examples/models/r_mnist/r_mnist.ipynb

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   "metadata": {},
   "source": [
    "# R MNIST Model\n",
    "\n",
    " * Wrap a scikit-learn python model for use as a prediction microservice in seldon-core\n",
    "   * Run locally on Docker to test\n",
    "   * Deploy on seldon-core running on minikube\n",
    " \n",
    "## Depenencies\n",
    "\n",
    " * [Helm](https://github.com/kubernetes/helm)\n",
    " * [Minikube](https://github.com/kubernetes/minikube)\n",
    " * [S2I](https://github.com/openshift/source-to-image)\n",
    " * R\n",
    "\n",
    "```bash\n",
    "pip install sklearn\n",
    "pip install grpcio-tools\n",
    "```\n",
    "\n",
    "## Train locally\n",
    " "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!rm -f *ubyte && ./get_data.sh && Rscript train.R"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Wrap model using s2i"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!s2i build . seldonio/seldon-core-s2i-r:0.1 r-mnist:0.1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!docker run --name \"mnist_predictor\" -d --rm -p 5000:5000 r-mnist:0.1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!cd ../../../wrappers/testing && make build_protos"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Send some random features that conform to the contract"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!python ../../../wrappers/testing/tester.py contract.json 0.0.0.0 5000 -p"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!docker rm mnist_predictor --force"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!minikube start --memory 4096 --feature-gates=CustomResourceValidation=true --extra-config=apiserver.Authorization.Mode=RBAC"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!kubectl create clusterrolebinding kube-system-cluster-admin --clusterrole=cluster-admin --serviceaccount=kube-system:default"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!helm init"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!helm install ../../../helm-charts/seldon-core-crd --name seldon-core-crd  --set usage_metrics.enabled=true\n",
    "!helm install ../../../helm-charts/seldon-core --name seldon-core "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!eval $(minikube docker-env) && s2i build . seldonio/seldon-core-s2i-r:0.1 r-mnist:0.1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!kubectl create -f r_mnist_deployment.json"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Wait until ready (replicas == replicasAvailable)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!kubectl get seldondeployments seldon-deployment-example -o jsonpath='{.status}' "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!cd ../../../util/api_tester && make build_protos "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!python ../../../util/api_tester/api-tester.py contract.json \\\n",
    "    `minikube ip` `kubectl get svc -l app=seldon-apiserver-container-app -o jsonpath='{.items[0].spec.ports[0].nodePort}'` \\\n",
    "    --oauth-key oauth-key --oauth-secret oauth-secret -p"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!minikube delete"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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