From 803e88eff93bbc4aab81a947d8e583b3e778ba55 Mon Sep 17 00:00:00 2001
From: Vyacheslav Brover <vyacheslav.brover@nih.gov>
Date: Mon, 23 Dec 2024 10:41:58 -0500
Subject: [PATCH] PD-5205 Replace ", " by "," in the AMRFinderPlus column
 "closest reference accession"

---
 stxtyper.cpp | 3 ++-
 version.txt  | 2 +-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/stxtyper.cpp b/stxtyper.cpp
index 1b6f5fd..4f1c6e0 100644
--- a/stxtyper.cpp
+++ b/stxtyper.cpp
@@ -32,6 +32,7 @@
 * Dependencies: NCBI BLAST, gunzip (optional)
 *
 * Release changes:
+*  1.0.33 12/23/2024 PD-5205  Replace ", " by "," in the AMRFinderPlus column "Closest reference accession"
 *  1.0.32 12/20/2024 PD-5201  Change empty fields to NA
 *  1.0.31 12/17/2024 PD-5181  COMPLETE and COMPLETE_NOVEL is preferred over the other operon types
 *                             operons with higher identity and higher coverage are preferred
@@ -642,7 +643,7 @@ struct Operon
         //const size_t refLen = al1->refLen + al2->refLen;
         //const double refCoverage = double (al1->getAbsCoverage () + al2->getAbsCoverage ()) / double (refLen) * 100.0;
           const size_t alignmentLen = al1->length + al2->length;
-          const string refAccessions (al1->refAccession + ", " + al2->refAccession);
+          const string refAccessions (al1->refAccession + "," + al2->refAccession);  // No space: PD-5205
           const string fam (al1->getGenesymbol () + fusion_infix + al2->getGenesymbol ());
           td << na                // 1 "Protein identifier"  
              << targetName        // 2 "Contig id"
diff --git a/version.txt b/version.txt
index 15245f3..e8eb7f1 100644
--- a/version.txt
+++ b/version.txt
@@ -1 +1 @@
-1.0.32
+1.0.33