diff --git a/ingest/workflow/snakemake_rules/sort.smk b/ingest/workflow/snakemake_rules/sort.smk index ea8e79c..fda5046 100644 --- a/ingest/workflow/snakemake_rules/sort.smk +++ b/ingest/workflow/snakemake_rules/sort.smk @@ -60,7 +60,7 @@ rule nextclade: nextclade = "data/{type}/nextclade.tsv" params: dataset = "rsv-{type}_nextclade", - output_columns = "clade qc.overallScore qc.overallStatus alignmentScore alignmentStart alignmentEnd coverage dynamic" + output_columns = "seqName clade qc.overallScore qc.overallStatus alignmentScore alignmentStart alignmentEnd coverage dynamic" threads: 8 shell: """ @@ -84,4 +84,3 @@ rule extend_metadata: --nextclade {input.nextclade} \ --output {output.metadata} """ -