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$ "/Users/karel/github/my/prophex/prophex" bwt2fa index.fa index.fa [prophex:bwt2fa] Loaded bwa index from index.fa Segmentation fault: 11
$ lldb -- "/Users/karel/github/my/prophex/prophex" bwt2fa index.fa index.fa (lldb) target create "/Users/karel/github/my/prophex/prophex" Current executable set to '/Users/karel/github/my/prophex/prophex' (x86_64). (lldb) settings set -- target.run-args "bwt2fa" "index.fa" "index.fa" (lldb) run Process 40906 launched: '/Users/karel/github/my/prophex/prophex' (x86_64) [prophex:bwt2fa] Loaded bwa index from index.fa prophex was compiled with optimization - stepping may behave oddly; variables may not be available. Process 40906 stopped * thread #1, queue = 'com.apple.main-thread', stop reason = EXC_BAD_ACCESS (code=EXC_I386_GPFLT) frame #0: 0x0000000100024b6d prophex`bwt2fa(prefix=<unavailable>, output_filename="index.fa") at prophex_build.c:130 [opt] 127 bwtint_t progress_output_step = (bwt->seq_len + 9) / 10; 128 while (i < bwt->seq_len) { 129 bwtint_t new_pos = bwt_pos - (bwt_pos > bwt->primary); -> 130 new_pos = bwt_B0(bwt, new_pos); 131 seq[bwt->seq_len - i - 1] = "ACGT"[new_pos]; 132 new_pos = bwt->L2[new_pos] + bwt_occ(bwt, bwt_pos, new_pos); 133 bwt_pos = bwt_pos == bwt->primary ? 0 : new_pos; Target 0: (prophex) stopped. (lldb)
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