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Fix CI

Fix CI #357

Triggered via pull request January 30, 2024 20:20
@tsibleytsibley
opened #72
fix-ci
Status Failure
Total duration 3m 57s
Artifacts 4

ci.yaml

on: pull_request
test-pathogen-repo-ci-failure  /  configuration
0s
test-pathogen-repo-ci-failure / configuration
test-pathogen-repo-ci-no-example-data  /  configuration
3s
test-pathogen-repo-ci-no-example-data / configuration
test-pathogen-repo-ci  /  configuration
1s
test-pathogen-repo-ci / configuration
test-setup-nextstrain-cli
52s
test-setup-nextstrain-cli
test-docs-ci-conda  /  build-conda
4s
test-docs-ci-conda / build-conda
test-docs-ci-conda  /  build-pip
0s
test-docs-ci-conda / build-pip
test-docs-ci-pip  /  build-conda
0s
test-docs-ci-pip / build-conda
test-docs-ci-pip  /  build-pip
56s
test-docs-ci-pip / build-pip
lint
9s
lint
Matrix: test-pathogen-repo-build
Matrix: test-pathogen-repo-ci-failure / build
Matrix: test-pathogen-repo-ci-no-example-data / build
Matrix: test-pathogen-repo-ci / build
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Annotations

5 errors and 16 warnings
test-docs-ci-conda / build-conda
ENOENT: no such file or directory, open '/home/runner/work/.github/.github/environment.yml'
test-pathogen-repo-ci-failure / build (docker)
Process completed with exit code 1.
test-pathogen-repo-ci-failure / build (conda)
Process completed with exit code 1.
test-pathogen-repo-ci / build (docker)
Process completed with exit code 1.
test-pathogen-repo-ci / build (conda)
Process completed with exit code 1.
lint
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-docs-ci-conda / build-conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-setup-nextstrain-cli
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-build (conda) / workflow-context
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/github-script@v6. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-build (docker) / workflow-context
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/github-script@v6. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-docs-ci-pip / build-pip
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci-failure / build (docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/checkout@v3, actions/setup-python@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci-failure / build (conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/checkout@v3, actions/setup-python@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci / build (docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/checkout@v3, actions/setup-python@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci / build (docker)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci / build (conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/checkout@v3, actions/setup-python@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci / build (conda)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-build (docker) / run-build
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-python@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci-no-example-data / build (docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/checkout@v3, actions/setup-python@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci-no-example-data / build (conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/checkout@v3, actions/setup-python@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-build (conda) / run-build
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-python@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
build-output-conda Expired
1.61 MB
build-output-docker Expired
1.6 MB
outputs-conda Expired
1.6 MB
outputs-docker Expired
1.57 MB