes https://monarchinitiative.org/phenotype
  • [ ] Explore genes https://monarchinitiative.org/gene
  • [ ] Explore models of disease https://monarchinitiative.org/model
• Data downloads https://archive.monarchinitiative.org/latest/
  • Move?: Yes.
  • Add a ReadMe file to https://archive.monarchinitiative.org/latest/
  • Ticket: Update Downloads page #133
  • New path in monarch-ui: https://archive.monarchinitiative.org/latest/
• Monarch Phenotype Profile Analysis https://monarchinitiative.org/analyze/phenotypes
  • Move?: yes.
  • Tickets: Update documentation for how to use Phenotype Profile Search #181, Phenotype Profile Search - Feedback #258
  • New path in monarch-ui: (same) monarchinitiative.org/analyze/phenotypes

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