Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add Configuration for Handling Multiple File or Data Types #51

Open
5 tasks
b-f-chan opened this issue Aug 29, 2024 · 0 comments
Open
5 tasks

Add Configuration for Handling Multiple File or Data Types #51

b-f-chan opened this issue Aug 29, 2024 · 0 comments
Assignees
@demariadaniel
Labels
ITCR-IOBIO

Comments

@b-f-chan
Copy link

Add configuration to the CLI tool to handle multiple file or data types, as follows:

  • Varying File Sizes (small / med / large)
  • Data Types: DNA, RNA, WGBS (Whole Genome Bisulifte) and Chipseq (Chromatin Immunoprecipicated Sequencing)
  • File Type: BAM vs CRAM

This may be subject to change later, @demariadaniel to add details

Dependencies:

  • Need extra sample files of all file types from @edsu7
  • Need to collaborate with IOBIO team on several open questions (@demariadaniel to fill in these sub-tasks after discussion with IOBIO)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@demariadaniel demariadaniel

Labels
ITCR-IOBIO
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@demariadaniel @b-f-chan