diff --git a/nextclade_dataset/pathogen.json b/nextclade_dataset/pathogen.json index 2315ebf..b52ddcf 100644 --- a/nextclade_dataset/pathogen.json +++ b/nextclade_dataset/pathogen.json @@ -8,8 +8,26 @@ "attributes": { "name": "Measles" }, - "schemaVersion": "3.0.0", - "version": { - "tag": "unreleased" - } + "schemaVersion": "1.0.0", + "alignmentParams": { + "minSeedCover": 0.01, + "minLength": 400 + }, + "qc": { + "missingData": { + "enabled": true, + "missingDataThreshold": 20, + "scoreBias": 4 + }, + "mixedSites": { + "enabled": true, + "mixedSitesThreshold": 4 + }, + "frameShifts": { + "enabled": true + }, + "stopCodons": { + "enabled": true + } + } }