diff --git a/.github/workflows/binary.yml b/.github/workflows/binary.yml index 97d25c7..ce30c63 100644 --- a/.github/workflows/binary.yml +++ b/.github/workflows/binary.yml @@ -23,11 +23,11 @@ jobs: run: ./amrfinder --database_version - name: run tests included with distribution run: | - ./amrfinder --plus -p test_prot.fa -g test_prot.gff -O Escherichia > test_prot.got + ./amrfinder --plus -p test_prot.fa -g test_prot.gff -O Escherichia --hierarchy_node > test_prot.got diff test_prot.expected test_prot.got - ./amrfinder --plus -n test_dna.fa -O Escherichia --mutation_all test_dna_mut_all.got > test_dna.got + ./amrfinder --plus -n test_dna.fa -O Escherichia --mutation_all test_dna_mut_all.got --hierarchy_node > test_dna.got diff test_dna.expected test_dna.got - ./amrfinder --plus -n test_dna.fa -p test_prot.fa -g test_prot.gff -O Escherichia > test_both.got + ./amrfinder --plus -n test_dna.fa -p test_prot.fa -g test_prot.gff -O Escherichia --hierarchy_node > test_both.got diff test_both.expected test_both.got - name: Run tests run: |