Mocha tests for julia v0.5 #213
Comments
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I have found that some of my own code that uses Mocha will not run with julia 0.5. To try to figure out what's going on, I tried the tests. Some tests fail, too. I'm appending the results I get. I'm happy to help out in any way I can. |
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I fixed some compatibility issue in the master. Could you guys see if it fixed your issue? |
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After checking out from master, the tests still have problems, the result I obtain is below. This is the same as before, I believe. |
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What version of Julia and what OS are you using? I tested on Ubuntu and Julia v0.5 release, everything works fine for me. |
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It's julia Version 0.5.1-pre+2 (2016-09-20 03:34 UTC) on Debian testing. If the tests run fine on Ubuntu, then I'll have to check my julia installation. I just did a git checkout and built from source, the way I have always done with older versions. |
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I get the same error as reported above using the generic 64 bit binaries from http://julialang.org/downloads/ |
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@mcreel Can you test a stable release (I'm using v0.5.0) instead of testing version like 0.5.1-pre+2? |
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The binaries from julialang.org are the 0.5.0 release. Here's the complete version information: julia> The steps I do, starting from a system without Mocha, are Pkg.clone("Mocha") which gives the same error as reported above when 0.5.1-pre+2 is used. |
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Please find below my test result. I used the Generic Linux binaries at http://julialang.org/downloads/ phuoc@i7 multi-ae % uname -a
Linux i7 4.7.4-1-ARCH #1 SMP PREEMPT Thu Sep 15 15:24:29 CEST 2016 x86_64 GNU/Linux
julia [83/83]
phuoc@i7 multi-ae % julia
cd("/linux/share/ml/multi-ae")
_
_ _ _(_)_ | A fresh approach to technical computing
(_) | (_) (_) | Documentation: http://docs.julialang.org
_ _ _| |_ __ _ | Type "?help" for help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 0.5.0 (2016-09-19 18:14 UTC)
_/ |\__'_|_|_|\__'_| | Official http://julialang.org/ release
|__/ | x86_64-pc-linux-gnu
_
_ _ _(_)_ | By greedy hackers for greedy hackers.
(_) | (_) (_) | Documentation: http://docs.julialang.org
_ _ _| |_ __ _ | Type "?help" for help.
| | | | | | |/ _' | |
| | |_| | | | (_| | | Version 0.5.0 (2016-09-19 18:14 UTC)
_/ |\__'_|_|_|\__'_| | Official http://julialang.org/ release
|__/ | x86_64-pc-linux-gnu
> cd("/linux/share/ml/multi-ae")
> Pkg.clone("https://github.com/pluskid/Mocha.jl.git")
INFO: Cloning Mocha from https://github.com/pluskid/Mocha.jl.git
INFO: Computing changes...
INFO: Installing JLD v0.6.3
INFO: Installing LegacyStrings v0.1.1
INFO: Building Blosc
INFO: Building HDF5
INFO: Package database updated
> Pkg.test("Mocha")
INFO: Testing Mocha
WARNING: Method definition info(Any...) in module Base at util.jl:320 overwritten in module Logging at /home/phuoc/.julia/v0.5/Logging/src/Logging.jl:61.
WARNING: Method definition warn(Any...) in module Base at util.jl:350 overwritten in module Logging at /home/phuoc/.julia/v0.5/Logging/src/Logging.jl:61.
Configuring Mocha...
* CUDA disabled by default
* Native Ext disabled by default
Mocha configured, continue loading module...
WARNING: could not import Base.lastidx into LegacyStrings
DefaultBackend = Mocha.CPUBackend
WARNING: using Mocha.setup in module Main conflicts with an existing identifier.
-- Testing simple Adam solver call
04-Oct 20:48:30:INFO:root:Constructing net TEST on Mocha.CPUBackend...
04-Oct 20:48:30:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:30:INFO:root:Setup layers...
04-Oct 20:48:30:INFO:root:Network constructed!
04-Oct 20:48:30:DEBUG:root:#DEBUG Checking network topology for back-propagation
04-Oct 20:48:31:DEBUG:root:Init network TEST
04-Oct 20:48:31:DEBUG:root:Init parameter weight for layer ip1
04-Oct 20:48:31:DEBUG:root:Init parameter bias for layer ip1
04-Oct 20:48:31:DEBUG:root:Init parameter weight for layer ip2
04-Oct 20:48:31:DEBUG:root:Init parameter bias for layer ip2
04-Oct 20:48:31:DEBUG:root:#DEBUG Initializing coffee breaks
04-Oct 20:48:31:DEBUG:root:#DEBUG Entering solver loop
04-Oct 20:48:32:DEBUG:root:Destroying network TEST
-- Testing simple SGD solver call
04-Oct 20:48:32:INFO:root:Constructing net TEST on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:32:INFO:root:Setup layers...
04-Oct 20:48:32:INFO:root:Network constructed!
04-Oct 20:48:32:DEBUG:root:#DEBUG Checking network topology for back-propagation
04-Oct 20:48:32:DEBUG:root:Init network TEST
04-Oct 20:48:32:DEBUG:root:Init parameter weight for layer ip1
04-Oct 20:48:32:DEBUG:root:Init parameter bias for layer ip1
04-Oct 20:48:32:DEBUG:root:Init parameter weight for layer ip2
04-Oct 20:48:32:DEBUG:root:Init parameter bias for layer ip2
04-Oct 20:48:32:DEBUG:root:#DEBUG Initializing coffee breaks
04-Oct 20:48:32:DEBUG:root:#DEBUG Entering solver loop
04-Oct 20:48:32:DEBUG:root:Destroying network TEST
-- Testing network topology with duplicated blobs
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 1 layers...
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 2 layers...
-- Testing network topology with missing blobs
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 1 layers...
-- Testing network topology with circular dependency
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 2 layers...
-- Testing network topology with multiple back-propagate path
> Good blob sharing
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 5 layers...
04-Oct 20:48:32:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
> Bad blob sharing
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 6 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
-- Testing network topology with dangling blob
> Good case
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
> Bad case
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
> Good case 2
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 5 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
> Bad case 2
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 6 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
-- Testing gradients on simple network (example for gradient checking code)
04-Oct 20:48:33:INFO:root:Constructing net TEST on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
-- Testing simple reference counting...
-- Testing glob Utilities
ERROR: LoadError: LoadError: SystemError: unable to read directory layers: No such file or directory
in readdir(::String) at ./file.jl:303
in #glob#9(::Symbol, ::Function, ::String, ::Regex) at /home/phuoc/.julia/v0.5/Mocha/src/utils/io.jl:26
in test_glob() at /home/phuoc/.julia/v0.5/Mocha/test/utils/glob.jl:4
in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
in process_options(::Base.JLOptions) at ./client.jl:262
in _start() at ./client.jl:318
while loading /home/phuoc/.julia/v0.5/Mocha/test/utils/glob.jl, in expression starting on line 22
while loading /home/phuoc/.julia/v0.5/Mocha/test/runtests.jl, in expression starting on line 46
==================================[ ERROR: Mocha ]==================================
failed process: Process(`/home/phuoc/packages/julia/bin/julia -Cx86-64 -J/home/phuoc/packages/julia/lib/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes /home/phuoc/.julia/v0.5/Mocha/test/runtests.jl`, ProcessExited(1)) [1]
====================================================================================
ERROR: Mocha had test errors
in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at ./pkg/entry.jl:740
in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at ./<missing>:0
in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at ./pkg/dir.jl:31
in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at ./file.jl:59
in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./pkg/dir.jl:31
in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./<missing>:0
in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258
in test(::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258 |
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Julia v0.5 was release 2 days ago. Could you please run tests for this version.
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