diff --git a/src/pheval/cli.py b/src/pheval/cli.py index 3bf4e235a..c9d3654f1 100644 --- a/src/pheval/cli.py +++ b/src/pheval/cli.py @@ -6,8 +6,8 @@ from .cli_pheval import run from .cli_pheval_utils import ( - benchmark, create_spiked_vcfs_command, + generate_benchmark_stats, generate_stats_plot, prepare_corpus_command, scramble_phenopackets_command, @@ -56,8 +56,7 @@ def pheval_utils(): pheval_utils.add_command(scramble_phenopackets_command) pheval_utils.add_command(update_phenopackets_command) pheval_utils.add_command(create_spiked_vcfs_command) -pheval_utils.add_command(benchmark) -pheval_utils.add_command(benchmark) +pheval_utils.add_command(generate_benchmark_stats) pheval_utils.add_command(semsim_to_exomiserdb_command) pheval_utils.add_command(generate_stats_plot) pheval_utils.add_command(prepare_corpus_command) diff --git a/src/pheval/cli_pheval_utils.py b/src/pheval/cli_pheval_utils.py index dc56a5264..ab3c4aae9 100644 --- a/src/pheval/cli_pheval_utils.py +++ b/src/pheval/cli_pheval_utils.py @@ -359,7 +359,7 @@ def create_spiked_vcfs_command( help="Score threshold.", type=float, ) -def benchmark( +def generate_benchmark_stats( run_data: Path, score_order: str, threshold: float,