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Add Support for Gencode Coverage Mapping #52

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b-f-chan opened this issue Aug 29, 2024 · 0 comments
Open
3 tasks

Add Support for Gencode Coverage Mapping #52

b-f-chan opened this issue Aug 29, 2024 · 0 comments
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@b-f-chan
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Need to add support for gencode coverage mapping --> This involves several sub-tasks which may become separate tickets later. @demariadaniel and @edsu7 to decide details later.

High-Level Sub-Tasks:

  • Add functionality to map gencode names and regions (coordinates) to read coverage values in the BAM file
  • Determine and add list of priority genes to use in the mapping (we are NOT going to use all 63K+ of genes possible)
  • Add functionality to translate the mapping into an Analysis Object in SONG (this likely needs to be its own ticket later) (basically logic to submit into SONG)
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