ccpp.yml

name: C++ CI

on: 
    workflow_dispatch:
    push:
    pull_request:
    repository_dispatch:
        types: [linux-compile-test, install-test]
jobs:
  build:

    runs-on: ubuntu-latest
    
    steps:
    - uses: actions/checkout@v3
    - name: prerequisites
      run: |
          sudo apt-get update
          sudo apt-get install -y hmmer ncbi-blast+ git libcurl4-openssl-dev build-essential curl
    - name: submodule checkout
      run: git submodule update --init --recursive
    - name: make
      run: cat version.txt; make
    - name: download db
      run: ./amrfinder -u
    - name: Software and DB version
      run: ./amrfinder --database_version
    - name: make test
      run: make test
    - name: test for no-overwrite database update (PD-3469 / https://github.com/ncbi/amr/issues/16)
      run: ./amrfinder -u 2>&1 | fgrep 'Skipping update'
    - name: make github_binaries
      run: make github_binaries
    - uses: actions/upload-artifact@v3
      with:
          name: release-binary
          path: amrfinder_binaries_v*.tar.gz