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    34 repositories

    • HTAPP-Pipelines

      Public
      A record of the analysis pipelines used to create the HTAPP data
      Jupyter Notebook
      •11•29•1•0•Updated Dec 16, 2024Dec 16, 2024

    • PowerAnalysisForSpatialOmics

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •5•23•3•0•Updated Oct 4, 2024Oct 4, 2024

    • scbtf_experiments

      Public
      Experiments ran with scbtf
      Jupyter Notebook
      •0•2•0•0•Updated Aug 6, 2024Aug 6, 2024

    • scBTF

      Public
      Single Cell Bayesian Tensor Factorization
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Aug 6, 2024Aug 6, 2024

    • scrnaseq_pipeline

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 6, 2024Jun 6, 2024

    • perturbseq

      Public
      Perturb-seq analysis package
      Python
      •
      MIT License
      •3•14•2•0•Updated May 2, 2024May 2, 2024

    • sc_eVIP

      Public
      Variant impact phenotyping using Perturb-seq
      Jupyter Notebook
      •
      MIT License
      •2•9•1•1•Updated Apr 22, 2024Apr 22, 2024

    • scPhere

      Public
      Python
      •
      Other
      •14•98•9•1•Updated Mar 24, 2023Mar 24, 2023

    • snFFPE-Seq

      Public
      analysis for single nucleus FFPE-Sequencing
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Sep 18, 2022Sep 18, 2022

    • Perturb-CITE-seq

      Public
      Python
      •2•15•0•0•Updated Jun 2, 2022Jun 2, 2022

    • sm-omics

      Public
      Jupyter Notebook
      •
      Other
      •2•5•0•0•Updated Feb 1, 2022Feb 1, 2022

    • SpoTteR

      Public
      HTML
      •
      Other
      •2•1•0•0•Updated Dec 21, 2021Dec 21, 2021

    • human_skin_inflammation

      Public
      Jupyter Notebook
      •0•3•0•0•Updated Aug 20, 2021Aug 20, 2021

    • inCITE-seq

      Public
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Jun 1, 2021Jun 1, 2021

    • covid19-autopsy

      Public
      Jupyter Notebook
      •3•11•1•0•Updated May 6, 2021May 6, 2021

    • forceatlas2-python

      Public
      Pip installable forceatlas2
      Python
      •
      GNU General Public License v3.0
      •2•4•0•1•Updated Feb 7, 2021Feb 7, 2021

    • RetinalGanglionCell-ONC

      Public
      R
      •2•4•0•0•Updated Jan 8, 2021Jan 8, 2021

    • ens_atlas

      Public
      R
      •0•2•1•0•Updated Sep 20, 2020Sep 20, 2020

    • ivPerturbSeq

      Public
      R
      •4•12•2•0•Updated Sep 8, 2020Sep 8, 2020

    • DIALOGUE

      Public
      0•1•0•0•Updated Aug 10, 2020Aug 10, 2020

    • scPlot

      Public
      Single cell interactive plotting tools
      visualizationplotscrna-seqtranscriptomicsvisualize-datascrna
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •8•23•2•1•Updated Jun 12, 2020Jun 12, 2020

    • forceatlas2

      Public
      Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d
      graphforce-layoutgraph-layoutforce-directed-graphsgephibarnes-hut-tree
      Java
      •
      GNU General Public License v3.0
      •4•22•2•1•Updated May 8, 2020May 8, 2020

    • skin-ILCs

      Public
      Jupyter Notebook
      •3•1•1•0•Updated Apr 28, 2020Apr 28, 2020

    • Riboseq-nuORFs

      Public
      Jupyter Notebook
      •1•10•0•0•Updated Jan 15, 2020Jan 15, 2020

    • MAUDE

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 21, 2019Oct 21, 2019

    • scCloud

      Public archive
      scCloud workflows
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•1•1•Updated Oct 5, 2019Oct 5, 2019

    • scCloudPy

      Public archive
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•1•0•Updated Oct 3, 2019Oct 3, 2019

    • CisRegModels

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • cumulus-obsolete

      Public
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • hdst

      Public
      Jupyter Notebook
      •3•19•4•0•Updated Sep 18, 2019Sep 18, 2019