plotpup.py TypeError: __init__() got an unexpected keyword argument 'add_all'

[odovgusha]

Hi, thank you for helping with previous issue.

after running the coolpup
coolpup.py $FOLDER/file.cool --outname $FOLDER/file.cool_out $FOLDER/encode_chipseq.bed
I ve get a cool_out file which is quite small in size (attached in zip)

and after running the plotpup.py
plotpup.py $FOLDER/file.cool_out --output $FOLDER/test.png

I get
Traceback (most recent call last):
File "/usr/users/odovgus1/miniconda3/bin/plotpup.py", line 8, in
sys.exit(main())
File "/usr/users/odovgus1/miniconda3/lib/python3.7/site-packages/coolpuppy/plotpuppy_main.py", line 202, in main
cbar_pad="3%",
TypeError: init() got an unexpected keyword argument 'add_all'

Do you have any suggestions? I have the log file and the cool_out file in zip attached. Thanks!
files.zip

[efriman]

Hi,
You are using an old version of the software so it's hard to troubleshoot. Please do a clean install with the latest release and hopefully that will solve it!

[JosephAguilera]

Hi, thank you for helping with previous issue.

after running the coolpup coolpup.py $FOLDER/file.cool --outname $FOLDER/file.cool_out $FOLDER/encode_chipseq.bed I ve get a cool_out file which is quite small in size (attached in zip)

and after running the plotpup.py plotpup.py $FOLDER/file.cool_out --output $FOLDER/test.png

I get Traceback (most recent call last): File "/usr/users/odovgus1/miniconda3/bin/plotpup.py", line 8, in sys.exit(main()) File "/usr/users/odovgus1/miniconda3/lib/python3.7/site-packages/coolpuppy/plotpuppy_main.py", line 202, in main cbar_pad="3%", TypeError: init() got an unexpected keyword argument 'add_all'

Do you have any suggestions? I have the log file and the cool_out file in zip attached. Thanks! files.zip

Hello odovgusha,

I am not too sure if you have solved this issue, but I received the exact same error, and what solved it for me was downgrading matplotlib to 3.3.4. Hope this helps!

Best,
Joseph