bibliografia.bib

@article{dickson_circuit-theory_2019,
	title = {Circuit-theory applications to connectivity science and conservation},
	volume = {33},
	issn = {1523-1739},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/cobi.13230},
	doi = {10.1111/cobi.13230},
	abstract = {Conservation practitioners have long recognized ecological connectivity as a global priority for preserving biodiversity and ecosystem function. In the early years of conservation science, ecologists extended principles of island biogeography to assess connectivity based on source patch proximity and other metrics derived from binary maps of habitat. From 2006 to 2008, the late Brad McRae introduced circuit theory as an alternative approach to model gene flow and the dispersal or movement routes of organisms. He posited concepts and metrics from electrical circuit theory as a robust way to quantify movement across multiple possible paths in a landscape, not just a single least-cost path or corridor. Circuit theory offers many theoretical, conceptual, and practical linkages to conservation science. We reviewed 459 recent studies citing circuit theory or the open-source software Circuitscape. We focused on applications of circuit theory to the science and practice of connectivity conservation, including topics in landscape and population genetics, movement and dispersal paths of organisms, anthropogenic barriers to connectivity, fire behavior, water flow, and ecosystem services. Circuit theory is likely to have an effect on conservation science and practitioners through improved insights into landscape dynamics, animal movement, and habitat-use studies and through the development of new software tools for data analysis and visualization. The influence of circuit theory on conservation comes from the theoretical basis and elegance of the approach and the powerful collaborations and active user community that have emerged. Circuit theory provides a springboard for ecological understanding and will remain an important conservation tool for researchers and practitioners around the globe.},
	language = {en},
	number = {2},
	urldate = {2023-03-08},
	journal = {Conservation Biology},
	author = {Dickson, Brett G. and Albano, Christine M. and Anantharaman, Ranjan and Beier, Paul and Fargione, Joe and Graves, Tabitha A. and Gray, Miranda E. and Hall, Kimberly R. and Lawler, Josh J. and Leonard, Paul B. and Littlefield, Caitlin E. and McClure, Meredith L. and Novembre, John and Schloss, Carrie A. and Schumaker, Nathan H. and Shah, Viral B. and Theobald, David M.},
	year = {2019},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/cobi.13230},
	keywords = {ya, corridors, corredores, barreras, barriers, corriente eléctrica, dispersal, dispersión, ecological flow, electrical current, flujo ecológico, genética del paisaje, landscape genetics, 廊道, 扩散, 景观, 生态流, 电路模型, 障碍},
	pages = {239--249},
	file = {Accepted Version:/home/lucasjardim/Zotero/storage/2K34HRK3/Dickson et al. - 2019 - Circuit-theory applications to connectivity scienc.pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/UREKJ47P/cobi.html:text/html},
}

@article{gorelick_google_2017,
	title = {Google {Earth} {Engine}: {Planetary}-scale geospatial analysis for everyone},
	url = {https://doi.org/10.1016/j.rse.2017.06.031},
	doi = {10.1016/j.rse.2017.06.031},
	journal = {Remote Sensing of Environment},
	author = {Gorelick, Noel and Hancher, Matt and Dixon, Mike and Ilyushchenko, Simon and Thau, David and Moore, Rebecca},
	year = {2017},
	note = {Publisher: Elsevier},
}

@article{anderson_resilient_2023,
	title = {A resilient and connected network of sites to sustain biodiversity under a changing climate},
	volume = {120},
	url = {https://www.pnas.org/doi/10.1073/pnas.2204434119},
	doi = {10.1073/pnas.2204434119},
	abstract = {Motivated by declines in biodiversity exacerbated by climate change, we identified a network of conservation sites designed to provide resilient habitat for species, while supporting dynamic shifts in ranges and changes in ecosystem composition. Our 12-y study involved 289 scientists in 14 study regions across the conterminous United States (CONUS), and our intent was to support local-, regional-, and national-scale conservation decisions. To ensure that the network represented all species and ecosystems, we stratified CONUS into 68 ecoregions, and, within each, we comprehensively mapped the geophysical settings associated with current ecosystem and species distributions. To identify sites most resilient to climate change, we identified the portion of each geophysical setting with the most topoclimate variability (high landscape diversity) likely to be accessible to dispersers (high local connectedness). These “resilient sites” were overlaid with conservation priority maps from 104 independent assessments to indicate current value in supporting recognized biodiversity. To identify key connectivity areas for sustaining species movement in response to climate change, we codeveloped a fine-scale representation of human modification and ran a circuit-theory-based analysis that emphasized movement potential along geographic climate gradients. Integrating areas with high values for two or more factors, we identified a representative, resilient, and connected network of biodiverse lands covering 35\% of CONUS. Because the network connects climatic gradients across 250,000 biodiversity elements and multiple resilient examples of all geophysical settings in every ecoregion, it could form the spatial foundation for targeted land protection and other conservation strategies to sustain a diverse, dynamic, and adaptive world.},
	number = {7},
	urldate = {2023-03-01},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Anderson, Mark G. and Clark, Melissa and Olivero, Arlene P. and Barnett, Analie R. and Hall, Kimberly R. and Cornett, Meredith W. and Ahlering, Marissa and Schindel, Michael and Unnasch, Bob and Schloss, Carrie and Cameron, D. Richard},
	month = feb,
	year = {2023},
	note = {Publisher: Proceedings of the National Academy of Sciences},
	keywords = {ya},
	pages = {e2204434119},
	file = {Anderson et al_2023_A resilient and connected network of sites to sustain biodiversity under a.pdf:/home/lucasjardim/Zotero/storage/5BSVEF9F/Anderson et al_2023_A resilient and connected network of sites to sustain biodiversity under a.pdf:application/pdf;Anderson et al. - 2023 - A resilient and connected network of sites to sust.pdf:/home/lucasjardim/Zotero/storage/3S3HJJ2G/Anderson et al. - 2023 - A resilient and connected network of sites to sust.pdf:application/pdf},
}

@techreport{duncanson_effectiveness_2022,
	type = {preprint},
	title = {The {Effectiveness} of {Global} {Protected} {Areas} for {Climate} {Change} {Mitigation}},
	url = {https://www.researchsquare.com/article/rs-2318743/v1},
	abstract = {Abstract
          Forests play a critical role in stabilizing Earth’s climate. Establishing Protected Areas (PAs) represents one approach to forest conservation, but PAs were rarely created to mitigate climate change. The global impact of PAs on the carbon cycle, through avoided emissions and/or enhanced growth, has not previously been quantified due to a lack of accurate global carbon stock maps. Here we used {\textasciitilde}412 million lidar samples from NASA’s GEDI mission to estimate a total of 19.7 +/- 1.8 Gt of additional Aboveground Biomass (AGB) associated with PA status. These higher C stocks are primarily attributed to avoided emissions, and are roughly equivalent to annual global fossil fuel emissions. The total measured PA AGB was 125.3 Gt (+/- 0.63), 26\% of all mapped terrestrial woody AGB. These results underscore the importance of conservation of high integrity1, high biomass forests for avoiding carbon emissions and preserving future sequestration.},
	language = {en},
	urldate = {2022-12-17},
	institution = {In Review},
	author = {Duncanson, Laura and Liang, Mengyu and Leitold, Veronika and Armston, John and Moorthy, Sruthi M. and Dubayah, Ralph and Costedoat, Sebastien and Enquist, Brian and Fatoyinbo, Lola and Goetz, Scott and Gonzalez-Roglich, Mariano and Merow, Cory and Roehrdanz, Patrick and Tabor, Karyn and Zvoleff, Alex},
	month = dec,
	year = {2022},
	doi = {10.21203/rs.3.rs-2318743/v1},
	file = {Duncanson et al. - 2022 - The Effectiveness of Global Protected Areas for Cl.pdf:/home/lucasjardim/Zotero/storage/NTFGGMSK/Duncanson et al. - 2022 - The Effectiveness of Global Protected Areas for Cl.pdf:application/pdf},
}

@misc{noauthor_ergo_nodate,
	title = {{ERGo} {Landforms} - {ScienceBase}-{Catalog}},
	url = {https://www.sciencebase.gov/catalog/item/564b4bb0e4b0ebfbef0d31d2},
	urldate = {2022-12-15},
	file = {ERGo Landforms - ScienceBase-Catalog:/home/lucasjardim/Zotero/storage/MFTHRULK/564b4bb0e4b0ebfbef0d31d2.html:text/html},
}

@article{leonardi_pastclim_2023,
	title = {pastclim 1.2: an {R} package to easily access and use paleoclimatic reconstructions},
	volume = {2023},
	issn = {1600-0587},
	shorttitle = {pastclim 1.2},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/ecog.06481},
	doi = {10.1111/ecog.06481},
	abstract = {The recent development of continuous paleoclimatic reconstructions covering hundreds of thousands of years paved the way for a large number of studies from disciplines ranging from paleoecology to archaeology, conservation to population genetics, macroevolution to anthropology and human evolution to linguistics. Unfortunately, (paleo)climatic data can be challenging to extract and analyze for scholars unfamiliar with such specific file formats. Here we present pastclim, an R package facilitating the access and use of paleoclimatic reconstructions. It currently includes two of such datasets, covering respectively the last 120 000 and 800 000 years, and a vignette provides instructions on how to include additional datasets. The package contains a set of functions to quickly and easily recover the climate for time periods of interest either for the whole world or specific areas, extract data from locations scattered in space and/or time, retrieve time series from individual sites, and manage the ice or land coverage, offering a handy platform to include the climate of the past into existing or new analyses and pipelines.},
	language = {en},
	number = {3},
	urldate = {2023-03-06},
	journal = {Ecography},
	author = {Leonardi, Michela and Hallett, Emily Y. and Beyer, Robert and Krapp, Mario and Manica, Andrea},
	year = {2023},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/ecog.06481},
	keywords = {evolutionary biology, paleoclimate, paleoecology, R package},
	pages = {e06481},
	file = {Leonardi et al_2023_pastclim 1.pdf:/home/lucasjardim/Zotero/storage/3E3IL24P/Leonardi et al_2023_pastclim 1.pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/P5CQ8DSW/ecog.html:text/html},
}

@article{melo_sensitivity_2021,
	title = {Sensitivity and {Performance} {Analyses} of the {Distributed} {Hydrology}–{Soil}–{Vegetation} {Model} {Using} {Geomorphons} for {Landform} {Mapping}},
	volume = {13},
	copyright = {http://creativecommons.org/licenses/by/3.0/},
	issn = {2073-4441},
	url = {https://www.mdpi.com/2073-4441/13/15/2032},
	doi = {10.3390/w13152032},
	abstract = {Landform classification is important for representing soil physical properties varying continuously across the landscape and for understanding many hydrological processes in watersheds. Considering it, this study aims to use a geomorphology map (Geomorphons) as an input to a physically based hydrological model (Distributed Hydrology Soil Vegetation Model (DHSVM)) in a mountainous headwater watershed. A sensitivity analysis of five soil parameters was evaluated for streamflow simulation in each Geomorphons feature. As infiltration and saturation excess overland flow are important mechanisms for streamflow generation in complex terrain watersheds, the model’s input soil parameters were most sensitive in the “slope”, “hollow”, and “valley” features. Thus, the simulated streamflow was compared with observed data for calibration and validation. The model performance was satisfactory and equivalent to previous simulations in the same watershed using pedological survey and moisture zone maps. Therefore, the results from this study indicate that a geomorphologically based map is applicable and representative for spatially distributing hydrological parameters in the DHSVM.},
	language = {en},
	number = {15},
	urldate = {2023-03-07},
	journal = {Water},
	author = {Melo, Pâmela A. and Alvarenga, Lívia A. and Tomasella, Javier and Mello, Carlos R. and Martins, Minella A. and Coelho, Gilberto},
	month = jan,
	year = {2021},
	note = {Number: 15
Publisher: Multidisciplinary Digital Publishing Institute},
	keywords = {complex terrain, DHSVM, fully distributed, landscape patterns},
	pages = {2032},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/LAXJLY9A/Melo et al. - 2021 - Sensitivity and Performance Analyses of the Distri.pdf:application/pdf},
}

@article{raaflaub_effect_2006,
	title = {The effect of error in gridded digital elevation models on the estimation of topographic parameters},
	volume = {21},
	issn = {1364-8152},
	url = {https://www.sciencedirect.com/science/article/pii/S1364815205000526},
	doi = {10.1016/j.envsoft.2005.02.003},
	abstract = {Digital elevation models (DEMs) provide the basic information required to characterise the topographic attributes of terrain. The primary derived topographic parameters associated with DEMs are slope and aspect. Slope and aspect maps are used in a wide variety of applications. Slope and aspect can be used to calculate other significant topographic parameters such as upslope area and topographic index. The topographic index, in turn, can be used by distributed hydrological models to characterise the spatial distribution of terrain moisture. Many algorithms have been developed to calculate slope, aspect and upslope area from DEMs – specifically from gridded DEMs – but little work has gone into determining the uncertainty in these parameters, or the affect of this uncertainty in further applications. The accuracy of these parameters is dependent both on the algorithm and on the errors associated with the DEM itself. Since it is almost impossible to model all the errors associated with a given slope/aspect algorithm and since a DEM is normally only provided with a single rms error, simple error propagation is not adequate to determine the error associated with the derived topographic parameters. A more rigorous method of determining the affect of DEM errors on derived topographic parameters is with statistical analysis using Monte Carlo simulation and error realisations of the DEMs. In this research we demonstrate that the error sensitivity of slope decreases as the number of neighbours used in the algorithm increases, hence steepest neighbour algorithms, which are common in hydrology are more sensitive to DEM error than algorithms that use four or more neighbours. In contrast, the average error sensitivity of aspect to DEM error is not dependent on the algorithm used. However, while the mean variability of this sensitivity was lower for the steepest neighbour algorithms, their errors were spread over a greater variety of slopes while the eight neighbour algorithms had errors confined to flat regions. The error sensitivity of upslope area and topographic index is related to the use of steepest neighbour flow routing algorithm.},
	language = {en},
	number = {5},
	urldate = {2023-03-07},
	journal = {Environmental Modelling \& Software},
	author = {Raaflaub, Lynn D. and Collins, Michael J.},
	month = may,
	year = {2006},
	keywords = {Digital elevation model, Error analysis, Topography},
	pages = {710--732},
	file = {ScienceDirect Snapshot:/home/lucasjardim/Zotero/storage/JVDQYXBA/S1364815205000526.html:text/html},
}

@article{schmidt_fuzzy_2004,
	title = {Fuzzy land element classification from {DTMs} based on geometry and terrain position},
	volume = {121},
	issn = {0016-7061},
	url = {https://www.sciencedirect.com/science/article/pii/S0016706103003720},
	doi = {10.1016/j.geoderma.2003.10.008},
	abstract = {Land elements have been used as basic landform descriptors in many science disciplines, including soil mapping, vegetation mapping, and landscape ecology. We describe an approach in terrain classification, with the objective of deriving a method for classifying land elements from DTMs based on their fundamental characteristics. The methodology for modelling land elements is implemented as a two-step process: first, form elements are classified based on local geometry, and second, land elements are derived by evaluating the form elements in their landscape context. Form elements are derived by fuzzy classification of slope and curvature at a specified global scale (window size). The form elements are reclassified according to their geomorphometric context using a higher scale terrain position index. The resulting land elements are evaluated with respect to their predictive value for modelling soil properties. It is shown that scaling geomorphometric properties is important for applying them to predict soil properties and to model landform units. The presented model, based on scaled geomorphometric properties and geomorphometric context, using a limited number of model parameters, is capable of modelling fundamental land elements that can be utilized in soil–landscape modelling and in other applications in land resource management.},
	language = {en},
	number = {3},
	urldate = {2023-03-07},
	journal = {Geoderma},
	author = {Schmidt, Jochen and Hewitt, Allan},
	month = aug,
	year = {2004},
	keywords = {Digital elevation models, Fuzzy sets, GIS, Land elements, Soil–landscape modelling, Terrain classification},
	pages = {243--256},
}

@book{grillo_ecosystems_2011,
	title = {Ecosystems {Biodiversity}},
	isbn = {978-953-307-417-7},
	abstract = {Ecosystems can be considered as dynamic and interactive clusters made up of plants, animals and micro-organism communities. Inevitably, mankind is an integral part of each ecosystem and as such enjoys all its provided benefits. Driven by the increasing necessity to preserve the ecosystem productivity, several ecological studies have been conducted in the last few years, highlighting the current state in which our planet is, and focusing on future perspectives. This book contains comprehensive overviews and original studies focused on hazard analysis and evaluation of ecological variables affecting species diversity, richness and distribution, in order to identify the best management strategies to face and solve the conservation problems.},
	language = {en},
	publisher = {BoD – Books on Demand},
	author = {Grillo, Oscar and Venora, Gianfranco},
	month = dec,
	year = {2011},
	keywords = {Science / General, Science / Life Sciences / Ecology},
}

@misc{noauthor_user_nodate,
	title = {User {Guide} ·},
	url = {https://docs.circuitscape.org/Omniscape.jl/dev/usage/},
	urldate = {2023-03-08},
}

@article{peterman_comparison_2019,
	title = {A comparison of popular approaches to optimize landscape resistance surfaces},
	volume = {34},
	issn = {1572-9761},
	url = {https://doi.org/10.1007/s10980-019-00870-3},
	doi = {10.1007/s10980-019-00870-3},
	abstract = {Landscape resistance surfaces are often used to address questions related to movement, dispersal, or population connectivity. However, modeling landscape resistance is complicated by the selection of the most appropriate analytical approach and the assignment of resistance values to landscape features.},
	language = {en},
	number = {9},
	urldate = {2023-03-15},
	journal = {Landscape Ecology},
	author = {Peterman, William E. and Winiarski, Kristopher J. and Moore, Chloe E. and Carvalho, Carolina da Silva and Gilbert, Anthony L. and Spear, Stephen F.},
	month = sep,
	year = {2019},
	keywords = {Gene flow, Genetic differentiation, Landscape genetics, Landscape resistance, Resistance optimization, ResistanceGA},
	pages = {2197--2208},
}

@article{mcrae_isolation_2006,
	title = {Isolation by resistance},
	volume = {60},
	abstract = {Despite growing interest in the effects of landscape heterogeneity on genetic structuring, few tools are available to incorporate data on landscape composition into population genetic studies. Analyses of isolation by distance have typically either assumed spatial homogeneity for convenience or applied theoretically unjustified distance metrics to compensate for heterogeneity. Here I propose the isolation-by-resistance (IBR) model as an alternative for predicting equilibrium genetic structuring in complex landscapes. The model predicts a positive relationship between genetic differentiation and the resistance distance, a distance metric that exploits precise relationships between random walk times and effective resistances in electronic networks. As a predictor of genetic differentiation, the resistance distance is both more theoretically justified and more robust to spatial heterogeneity than Euclidean or least cost path-based distance measures. Moreover, the metric can be applied with a wide range of data inputs, including coarse-scale range maps, simple maps of habitat and nonhabitat within a species’ range, or complex spatial datasets with habitats and barriers of differing qualities. The IBR model thus provides a flexible and efficient tool to account for habitat heterogeneity in studies of isolation by distance, improve understanding of how landscape characteristics affect genetic structuring, and predict genetic and evolutionary consequences of landscape change.},
	language = {en},
	number = {8},
	journal = {Evolution},
	author = {McRae, Brad H},
	year = {2006},
	keywords = {ya},
	pages = {1551--1561},
	file = {McRae - 2006 - Isolation by resistance.pdf:/home/lucasjardim/Zotero/storage/CJMAHL79/McRae - 2006 - Isolation by resistance.pdf:application/pdf},
}

@article{tadono_t_precise_2014,
	title = {Precise {Global} {DEM} {Generation} by {ALOS} {PRISM}. {Precise} {Global} {DEM} {Generation} by {ALOS} {PRISM}},
	volume = {II},
	doi = {https://doi.org/10.5194/isprsannals-ii-4-71-2014},
	number = {4},
	journal = {ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences},
	author = {Tadono, T. and Ishida, H. and Oda, F. and Naito, S. and Minakawa, K. and Iwamoto, H.},
	year = {2014},
	note = {291 citations (Crossref) [2023-11-30]},
	pages = {71--76},
}

@article{abreu-jardim_tatianne_pf_predicting_2021,
	title = {Predicting impacts of global climatic change on genetic and phylogeographical diversity of a {Neotropical} treefrog},
	volume = {27},
	doi = {10.1111/ddi.13299},
	number = {8},
	journal = {Divcersity and Distribution},
	author = {Abreu-Jardim, Tatianne P.F. and Jardim, Lucas and Ballesteros-Mejia, Liliana and Maciel, Natan M. and Collevatti, Rosane G.},
	year = {2021},
	note = {9 citations (Crossref) [2023-10-27]},
	pages = {1519--1535},
}

@article{lemes_priscila_climate_2014,
	title = {Climate change threatens protected areas of the {Atlantic} {Forest}},
	volume = {23},
	doi = {10.1007/s10531-013-0605-2},
	number = {2},
	journal = {Biodiversity and Conservation},
	author = {Lemes, Priscila and Melo, Adriano Sanches and Loyola, Rafael Dias},
	year = {2014},
	note = {81 citations (Crossref) [2023-10-27]},
	pages = {357--368},
}

@book{ipcc_climate_2022,
	address = {Cambridge, UK and New York, NY, USA},
	title = {Climate {Change} 2022: {Impacts}, {Adaptation} and {Vulnerability}. {Contribution} of {Working} {Group} {II} to the {Sixth} {Assessment} {Report} of the {Intergovernmental} {Panel} on {Climate} {Change} [{H}.-{O}. {Pörtner}, {D}.{C}. {Roberts}, {M}. {Tignor}, {E}.{S}. {Poloczanska}, {K}. {Mintenbeck}, {A}. {Alegría}, {M}. {Craig}, {S}. {Langsdorf}, {S}. {Löschke}, {V}. {Möller}, {A}. {Okem}, {B}. {Rama} (eds.)]},
	url = {10.1017/9781009325844},
	publisher = {Cambridge University Press},
	author = {IPCC},
	year = {2022},
}

@article{lawler_joshua_j_theory_2015,
	title = {The theory behind, and the challenges of, conserving nature’s stage in a time of rapid change},
	volume = {29},
	doi = {10.1111/cobi.12505},
	number = {3},
	journal = {Conservation Biology},
	author = {Lawler, Joshua J. and Ackerly, David D. and Albano, Christine M. and Anderson, Mark G. and Dobrowski, Solomon Z. and Gill, Jacquelyn L. and Heller, Nicole E. and Pressey, Robert L. and Sanderson, Eric W. and Weiss, Stuart B.},
	year = {2015},
	pages = {618--629},
}

@misc{hulley_g_viirsnpp_2018,
	title = {{VIIRS}/{NPP} {Land} {Surface} {Temperature} and {Emissivity} {Daily} {L3} {Global} 1km {SIN} {Grid} {Day} {V001}},
	doi = {https://doi.org/10.5067/VIIRS/VNP21A1D.001},
	publisher = {NASA EOSDIS Land Processes Distributed Active Archive Center},
	author = {Hulley, G. and Hook, S.},
	year = {2018},
}

@article{xavier_new_2022,
	title = {New improved {Brazilian} daily weather gridded data (1961–2020)},
	volume = {42},
	doi = {10.1002/joc.7731},
	number = {16},
	journal = {International Journal of Climatology},
	author = {Xavier, Alexandre C. and Scanlon, Bridget R. and King, Carey W. and Alves, Aline I.},
	year = {2022},
	pages = {8390--8404},
}

@article{fick_worldclim_2017,
	title = {{WorldClim} 2: new 1-km spatial resolution climate surfaces for global land areas},
	volume = {37},
	doi = {10.1002/joc.5086},
	number = {12},
	journal = {International Journal of Climatology},
	author = {Fick, Stephen E. and Hijmans, Robert J.},
	year = {2017},
	pages = {4302--4315},
}

@article{karger_dirk_nikolaus_climatologies_2017,
	title = {Climatologies at high resolution for the earth's land surface areas},
	volume = {4},
	doi = {10.1038/sdata.2017.122},
	number = {1},
	journal = {Scientific Data},
	author = {Karger, Dirk Nikolaus and Conrad, Olaf and Böhner, Jürgen and Kawohl, Tobias and Kreft, Holger and Soria-Auza, Rodrigo Wilber and Zimmermann, Niklaus E. and Linder, H. Peter and Kessler, Michael},
	year = {2017},
	pages = {170122},
}

@article{lima-ribeiro_matheus_s_ecoclimate_2015,
	title = {Ecoclimate : a {Database} of {Climate} {Data} {From} {Multiple} {Models} for {Past} , {Present} , and {Future} for {Macroecologists} and {Biogeographers}},
	volume = {10},
	doi = {10.17161/bi.v10i0.4955},
	journal = {Biodiversity Informatics},
	author = {Lima-Ribeiro, Matheus S and Varela, Sara and González-Hernández, Javier and de Oliveira, Guilherme and Diniz-Filho, José Alexandre F and Terribile, Levi Carina},
	year = {2015},
	pages = {1--21},
}

@article{kearney_michael_r_microclim_2014,
	title = {Microclim: {Global} estimates of hourly microclimate based on long-term monthly climate averages},
	volume = {1},
	doi = {10.1038/sdata.2014.6},
	number = {1},
	journal = {Scientific Data},
	author = {Kearney, Michael R. and Isaac, Andrew P. and Porter, Warren P.},
	year = {2014},
	pages = {140006},
}

@article{loarie_scott_r_velocity_2009,
	title = {The velocity of climate change},
	volume = {462},
	doi = {10.1038/nature08649},
	number = {7276},
	journal = {Nature},
	author = {Loarie, Scott R. and Duffy, Philip B. and Hamilton, Healy and Asner, Gregory P. and Field, Christopher B. and Ackerly, David D.},
	year = {2009},
	pages = {1052--1055},
}

@article{williams_stephen_e_towards_2008,
	title = {Towards an integrated framework for assessing the vulnerability of species to climate change.},
	volume = {6},
	doi = {10.1371/journal.pbio.0060325},
	number = {12},
	journal = {PLoS biology},
	author = {Williams, Stephen E. and Shoo, Luke P. and Isaac, Joanne L. and Hoffmann, Ary A. and Langham, Gary},
	year = {2008},
	pages = {e325},
}

@article{dobrowski_climatic_2011,
	title = {A climatic basis for microrefugia: {The} influence of terrain on climate},
	volume = {17},
	doi = {10.1111/j.1365-2486.2010.02263.x},
	number = {2},
	journal = {Global Change Biology},
	author = {Dobrowski, Solomon Z.},
	year = {2011},
	note = {613 citations (Crossref) [2023-09-12]},
	pages = {1022--1035},
}

@article{anderson_mark_g_resilient_2023,
	title = {A resilient and connected network of sites to sustain biodiversity under a changing climate},
	volume = {120},
	doi = {10.1073/pnas.2204434119},
	number = {7},
	journal = {Proceedings of the National Academy of Sciences of the United States of America},
	author = {Anderson, Mark G. and Clark, Melissa and Olivero, Arlene P. and Barnett, Analie R. and Hall, Kimberly R. and Cornett, Meredith W. and Ahlering, Marissa and Schindel, Michael and Unnasch, Bob and Schloss, Carrie and Cameron, D. Richard},
	year = {2023},
	note = {4 citations (Crossref) [2023-09-12]},
	pages = {109},
}

@article{anderson_mark_g_estimating_2014,
	title = {Estimating climate resilience for conservation across geophysical settings},
	volume = {28},
	doi = {10.1111/cobi.12272},
	number = {4},
	journal = {Conservation Biology},
	author = {Anderson, Mark G. and Clark, Melissa and Sheldon, Arlene Olivero},
	year = {2014},
	note = {75 citations (Crossref) [2023-09-12]},
	pages = {959--970},
}

@misc{mapbiomas_project_collection_2020,
	title = {Collection 8 of the {Annual} {Series} of {Land} {Use} and {Land} {Cover} {Maps} of {Brazil}},
	url = {projects/mapbiomas-workspace/public/collection8/mapbiomas_collection80_integration_v1},
	author = {{MapBiomas Project}},
	year = {2023},
}


@misc{weiss_topographic_2001,
	address = {San Diego, CA, USA},
	type = {In {Poster} presentation},
	title = {Topographic position and landforms analysis},
	url = {http://www.jennessent.com/downloads/tpi-poster- tnc_18x22.pdf},
	author = {Weiss, A. C.},
	year = {2001},
}

@techreport{anderson_resilient_2012,
	title = {Resilient {Sites} for {Terrestrial} {Conservation} in the {Northeast} and {Mid}-{Atlantic} {Region}},
	institution = {The Nature Conservancy, Eastern Conservation Science},
	author = {Anderson, Mark G. and Clark, Melissa and Sheldon, Arlene O.},
	year = {2012},
	pages = {168},
}

@inproceedings{fels_cognitively-based_1996,
	address = {Santa Fe, New Mexico, USA},
	title = {A cognitively-based approach for hydrogeomorphic land classification using digital terrain models.},
	publisher = {National Center for Geographic Information and Analysis},
	author = {Fels, John E. and Matson, Kris C.},
	year = {1996},
}

@misc{olson_terrestrial_2017,
	title = {Terrestrial {Ecoregions} of the {World}: {A} {New} {Map} of {Life} on {Earth}},
	abstract = {This map depicts the 825 terrestrial ecoregions of the globe. Ecoregions are relatively large units of land containing distinct assemblages of natural communities and species, with boundaries that approximate the original extent of natural communities prior to major land-use change. This comprehensive, global map provides a useful framework for conducting biogeographical or macroecological research, for identifying areas of outstanding biodiversity and conservation priority, for assessing the representation and gaps in conservation efforts worldwide, and for communicating the global distribution of natural communities on earth. We have based ecoregion delineations on hundreds of previous biogeographical studies, and refined and synthesized existing information in regional workshops over 10 years to assemble the global dataset. Ecoregions are nested within two higher-order classifications: biomes (14) and biogeographic realms (8). Together, these nested classification levels provide a framework for comparison among units and the identification of representative habitats and species assemblages. Ecoregions have increasingly been adopted by research scientists, conservation organizations, and donors as a framework for analyzing biodiversity patterns, assessing conservation priorities, and directing effort and support (Ricketts et al. 1999a; Wikramanayake et al. 2001; Ricketts et al. 1999b; Olson \& Dinerstein 1998; Groves et al. 2000; Rosenzweig et al. 2003; and Luck et al. 2003). More on the approach to ecoregion mapping, the logic and design of the framework, and previous and potential uses are discusses in Olson et al. (2001) and Ricketts et al. (1999a).},
	publisher = {BioScience},
	author = {Olson, D.M. and Dinerstein, E.D. and Wikramanayake, N.D and {Burgess, G.V.N.} and {Powell, E.C.} and {Underwood, J.A.} and {D'Amico, I.} and {Itoua, H.E.}},
	year = {2017},
}

@article{yamazaki_high-accuracy_2017,
	title = {A high-accuracy map of global terrain elevations: {Accurate} {Global} {Terrain} {Elevation} map},
	volume = {44},
	issn = {00948276},
	shorttitle = {A high-accuracy map of global terrain elevations},
	url = {http://doi.wiley.com/10.1002/2017GL072874},
	doi = {10.1002/2017GL072874},
	language = {en},
	number = {11},
	urldate = {2023-06-06},
	journal = {Geophysical Research Letters},
	author = {Yamazaki, Dai and Ikeshima, Daiki and Tawatari, Ryunosuke and Yamaguchi, Tomohiro and O'Loughlin, Fiachra and Neal, Jeffery C. and Sampson, Christopher C. and Kanae, Shinjiro and Bates, Paul D.},
	year = {2017},
	pages = {5844--5853},
}

@techreport{anderson_resilient_2016,
	title = {Resilient {Sites} for {Terrestrial} {Conservation} in {Eastern} {North} {America}},
	language = {en},
	institution = {The Nature Conservancy, Eastern Conservation Science},
	author = {Anderson, Mark G. and Barnett, Analie and Clark, Melissa and Sheldon, Arlene Olivero and Prince, John},
	year = {2016},
	pages = {186},
}

@article{yamazaki_merit_2019,
	title = {{MERIT} {Hydro}: {A} {High}‐{Resolution} {Global} {Hydrography} {Map} {Based} on {Latest} {Topography} {Dataset}},
	volume = {55},
	issn = {0043-1397, 1944-7973},
	shorttitle = {{MERIT} {Hydro}},
	url = {https://onlinelibrary.wiley.com/doi/10.1029/2019WR024873},
	doi = {10.1029/2019WR024873},
	language = {en},
	number = {6},
	urldate = {2023-06-06},
	journal = {Water Resources Research},
	author = {Yamazaki, Dai and Ikeshima, Daiki and Sosa, Jeison and Bates, Paul D. and Allen, George H. and Pavelsky, Tamlin M.},
	month = jun,
	year = {2019},
	pages = {5053--5073},
}

@misc{gumbricht_tropical_2017,
	title = {Tropical and subtropical wetlands distribution version 2},
	url = {https://data.cifor.org/dataset.xhtml?persistentId=doi:10.17528/CIFOR/DATA.00058},
	doi = {10.17528/cifor/data.00058},
	abstract = {Wetlands are important providers of ecosystem services and key regulators of climate change. They positively contribute to global warming through their greenhouse gas emissions, and negatively through the accumulation of organic material in histosols, particularly in peatlands. Our understanding of wetlands’ services is currently constrained by limited knowledge on their distribution, extent, volume, inter-annual flood variability, and disturbance levels. We present an expert system approach to estimate wetland and peatland areas, depths and volumes, which relies on three biophysical indices related to wetland and peat formation: 1. Long-term water supply exceeding atmospheric water demand; 2. Annually or seasonally water-logged soils; 3. A geomorphological position where water is supplied and retained.
  
  The dataset is version 2 with significant improvements compare to previous version. It shows distribution of wetland, peatland and peat depth that covers the tropics and sub tropics (40° N to 60° S; 180° E to -180° W), excluding small islands. It was mapped in 231 meters spatial resolution. The dataset can be viewed in this interactive map: http://www.cifor.org/global-wetlands/.},
	language = {en},
	urldate = {2023-05-26},
	author = {Gumbricht, T. and Román-Cuesta, R. M. and Verchot, L. V. and Herold, M. and Wittmann, F. and Householder, E. and Herold, N. and Murdiyarso, D.},
	year = {2017},
	doi = {10.17528/cifor/data.00058},
}

@article{anderson_resilient_2016-1,
	title = {Resilient and {Connected} {Landscapes} for {Terrestrial} {Conservation}},
	language = {en},
	author = {Anderson, Mark G. and Barnett, Analie and Clark, Melissa and Prince, Jeremy and Sheldon, Arlene Olivero and Vickery, B.},
	year = {2016},
	file = {Anderson et al_2016_Resilient and Connected Landscapes for Terrestrial Conservation.pdf:/home/lucasjardim/Zotero/storage/U6MCGLK9/Anderson et al_2016_Resilient and Connected Landscapes for Terrestrial Conservation.pdf:application/pdf},
}

@article{anderson_estimating_2014,
	title = {Estimating {Climate} {Resilience} for {Conservation} across {Geophysical} {Settings}},
	volume = {28},
	issn = {0888-8892, 1523-1739},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/cobi.12272},
	doi = {10.1111/cobi.12272},
	abstract = {Conservationists need methods to conserve biological diversity while allowing species and communities to rearrange in response to a changing climate. We developed and tested such a method for northeastern North America that we based on physical features associated with ecological diversity and site resilience to climate change. We comprehensively mapped 30 distinct geophysical settings based on geology and elevation. Within each geophysical setting, we identified sites that were both connected by natural cover and that had relatively more microclimates indicated by diverse topography and elevation gradients. We did this by scoring every 405 ha hexagon in the region for these two characteristics and selecting those that scored {\textgreater}SD 0.5 above the mean combined score for each setting. We hypothesized that these high-scoring sites had the greatest resilience to climate change, and we compared them with sites selected by The Nature Conservancy for their high-quality rare species populations and natural community occurrences. High-scoring sites captured significantly more of the biodiversity sites than expected by chance (p {\textless} 0.0001): 75\% of the 414 target species, 49\% of the 4592 target species locations, and 53\% of the 2170 target community locations. Calcareous bedrock, coarse sand, and fine silt settings scored markedly lower for estimated resilience and had low levels of permanent land protection (average 7\%). Because our method identifies—for every geophysical setting—sites that are the most likely to retain species and functions longer under a changing climate, it reveals natural strongholds for future conservation that would also capture substantial existing biodiversity and correct the bias in current secured lands.},
	language = {en},
	number = {4},
	urldate = {2022-12-07},
	journal = {Conservation Biology},
	author = {Anderson, Mark G. and Clark, Melissa and Sheldon, Arlene Olivero},
	month = aug,
	year = {2014},
	note = {tex.ids= anderson\_estimating\_2014-1
\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/cobi.12272},
	keywords = {Áreas protegidas, biodiversidad, biodiversity, cambio climático, climate change, conectividad, connectivity, conservation planning, fragmentación, fragmentation, geología, geology, Norteamérica, North America, planeación de la conservación, protected areas},
	pages = {959--970},
	file = {Anderson et al. - 2014 - Estimating Climate Resilience for Conservation acr.pdf:/home/lucasjardim/Zotero/storage/RFNFLQ4H/Anderson et al. - 2014 - Estimating Climate Resilience for Conservation acr.pdf:application/pdf;Full Text PDF:/home/lucasjardim/Zotero/storage/REFXWETM/Anderson et al. - 2014 - Estimating Climate Resilience for Conservation acr.pdf:application/pdf;pnas.2204434119.sapp.pdf:/home/lucasjardim/Zotero/storage/YAVKN8AF/pnas.2204434119.sapp.pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/KQX92JK2/cobi.html:text/html},
}

@techreport{mcrae_conserving_2016,
	title = {Conserving {Nature}’s {Stage}: {Mapping} {Omnidirectional} {Connectivity} for {Resilient} {Terrestrial} {Landscapes} in the {Pacific} {Northwest}},
	shorttitle = {Conserving {Nature}’s {Stage}},
	url = {http://rgdoi.net/10.13140/RG.2.1.4158.6166},
	language = {en},
	urldate = {2023-03-08},
	author = {McRae, Brad and K. Popper and A. Jones and M. Schindel and S. Buttrick and K. Hall and R.S. Unnasch and J. Platt},
	year = {2016},
	note = {Publisher: The Nature Conservancy. DOI: 10.13140/RG.2.1.4158.6166},
	file = {McRae et al. - 2016 - Conserving Nature’s Stage Mapping Omnidirectional.pdf:/home/lucasjardim/Zotero/storage/E726MTNM/McRae et al. - 2016 - Conserving Nature’s Stage Mapping Omnidirectional.pdf:application/pdf},
}

@article{mcgarigal_landscape_2018,
	title = {A landscape index of ecological integrity to inform landscape conservation},
	volume = {33},
	issn = {1572-9761},
	url = {https://doi.org/10.1007/s10980-018-0653-9},
	doi = {10.1007/s10980-018-0653-9},
	abstract = {Conservation planning is increasingly using “coarse filters” based on the idea of conserving “nature’s stage”. One such approach is based on ecosystems and the concept of ecological integrity, although myriad ways exist to measure ecological integrity.},
	language = {en},
	number = {7},
	urldate = {2023-05-15},
	journal = {Landscape Ecology},
	author = {McGarigal, Kevin and Compton, Bradley W. and Plunkett, Ethan B. and DeLuca, William V. and Grand, Joanna and Ene, Eduard and Jackson, Scott D.},
	month = jul,
	year = {2018},
	note = {tex.ids= mcgarigal\_landscape\_2018-1},
	keywords = {Conservation planning, Coarse filter, Ecological assessment, Landscape conservation design, Landscape metrics, Landscape pattern},
	pages = {1029--1048},
	file = {McGarigal et al_2018_A landscape index of ecological integrity to inform landscape conservation.pdf:/home/lucasjardim/Zotero/storage/KIEQYQTG/McGarigal et al_2018_A landscape index of ecological integrity to inform landscape conservation.pdf:application/pdf},
}

@techreport{noauthor_pnw_nodate,
	title = {{PNW} {Terrestrial} {Climate} {Resilience} {Report} {March3} 2015.pdf},
	url = {https://conservationgateway.org/ConservationByGeography/NorthAmerica/UnitedStates/oregon/science/Documents/PNW%20Terrestrial%20Climate%20Resilience%20Report%20March3%202015.pdf},
	urldate = {2023-04-07},
	file = {PNW Terrestrial Climate Resilience Report March3 2015.pdf:/home/lucasjardim/Zotero/storage/AXK59ZPL/PNW Terrestrial Climate Resilience Report March3 2015.pdf:application/pdf},
}

@book{buttrick_conserving_2015,
	title = {Conserving {Nature}'s {Stage}: {Identifying} {Resilient} {Terrestrial} {Landscapes} in the {Pacific} {Northwest}},
	shorttitle = {Conserving {Nature}'s {Stage}},
	abstract = {The purpose of this project is to identify the most resilient sites in the Northwest that will collectively and individually best sustain terrestrial biodiversity even as the changing climate alters current distribution patterns. The central idea is that by mapping key geophysical features and evaluating them for landscape characteristics that buffer against climate change (topoclimate and permeability), we can identify the most resilient places in the terrestrial landscape in order to guide future conservation investments. 
This report and all the associated data and projects are available at: http://nature.ly/resilienceNW},
	author = {Buttrick, Steve and Popper, Ken and McRae, Brad and Unnasch, Bob and Schindel, Michael and Jones, Aaron and Platt, Jim},
	month = feb,
	year = {2015},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/FWK46IDQ/Buttrick et al. - 2015 - Conserving Nature's Stage Identifying Resilient T.pdf:application/pdf},
}

@article{rayfield_connectivity_2011,
	title = {Connectivity for conservation: a framework to classify network measures},
	volume = {92},
	number = {4},
	journal = {Ecology},
	author = {Rayfield, Bronwyn and Fortin, Marie-Josée and Fall, Andrew},
	year = {2011},
	keywords = {fragmentation, corridors, graph theory, dispersal, landscape connectivity, circuit theory, effective distance, gene flow, habitat fragmentation, isolation, metapopulation theory, reserve design, clutch size, conservation management, egg size, fitness function, habitat resistance, inter-patch movement, least-cost path, maternal care, maternal effects, network theory, offspring fitness, optimal offspring size, optimality, parental care, parental investment, weibull-1 model},
	pages = {847--858},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/HVJWDHA6/09-2190.html:text/html},
}

@article{cushman_multi-taxa_2012,
	title = {Multi-taxa population connectivity in the {Northern} {Rocky} {Mountains}},
	volume = {231},
	doi = {10.1016/j.ecolmodel.2012.02.011},
	abstract = {Effective broad-spectrum biodiversity conservation requires that conservation strategies simultaneously meet the needs of multiple species. However, little is known about how maintaining habitat connectivity for one species or species group may also act as an umbrella for other species. We evaluated the degree to which predicted connected habitat for each of 144 different hypothetical organisms expressing range of dispersal abilities and ecological responses to elevation, roads and land cover function as an indicators of connected habitat for the others in the U.S. Northern Rocky Mountains. We used resistant kernel modeling to map the extent of the study area predicted to be connected by dispersal for each species. At relatively large dispersal abilities there was extensive overlap between connected habitat for most organisms and much of the study area is predicted to provide connected habitat for all hypothetical organisms simultaneously. In contrast, at low to medium dispersal abilities there was much less intersection of habitat connected by dispersal. We found that habitat specialists with limited dispersal ability are weak indicators of others, and likewise are weakly indicated by others. We evaluated the effectiveness of three carnivores as connectivity umbrellas for many species. All three carnivore species performed significantly worse as connectivity umbrellas than the average across the simulated species. These species are associated with high elevation forested habitats. It is the low elevation and non-forest habitats that are most at risk of habitat loss and fragmentation in the study area, suggesting that a carnivore umbrella may miss many species most at risk.},
	journal = {Ecological Modelling},
	author = {Cushman, Samuel and Landguth, Erin},
	month = apr,
	year = {2012},
	pages = {101--112},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/KYFBPFCP/Cushman and Landguth - 2012 - Multi-taxa population connectivity in the Northern.pdf:application/pdf},
}

@article{cushman_gene_2006,
	title = {Gene {Flow} in {Complex} {Landscapes}: {Testing} {Multiple} {Hypotheses} with {Causal} {Modeling}},
	volume = {168},
	issn = {0003-0147, 1537-5323},
	shorttitle = {Gene {Flow} in {Complex} {Landscapes}},
	url = {http://www.journals.uchicago.edu/doi/10.1086/506976},
	doi = {10.1086/506976},
	abstract = {Predicting population-level effects of landscape change depends on identifying factors that influence population connectivity in complex landscapes. However, most putative movement corridors and barriers have not been based on empirical data. In this study, we identify factors that influence connectivity by comparing patterns of genetic similarity among 146 black bears (Ursus americanus), sampled across a 3,000-km2 study area in northern Idaho, with 110 landscape-resistance hypotheses. Genetic similarities were based on the pairwise percentage dissimilarity among all individuals based on nine microsatellite loci (average expected heterozygosity p 0.79). Landscape-resistance hypotheses describe a range of potential relationships between movement cost and land cover, slope, elevation, roads, Euclidean distance, and a putative movement barrier. These hypotheses were divided into seven organizational models in which the influences of barriers, distance, and landscape features were statistically separated using partial Mantel tests. Only one of the competing organizational models was fully supported: patterns of genetic structure are primarily related to landscape gradients of land cover and elevation. The alternative landscape models, isolation by barriers and isolation by distance, are not supported. In this black bear population, gene flow is facilitated by contiguous forest cover at middle elevations.},
	language = {en},
	number = {4},
	urldate = {2023-03-24},
	journal = {The American Naturalist},
	author = {Cushman, Samuel A. and McKelvey, Kevin S. and Hayden, Jim and Schwartz, Michael K.},
	month = oct,
	year = {2006},
	pages = {486--499},
	file = {Cushman et al. - 2006 - Gene Flow in Complex Landscapes Testing Multiple .pdf:/home/lucasjardim/Zotero/storage/C2AI3BEC/Cushman et al. - 2006 - Gene Flow in Complex Landscapes Testing Multiple .pdf:application/pdf},
}

@article{williams_incorporating_2020,
	title = {Incorporating connectivity into conservation planning for the optimal representation of multiple species and ecosystem services},
	volume = {34},
	issn = {1523-1739},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/cobi.13450},
	doi = {10.1111/cobi.13450},
	abstract = {Conservation planning tends to focus on protecting species’ ranges or landscape connectivity but seldom both—particularly in the case of diverse taxonomic assemblages and multiple planning goals. Therefore, information on potential trade-offs between maintaining landscape connectivity and achieving other conservation objectives is lacking. We developed an optimization approach to prioritize the maximal protection of species’ ranges, ecosystem types, and forest carbon stocks, while also including habitat connectivity for range-shifting species and dispersal corridors to link protected area. We applied our approach to Sabah, Malaysia, where the state government mandated an increase in protected-area coverage of approximately 305,000 ha but did not specify where new protected areas should be. Compared with a conservation planning approach that did not incorporate the 2 connectivity features, our approach increased the protection of dispersal corridors and elevational connectivity by 13\% and 21\%, respectively. Coverage of vertebrate and plant species’ ranges and forest types were the same whether connectivity was included or excluded. Our approach protected 2\% less forest carbon and 3\% less butterfly range than when connectivity features were not included. Hence, the inclusion of connectivity into conservation planning can generate large increases in the protection of landscape connectivity with minimal loss of representation of other conservation targets.},
	language = {en},
	number = {4},
	urldate = {2023-03-31},
	journal = {Conservation Biology},
	author = {Williams, Sara H. and Scriven, Sarah A. and Burslem, David F. R. P. and Hill, Jane K. and Reynolds, Glen and Agama, Agnes L. and Kugan, Frederick and Maycock, Colin R. and Khoo, Eyen and Hastie, Alexander Y. L. and Sugau, John B. and Nilus, Reuben and Pereira, Joan T. and Tsen, Sandy L. T. and Lee, Leung Y. and Juiling, Suzika and Hodgson, Jenny A. and Cole, Lydia E. S. and Asner, Gregory P. and Evans, Luke J. and Brodie, Jedediah F.},
	year = {2020},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/cobi.13450},
	keywords = {cambio climático, climate change, connectivity, corridors, corredores, Borneo, conectividades, deforestación, deforestation, habitat loss, pérdida de hábitat, planeación sistemática de la conservación, rainforest, selva, systematic conservation planning},
	pages = {934--942},
	file = {Full Text:/home/lucasjardim/Zotero/storage/TLLI2F77/Williams et al. - 2020 - Incorporating connectivity into conservation plann.pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/YDPHBML5/cobi.html:text/html},
}

@article{urban_landscape_2001,
	title = {Landscape {Connectivity}: {A} {Graph}-{Theoretic} {Perspective}},
	volume = {82},
	issn = {1939-9170},
	shorttitle = {Landscape {Connectivity}},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1890/0012-9658%282001%29082%5B1205%3ALCAGTP%5D2.0.CO%3B2},
	doi = {10.1890/0012-9658(2001)082[1205:LCAGTP]2.0.CO;2},
	abstract = {Ecologists are familiar with two data structures commonly used to represent landscapes. Vector-based maps delineate land cover types as polygons, while raster lattices represent the landscape as a grid. Here we adopt a third lattice data structure, the graph. A graph represents a landscape as a set of nodes (e.g., habitat patches) connected to some degree by edges that join pairs of nodes functionally (e.g., via dispersal). Graph theory is well developed in other fields, including geography (transportation networks, routing applications, siting problems) and computer science (circuitry and network optimization). We present an overview of basic elements of graph theory as it might be applied to issues of connectivity in heterogeneous landscapes, focusing especially on applications of metapopulation theory in conservation biology. We develop a general set of analyses using a hypothetical landscape mosaic of habitat patches in a nonhabitat matrix. Our results suggest that a simple graph construct, the minimum spanning tree, can serve as a powerful guide to decisions about the relative importance of individual patches to overall landscape connectivity. We then apply this approach to an actual conservation scenario involving the threatened Mexican Spotted Owl (Strix occidentalis lucida). Simulations with an incidence-function metapopulation model suggest that population persistence can be maintained despite substantial losses of habitat area, so long as the minimum spanning tree is protected. We believe that graph theory has considerable promise for applications concerned with connectivity and ecological flows in general. Because the theory is already well developed in other disciplines, it might be brought to bear immediately on pressing ecological applications in conservation biology and landscape ecology.},
	language = {en},
	number = {5},
	urldate = {2023-03-15},
	journal = {Ecology},
	author = {Urban, Dean and Keitt, Timothy},
	year = {2001},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1890/0012-9658\%282001\%29082\%5B1205\%3ALCAGTP\%5D2.0.CO\%3B2},
	keywords = {connectivity, graph theory, dispersal, habitat fragmentation, metapopulation theory, conservation biology, habitat patches and landscape connectivity, habitat pattern, landscape ecology, minimum spanning tree, Strix occidentalis lucidus.},
	pages = {1205--1218},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/KDJAZR7C/0012-9658(2001)082[1205LCAGTP]2.0.html:text/html},
}

@article{diniz_landscape_2020,
	title = {Landscape connectivity modeling from the perspective of animal dispersal},
	volume = {35},
	issn = {0921-2973, 1572-9761},
	url = {http://link.springer.com/10.1007/s10980-019-00935-3},
	doi = {10.1007/s10980-019-00935-3},
	abstract = {Context Dispersal plays a key role in linking populations, habitat (re)-colonization, and species range expansion. As fragmentation and habitat loss are ubiquitous threats and can disrupt dispersal, landscape connectivity modeling has become a valuable tool in conservation planning.},
	language = {en},
	number = {1},
	urldate = {2023-04-11},
	journal = {Landscape Ecology},
	author = {Diniz, Milena F. and Cushman, Samuel A. and Machado, Ricardo B. and De Marco Júnior, Paulo},
	month = jan,
	year = {2020},
	pages = {41--58},
	file = {Diniz et al. - 2020 - Landscape connectivity modeling from the perspecti.pdf:/home/lucasjardim/Zotero/storage/67VRNZHY/Diniz et al. - 2020 - Landscape connectivity modeling from the perspecti.pdf:application/pdf},
}

@article{beier_toward_2011,
	title = {Toward {Best} {Practices} for {Developing} {Regional} {Connectivity} {Maps}},
	volume = {25},
	issn = {1523-1739},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1523-1739.2011.01716.x},
	doi = {10.1111/j.1523-1739.2011.01716.x},
	abstract = {Abstract: To conserve ecological connectivity (the ability to support animal movement, gene flow, range shifts, and other ecological and evolutionary processes that require large areas), conservation professionals need coarse-grained maps to serve as decision-support tools or vision statements and fine-grained maps to prescribe site-specific interventions. To date, research has focused primarily on fine-grained maps (linkage designs) covering small areas. In contrast, we devised 7 steps to coarsely map dozens to hundreds of linkages over a large area, such as a nation, province, or ecoregion. We provide recommendations on how to perform each step on the basis of our experiences with 6 projects: California Missing Linkages (2001), Arizona Wildlife Linkage Assessment (2006), California Essential Habitat Connectivity (2010), Two Countries, One Forest (northeastern United States and southeastern Canada) (2010), Washington State Connected Landscapes (2010), and the Bhutan Biological Corridor Complex (2010). The 2 most difficult steps are mapping natural landscape blocks (areas whose conservation value derives from the species and ecological processes within them) and determining which pairs of blocks can feasibly be connected in a way that promotes conservation. Decision rules for mapping natural landscape blocks and determining which pairs of blocks to connect must reflect not only technical criteria, but also the values and priorities of stakeholders. We recommend blocks be mapped on the basis of a combination of naturalness, protection status, linear barriers, and habitat quality for selected species. We describe manual and automated procedures to identify currently functioning or restorable linkages. Once pairs of blocks have been identified, linkage polygons can be mapped by least-cost modeling, other approaches from graph theory, or individual-based movement models. The approaches we outline make assumptions explicit, have outputs that can be improved as underlying data are improved, and help implementers focus strictly on ecological connectivity.},
	language = {en},
	number = {5},
	urldate = {2023-03-31},
	journal = {Conservation Biology},
	author = {Beier, Paul and Spencer, Wayne and Baldwin, Robert F. and McRAE, Brad H.},
	year = {2011},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1523-1739.2011.01716.x},
	keywords = {conectividad, connectivity, conservation planning, conexiones de vida silvestre, cooperativas de conservación del paisaje, corridors, especies focales, focal species, landscape conservation cooperatives, planificación de la conservación, wildlife linkages},
	pages = {879--892},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/993W9PJG/j.1523-1739.2011.01716.html:text/html},
}

@article{cushman_evaluating_2012,
	title = {Evaluating the sufficiency of protected lands for maintaining wildlife population connectivity in the {U}.{S}. northern {Rocky} {Mountains}},
	volume = {18},
	doi = {10.1111/j.1472-4642.2012.00895.x},
	abstract = {Aim The goal of this study was to evaluate the sufficiency of the network of protected lands in the U.S. northern Rocky Mountains in providing protection for habitat connectivity for 105 hypothetical organisms. A large proportion of the landscape falls into one of several categories of protected lands. However, protected lands in the region are primarily higher elevation forest and mountain habitats. Little is known about how the network of protected lands may maintain connectivity for a broad spectrum of species expressing different habitat requirements and dispersal abilities. Location The study was conducted across the states of Montana and northern Idaho, USA, comprising an area of 30.2 million hectares.},
	journal = {Diversity and Distributions},
	author = {Cushman, Samuel and Landguth, Erin and Flather, Curtis},
	month = sep,
	year = {2012},
	pages = {873--884},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/K4WGUHYW/Cushman et al. - 2012 - Evaluating the sufficiency of protected lands for .pdf:application/pdf},
}

@article{boitani_ecological_2007,
	title = {Ecological {Networks} as {Conceptual} {Frameworks} or {Operational} {Tools} in {Conservation}},
	volume = {21},
	issn = {1523-1739},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1523-1739.2007.00828.x},
	doi = {10.1111/j.1523-1739.2007.00828.x},
	abstract = {Abstract: The establishment of ecological networks (ENs) has been proposed as an ideal way to counteract the increasing fragmentation of natural ecosystems and as a necessary complement to the establishment of protected areas for biodiversity conservation. This conservation tool, which comprises core areas, corridors, and buffer areas, has attracted the attention of several national and European institutions. It is thought that ENs can connect habitat patches and thus enable species to move across unsuitable areas. In Europe, however, ENs are proposed as an oversimplification of complex ecological concepts, and we maintain that they are of limited use for biodiversity conservation for several reasons. The ENs are species specific and operate on species-dependent scales. In addition, the information needed for their implementation is only available for a handful of species. To overcome these limitations, ENs have been proposed on a landscape scale (and for selected “focal” species), but there is no indication that the structural composition of core areas, corridors, and buffer areas could ensure the functional connectivity and improve the viability of more than a few species. The theory behind ENs fails to provide sufficient practical information on how to build them (e.g., width, shape, structure, content). In fact, no EN so far has been validated in practice (ensuring connectivity and increasing overall biodiversity conservation), and there are no signs that validation will be possible in the near future. In view of these limitations, it is difficult to justify spending economic and political resources on building systems that are at best working hypotheses that cannot be evaluated on a practical level.},
	language = {en},
	number = {6},
	urldate = {2023-03-31},
	journal = {Conservation Biology},
	author = {Boitani, Luigi and Falcucci, Alessandra and Maiorano, Luigi and Rondinini, Carlo},
	year = {2007},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1523-1739.2007.00828.x},
	keywords = {conectividad, connectivity, corridors, especies focales, focal species, áreas nucleo, core areas, corredores, ecological networks, redes ecológicas},
	pages = {1414--1422},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/QYP8TA3N/Boitani et al. - 2007 - Ecological Networks as Conceptual Frameworks or Op.pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/46KI55PA/j.1523-1739.2007.00828.html:text/html},
}

@article{martin_coastal_1996,
	title = {Coastal {Quaternary} {Formations} of the {Southern} {Part} of the {State} of {Espírito} {Santo} ({Brazil})},
	volume = {68},
	abstract = {A preliminary geologic map of the Quaternary deposits, situated at the Southern half of the State of Espirito Santo coastal plain, is presented in this paper. They are represented by two generations of wave-built terraces, which have been originated after 123,000 years and 5,100 years B.P., by paleolagoonal deposits related to the last high sea-level period and by alluvial, coastal marsh and mangrove deposits of Holocene age. The evolutionary model valid for this sector of coast is quite similar to that previously established for other sectors of the Brazilian coast. (Résumé d'auteur)},
	journal = {Anais da Academia Brasileira de Ciencias},
	author = {Martin, Louis and Suguio, F. and Flexor, Jean and Archanjo, J.L.},
	month = jan,
	year = {1996},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/UE2T4K9G/Martin et al. - 1996 - Coastal Quaternary Formations of the Southern Part.pdf:application/pdf},
}

@article{luiz_geomorphology_2016,
	title = {Geomorphology {Drives} {Amphibian} {Beta} {Diversity} in {Atlantic} {Forest} {Lowlands} of {Southeastern} {Brazil}},
	volume = {11},
	issn = {1932-6203},
	url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0153977},
	doi = {10.1371/journal.pone.0153977},
	abstract = {Beta diversity patterns are the outcome of multiple processes operating at different scales. Amphibian assemblages seem to be affected by contemporary climate and dispersal-based processes. However, historical processes involved in present patterns of beta diversity remain poorly understood. We assess and disentangle geomorphological, climatic and spatial drivers of amphibian beta diversity in coastal lowlands of the Atlantic Forest, southeastern Brazil. We tested the hypothesis that geomorphological factors are more important in structuring anuran beta diversity than climatic and spatial factors. We obtained species composition via field survey (N = 766 individuals), museum specimens (N = 9,730) and literature records (N = 4,763). Sampling area was divided in four spatially explicit geomorphological units, representing historical predictors. Climatic descriptors were represented by the first two axis of a Principal Component Analysis. Spatial predictors in different spatial scales were described by Moran Eigenvector Maps. Redundancy Analysis was implemented to partition the explained variation of species composition by geomorphological, climatic and spatial predictors. Moreover, spatial autocorrelation analyses were used to test neutral theory predictions. Beta diversity was spatially structured in broader scales. Shared fraction between climatic and geomorphological variables was an important predictor of species composition (13\%), as well as broad scale spatial predictors (13\%). However, geomorphological variables alone were the most important predictor of beta diversity (42\%). Historical factors related to geomorphology must have played a crucial role in structuring amphibian beta diversity. The complex relationships between geomorphological history and climatic gradients generated by the Serra do Mar Precambrian basements were also important. We highlight the importance of combining spatially explicit historical and contemporary predictors for understanding and disentangling major drivers of beta diversity patterns.},
	language = {en},
	number = {5},
	urldate = {2023-03-07},
	journal = {PLOS ONE},
	author = {Luiz, Amom Mendes and Leão-Pires, Thiago Augusto and Sawaya, Ricardo J.},
	month = may,
	year = {2016},
	note = {Publisher: Public Library of Science},
	keywords = {Geomorphology, Amphibians, Brazil, Community structure, Paleoclimatology, Phylogeography, Precambrian supereon, Spatial autocorrelation},
	pages = {e0153977},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/ZTRNSA4B/Luiz et al. - 2016 - Geomorphology Drives Amphibian Beta Diversity in A.pdf:application/pdf},
}

@article{carnaval_stability_2009,
	title = {Stability predicts genetic diversity in the {Brazilian} {Atlantic} {Forest} {Hotspot}},
	volume = {323},
	url = {https://www.science.org/doi/10.1126/science.1166955},
	doi = {10.1126/science.1166955},
	abstract = {Biodiversity hotspots, representing regions with high species endemism and conservation threat, have been mapped globally. Yet, biodiversity distribution data from within hotspots are too sparse for effective conservation in the face of rapid environmental change. Using frogs as indicators, ecological niche models under paleoclimates, and simultaneous Bayesian analyses of multispecies molecular data, we compare alternative hypotheses of assemblage-scale response to late Quaternary climate change. This reveals a hotspot within the Brazilian Atlantic forest hotspot. We show that the southern Atlantic forest was climatically unstable relative to the central region, which served as a large climatic refugium for neotropical species in the late Pleistocene. This sets new priorities for conservation in Brazil and establishes a validated approach to biodiversity prediction in other understudied, species-rich regions.},
	number = {5915},
	urldate = {2023-03-14},
	journal = {Science},
	author = {Carnaval, Ana Carolina and Hickerson, Michael J. and Haddad, Célio F. B. and Rodrigues, Miguel T. and Moritz, Craig},
	month = feb,
	year = {2009},
	note = {Publisher: American Association for the Advancement of Science},
	keywords = {doctorado parte2: coexistence patterns},
	pages = {785--789},
	file = {Carnaval et al_2009_Stability predicts genetic diversity in the Brazilian Atlantic Forest Hotspot.pdf:/home/lucasjardim/Zotero/storage/3W8JC26C/Carnaval et al_2009_Stability predicts genetic diversity in the Brazilian Atlantic Forest Hotspot.pdf:application/pdf},
}

@article{correia_key_2020,
	title = {Key {Points} about {North} and {Northern} {Brazilian} {Restinga}: a {Review} of {Geomorphological} {Characterization}, {Phytophysiognomies} {Classification}, and {Studies}’ {Tendencies}},
	volume = {86},
	issn = {1874-9372},
	shorttitle = {Key {Points} about {North} and {Northern} {Brazilian} {Restinga}},
	url = {https://doi.org/10.1007/s12229-020-09230-2},
	doi = {10.1007/s12229-020-09230-2},
	abstract = {Brazil has a pronounced complexity in coastal region, which affects the restingas’ diversity patterns. Therefore, we reviewed and systematized the knowledge about the attributes influencing the characterization and, eventually, the biases in the identification of restingas’ diversity patterns, mainly focusing in the Brazilian North and Northeast regions. Coastal geomorphology is one of the key attributes contributing to this complexity, acting as an environmental filter for the colonization of plant species. According to the standard classification, the Brazilian coast can be divided into five regions (North, Northeast, East, Southeast, and South). Another relevant attribute is phytophysiognomies, characterized by the collective characteristics of vegetation in a region, and for which exists six different classifications. The one proposed by Silva and Britez (2005) presents the best trade-off between specificity and generality by allowing both adequate local characterization and systematization for regional comparisons. Despite the length of the North and Northeast coast of Brazil, only 44 studies were conducted in these regions. The sampled areas were typically close to the state capitals, showing that logistical factors interfere with the selection of study areas. Besides, almost half of the studies omitted essential information such as the total area and sampling time, making it challenging to assess sample sufficiency and reproducibility. Another observed bias was a higher species richness in studies that partially or entirely used herbarium data. These gaps and biases on information constrain the ecological synthesis of restinga’ biodiversity patterns, mainly in larger spatial scales than those in which individual studies were conducted.},
	language = {en},
	number = {3},
	urldate = {2023-03-07},
	journal = {The Botanical Review},
	author = {Correia, Bruna Emanuele Freire and de Almeida, Eduardo Bezerra and Zanin, Marina},
	month = dec,
	year = {2020},
	keywords = {Amazon, Atlantic forest, Costal zones, Geomorphology, Herbarium, Phytophysiognomy},
	pages = {329--337},
}

@misc{noauthor_fundamentos_nodate,
	title = {Fundamentos da {Geomorfologia} {Costeira} do {Brasil} {Inter} e {SubTropical} {\textbar} {Revista} {Brasileira} de {Geomorfologia}},
	url = {https://rbgeomorfologia.org.br/rbg/article/view/67},
	urldate = {2023-03-07},
}

@article{shirani_automatic_2023,
	title = {Automatic {Landform} {Recognition}, {Extraction}, and {Classification} using {Kernel} {Pattern} {Modeling}},
	volume = {7},
	issn = {2509-8829},
	url = {https://doi.org/10.1007/s41651-022-00131-z},
	doi = {10.1007/s41651-022-00131-z},
	abstract = {Detection of terrain features more quickly and accurately is crucial in geosciences for the extracting and classifying landforms. Part of the local relief attributes would be lost in employing the conventional TPI (Topographic Position Index)-based methods to recognize terrain characteristics (landform recognition, extraction, and classification) due to use of the central tendency index (mean index). As a result, the automated recognition, extraction, and classification of terrain features (summit/ridge and pit/drainage) were performed in this research using the kernel pattern modeling based on digital elevation model (DEM) in the raster grid structure. Accordingly, three novel TPI-based algorithms including simple multi-level recognition system (SMRS), complex multi-level recognition system (CMRS), and central position recognition system (CPRS) were developed to recognize the terrain similarity to summit/ridgeline or terrain convex surfaces (and/or deviation from the pit/drainage or terrain concave surfaces). The algorithms were formulated and programmed using Python programming language and integrated in a software package as well. The results show that the SMRS algorithm tends to have more binary gradation (higher contrast) in smaller dimensions of the moving window, being problematic in some geovisual and cartographical applications. Output of the CPRS algorithm shows more continuity and better performance in the extraction of summit points in a vector data model format. All the three algorithms apply greater degree of generalization to the results as size of the moving window becomes larger. The accuracy assessment, sensitivity analysis, and possible sources of the errors were evaluated. Finally feature extraction and landform classification performed based on output results of the algorithms. The accuracy assessment and validation of the models were examined compared to the TPI and DEV (deviation from mean elevation) models by means of the D8 (for drainage path extraction) and inverted D8 (for ridgeline extraction) algorithms. Accordingly, all the developed algorithms perform better than the conventional method of TPI. The SMRS (88.87\%) and then CPRS (64.53\%) performed better than the other algorithms and TPI (56.83\%). The DEV performance (59.52\%) is similar to CMRS (59.19\%) and better than TPI. Based on the temporal sensitivity analysis, CMRS and SMRS are the most and least sensitive algorithms to the moving window size and spatial resolution variations, respectively. The possible error sources (edge effect, kernel local pattern, and point vectorization) were evaluated for the algorithms. Then, feature extraction (including summit/ridge or pit/drainage) was implemented on outputs of the algorithms. The CMRS and CPRS models displayed better performance in the vector point extraction compared to the other algorithms. A new landform classification system including 25 classes was also designed based on outputs of the developed algorithms combined with the terrain elevation variable. Landform classification maps generated based on the SMRS algorithm is visually different from what provided by the other algorithms and the CPRS landform classification performed better in distinguishing land units. The kernel size variations can modify landform recognition and classification scale in such a way that whatever size of the moving window is larger, the landform unit generalization is greater.},
	language = {en},
	number = {1},
	urldate = {2023-03-07},
	journal = {Journal of Geovisualization and Spatial Analysis},
	author = {Shirani, Kourosh and Solhi, Sina and Pasandi, Mehrdad},
	month = jan,
	year = {2023},
	keywords = {Geomorphometry, Automated mapping, Kernel pattern, Landform classification, Topographic position index (TPI)},
	pages = {2},
}

@article{modenesi-gauttieri_morphotectonics_2002,
	title = {Morphotectonics of a high plateau on the northwestern flank of the {Continental} {Rift} of southeastern {Brazil}},
	volume = {43},
	issn = {0169-555X},
	url = {https://www.sciencedirect.com/science/article/pii/S0169555X01001374},
	doi = {10.1016/S0169-555X(01)00137-4},
	abstract = {Integration of landform and structural analysis allowed the identification of Late Pleistocene–Holocene pulses of tectonic activity in the Campos do Jordão Plateau with ages and regimes similar to the ones from the continental rift. Fault reactivation along Precambrian shear zones give rise to a series of conspicuous morphotectonic features, determine the formation of stream piracy phenomena, and divide the plateau into smaller blocks. Recognition of these tectonic pulses as well as of their effects in landform development—particularly clear on the Campos de São Francisco at the highest area of the SE edge of the plateau—show that besides the climate-related Quaternary environmental changes significant neotectonic instability should be considered in the geomorphic evolution of the Campos do Jordão Plateau.},
	language = {en},
	number = {3},
	urldate = {2023-03-07},
	journal = {Geomorphology},
	author = {Modenesi-Gauttieri, May Christine and Takashi Hiruma, Silvio and Riccomini, Claudio},
	month = mar,
	year = {2002},
	keywords = {Hillslope evolution, Morphotectonics, Quaternary, Southeastern Brazil, Tropical plateau},
	pages = {257--271},
}

@incollection{schaefer_geological_2022,
	address = {Cham},
	title = {The {Geological}, {Geomorphological}, {Climatic}, and {Hydrological} {Background} of {Tropical} {Regoliths} and {Hostile} {Subsoils}: {The} {Brazilian} {Landmass}},
	isbn = {978-3-031-00317-2},
	shorttitle = {The {Geological}, {Geomorphological}, {Climatic}, and {Hydrological} {Background} of {Tropical} {Regoliths} and {Hostile} {Subsoils}},
	url = {https://doi.org/10.1007/978-3-031-00317-2_2},
	abstract = {In this chapter, we first describe the global nature of tropical regoliths, showing the remarkable differences with temperate latitudes counterparts. It is shown that most regoliths and subsoils in the tropics are polycyclic and not directly attributable to the present-day climates because of inherited features from past climatic conditions. The Brazilian land surface has one of the deepest regolith mantles at a planetary scale, resulting from a long-term evolution under terrestrial conditions and warm, tropical climates within a tropical latitudinal belt since the Jurassic. Depending on the parent rocks, this deep regolith is varied in the constitution, but mature pre-weathered sediments are commonly observed throughout the country. The two basic subsoils (kaolinitic/bauxitic and Fe-rich ferricretes) are described, and we offer a fresh perspective on the Brazilian view of these common tropical regoliths. We present a pioneering map of the distribution of Brazilian regoliths according to depth to the lithic contact, estimated from soil surveys. It indicates that the shallowest depths are found on resistant rock belts, especially along the quartzitic Espinhaço Range and scattered areas on granites and quartzites in the southern Amazon. The main area of shallow saprolites is those on granites and migmatites/gneiss from the semiarid northeast. Thus, climate and geological structure are essential for subsoil deepening, and most of the Brazilian landmass is dominated by much deeper subsoils, reaching depths exceeding 20 m of rotten rocks. To understand the formation of regoliths in the Brazilian landmass, we present all types of tropical alterations classified according to the geochemical processes. The allitization, monosiallitization, bisiallitization, and ferrallitization are defined and exemplified in Brazil, showing their relationship with current and past climatic differences. We highlight Oxisols as the main representatives of weathered and deep saprolite-derived soils. Their chemical, physical, and mineralogical properties reflect prolonged weathering and chemical denudation, and the nature of saprolites has a definite impact on soil constituents, irrespective of bioclimatic conditions. The vast distribution of deep regoliths in the tropical domain is associated with extensive aquifers, mainly under sandy formations of the Paleo-Mesozoic basins. For a broad discussion on the chemical and physical limitations of hostile subsoils in Brazil, we used the framework of the major rocks found in the country and their association with soil-landform and regolith attributes. Finally, we believe that the importance of subsoils and regoliths, their genesis, and environmental implications must be discussed in a broader perspective, incorporating hydrological, pedological, and environmental interplays focused on practical applications of this knowledge. Therefore, we argue that regoliths and subsoils are now recognized as an essential part of the critical zone.},
	language = {en},
	urldate = {2023-03-07},
	booktitle = {Subsoil {Constraints} for {Crop} {Production}},
	publisher = {Springer International Publishing},
	author = {Schaefer, Carlos Ernesto Gonçalves Reynaud and de Souza, José João Lelis Leal and de Oliveira, Fábio Soares and Corrêa, Guilherme Resende and Fernandes Filho, Elpídio Inácio},
	editor = {Oliveira, Teogenes Senna de and Bell, Richard Willian},
	year = {2022},
	doi = {10.1007/978-3-031-00317-2_2},
	keywords = {Critical zone, Subsoil definition, Tropical soils, Tropical weathering},
	pages = {11--52},
}

@article{martin_-_nodate,
	title = {- {THE} {ANCIENT} {STRANDLINES} -},
	language = {en},
	author = {Martin, Louis and Suguio, Kewxtiro},
	file = {Martin and Suguio - - THE ANCIENT STRANDLINES -.pdf:/home/lucasjardim/Zotero/storage/58FZM8YU/Martin and Suguio - - THE ANCIENT STRANDLINES -.pdf:application/pdf},
}

@article{lauriano_geological_2022,
	title = {Geological {Sites} {Supporting} the {Sustainable} {Development} {Goals} of the {UN} 2030 {Agenda}: {A} {Survey} on the {North} {Coast} of {São} {Paulo}, {Brazil}},
	volume = {5},
	issn = {2645-4661},
	shorttitle = {Geological {Sites} {Supporting} the {Sustainable} {Development} {Goals} of the {UN} 2030 {Agenda}},
	url = {https://gcr.isfahan.iau.ir/article_699364.html},
	doi = {10.30486/gcr.2023.1974073.1117},
	abstract = {An essential component for sustaining biodiversity and providing natural resources for society is the management of geodiversity, as represented by the geoheritage of a region, comprising a collection of geosites. In nature conservation planning, the UN 17 Sustainable Development Goals (SDGs) provide an excellent framework for both the private and public sectors. The north coast of the state of São Paulo, Brazil is an area widely used for tourism, with critical problems related to mainly anthropogenic degradation of nature. Forty-three geosites that show important records of regional geology were analyzed for their potential support in achieving the UN 17 SDG and 169 targets. Using Essential Geodiversity Variables (EGVs), our results indicate that, from the 17 SDGs, 13 could benefit directly from actions involving local geodiversity. The relative performance of the geosites in terms of the number of targets for each SDG ranges from 7.7 to 50\%. We show that geodiversity plays a fundamental role in contributing to sustainable development and has great potential to influence public policies. In addition, our work can serve as an inspiration for studies involving ecosystem services and encourage greater participation of the local community in nature conservation actions with the sustainable use of geodiversity.},
	number = {2},
	urldate = {2023-03-07},
	journal = {Geoconservation Research},
	author = {Lauriano, Laíza Maietto and Queiroz, Debora Silva and Garcia, Maria Da Gloria Motta},
	month = nov,
	year = {2022},
	note = {Publisher: Islamic Azad University-Isfahan Branch},
	pages = {335--346},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/BMN9FXEZ/Lauriano et al. - 2022 - Geological Sites Supporting the Sustainable Develo.pdf:application/pdf},
}

@article{garcia_dem-based_2019,
	title = {{DEM}-based geomorphological mapping and landforms characterization of a tropical karst environment in southeastern {Brazil}},
	volume = {93},
	issn = {0895-9811},
	url = {https://www.sciencedirect.com/science/article/pii/S0895981118303560},
	doi = {10.1016/j.jsames.2019.04.013},
	abstract = {This work presents a 1:10,000 geomorphological mapping of an area in southeastern Brazil, based on morphometric analysis of Digital Elevation Models (DEMs), while classical methods focus on photo interpretation. Data derived from the DEM include elevation, slope gradient, slope aspect, vertical and horizontal curvatures, amplitude, elongation and wavelength of landforms. These parameters were used along with slope shape and drainage patterns to classify the landforms according to the Land Systems method, in which portions of the landscape that presents similar terrains attributes are grouped from regional (low detail) to local (high detail) scales, respectively, Land Systems, Land Units and Land Elements. The São Paulo State geomorphological map at 1:1,000,000 scale is considered the best reference source, and was compared with the results obtained in this project. Two Land Systems, four Land Units and twelve Land Elements were identified in the study area. In this area, karst terrains are common and easily identified due their characteristics drainage patterns, amplitude and slope gradient. Karst terrain boundaries defined in this study do overlap with those defined in the state map, however the morphometric analysis allowed a better description of the terrain attributes used to define them. The terrain attributes derived automatically from the DEM enabled an accurate geomorphological classification of the study area. The methodology presented in this paper is considered effective for mapping landforms at a detailed scale and can be employed in regional scale mapping using coarser resolution DEMs.},
	language = {en},
	urldate = {2023-03-07},
	journal = {Journal of South American Earth Sciences},
	author = {Garcia, Guilherme P. B. and Grohmann, Carlos H.},
	month = aug,
	year = {2019},
	keywords = {Geomorphology, Digital Elevation Model, Geomorphometry, Karst, Land systems, Ribeira river},
	pages = {14--22},
	file = {ScienceDirect Snapshot:/home/lucasjardim/Zotero/storage/YCRGLY67/S0895981118303560.html:text/html;Submitted Version:/home/lucasjardim/Zotero/storage/VNZ7LZLM/Garcia and Grohmann - 2019 - DEM-based geomorphological mapping and landforms c.pdf:application/pdf},
}

@article{absaber_fundamentos_2000,
	title = {Fundamentos da {Geomorfologia} {Costeira} do {Brasil} {Inter} e {SubTropical}},
	volume = {1},
	copyright = {Copyright (c)},
	issn = {2236-5664},
	url = {https://rbgeomorfologia.org.br/rbg/article/view/67},
	doi = {10.20502/rbg.v1i1.67},
	abstract = {Palavras chave: litoral tropical; metodologia, costa do Brasil: setores b\ásicos, bibliografia seletiva.},
	language = {pt},
	number = {1},
	urldate = {2023-03-07},
	journal = {Revista Brasileira de Geomorfologia},
	author = {Ab’Sáber, Aziz Nacib},
	month = dec,
	year = {2000},
	note = {Number: 1},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/6N2DFFV4/Ab’Sáber - 2000 - Fundamentos da Geomorfologia Costeira do Brasil In.pdf:application/pdf},
}

@article{castilho_evaluating_2015,
	title = {Evaluating {Landscape} {Connectivity} for {Puma} concolor and {Panthera} onca {Among} {Atlantic} {Forest} {Protected} {Areas}},
	volume = {55},
	issn = {1432-1009},
	url = {https://doi.org/10.1007/s00267-015-0463-7},
	doi = {10.1007/s00267-015-0463-7},
	abstract = {Strictly Protected Areas and riparian forests in Brazil are rarely large enough or connected enough to maintain viable populations of carnivores and animal movement over time, but these characteristics are fundamental for species conservation as they prevent the extinction of isolated animal populations. Therefore, the need to maintain connectivity for these species in human-dominated Atlantic landscapes is critical. In this study, we evaluated the landscape connectivity for large carnivores (cougar and jaguar) among the Strictly Protected Areas in the Atlantic Forest, evaluated the efficiency of the Mosaics of Protected Areas linked to land uses in promoting landscape connectivity, identified the critical habitat connections, and predicted the landscape connectivity status under the implementation of legislation for protecting riparian forests. The method was based on expert opinion translated into land use and land cover maps. The results show that the Protected Areas are still connected by a narrow band of landscape that is permeable to both species and that the Mosaics of Protected Areas increase the amount of protected area but fail to increase the connectivity between the forested mountain ranges (Serra do Mar and Serra da Mantiqueira). Riparian forests greatly increase connectivity, more than tripling the cougars’ priority areas. We note that the selection of Brazilian protected areas still fails to create connectivity among the legally protected forest remnants. We recommend the immediate protection of the priority areas identified that would increase the structural landscape connectivity for these large carnivores, especially paths in the SE/NW direction between the two mountain ranges.},
	language = {en},
	number = {6},
	urldate = {2023-03-30},
	journal = {Environmental Management},
	author = {Castilho, Camila S. and Hackbart, Vivian C. S. and Pivello, Vânia R. and dos Santos, Rozely F.},
	month = jun,
	year = {2015},
	keywords = {Carnivore conservation, Cougars, Environmental planning, Jaguars, Permeability, Riparian Forest},
	pages = {1377--1389},
}

@article{jones_incorporating_2016,
	title = {Incorporating climate change into spatial conservation prioritisation: {A} review},
	volume = {194},
	issn = {0006-3207},
	shorttitle = {Incorporating climate change into spatial conservation prioritisation},
	url = {https://www.sciencedirect.com/science/article/pii/S0006320715301877},
	doi = {10.1016/j.biocon.2015.12.008},
	abstract = {To ensure the long-term persistence of biodiversity, conservation strategies must account for the entire range of climate change impacts. A variety of spatial prioritisation techniques have been developed to incorporate climate change. Here, we provide the first standardised review of these approaches. Using a systematic search, we analysed peer-reviewed spatial prioritisation publications (n=46) and found that the most common approaches (n=41, 89\%) utilised forecasts of species distributions and aimed to either protect future species habitats (n=24, 52\%) or identify climate refugia to shelter species from climate change (n=17, 37\%). Other approaches (n=17, 37\%) used well-established conservation planning principles to combat climate change, aimed at broadly increasing either connectivity (n=11, 24\%) or the degree of heterogeneity of abiotic factors captured in the planning process (n=8, 17\%), with some approaches combining multiple goals. We also find a strong terrestrial focus (n=35, 76\%), and heavy geographical bias towards North America (n=8, 17\%) and Australia (n=11, 24\%). While there is an increasing trend of incorporating climate change into spatial prioritisation, we found that serious gaps in current methodologies still exist. Future research must focus on developing methodologies that allow planners to incorporate human responses to climate change and recognise that discrete climate impacts (e.g. extreme events), which are increasing in frequency and severity, must be addressed within the spatial prioritisation framework. By identifying obvious gaps and highlighting future research needs this review will help practitioners better plan for conservation action in the face of multiple threats including climate change.},
	language = {en},
	urldate = {2023-05-22},
	journal = {Biological Conservation},
	author = {Jones, Kendall R. and Watson, James E. M. and Possingham, Hugh P. and Klein, Carissa J.},
	month = feb,
	year = {2016},
	keywords = {Climate change, Biodiversity conservation, Conservation planning, Direct effects, Extreme events, Human response, Indirect effects, Spatial prioritisation},
	pages = {121--130},
	file = {ScienceDirect Snapshot:/home/lucasjardim/Zotero/storage/2L5EIGHP/S0006320715301877.html:text/html},
}

@article{carrasco_global_2021,
	title = {Global progress in incorporating climate adaptation into land protection for biodiversity since {Aichi} targets},
	volume = {27},
	issn = {1365-2486},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/gcb.15511},
	doi = {10.1111/gcb.15511},
	abstract = {Climate adaptation strategies are being developed and implemented to protect biodiversity from the impacts of climate change. A well-established strategy involves the identification and addition of new areas for conservation, and most countries agreed in 2010 to expand the global protected area (PA) network to 17\% by 2020 (Aichi Biodiversity Target 11). Although great efforts to expand the global PA network have been made, the potential of newly established PAs to conserve biodiversity under future climate change remains unclear at the global scale. Here, we conducted the first global-extent, country-level assessment of the contribution of PA network expansion toward three key land prioritization approaches for biodiversity persistence under climate change: protecting climate refugia, protecting abiotic diversity, and increasing connectivity. These approaches avoid uncertainties of biodiversity predictions under climate change as well as the issue of undescribed species. We found that 51\% of the countries created new PAs in locations with lower mean climate velocity (representing better climate refugia) and 58\% added PAs in areas with higher mean abiotic diversity compared to the available, non-human-dominated lands not chosen for protection. However, connectivity among PAs declined in 53\% of the countries, indicating that many new PAs were located far from existing PAs. Lastly, we identified potential improvements for climate adaptation, showing that 94\% of the countries have the opportunity to improve in executing one or more approaches to conserve biodiversity. Most countries (60\%) were associated with multiple opportunities, highlighting the need for integrative strategies that target multiple land protection approaches. Our results demonstrate that a global improvement in the protection of climate refugia, abiotic diversity, and connectivity of reserves is needed to complement land protection informed by existing and projected species distributions. Our study also provides a framework for countries to prioritize land protection for climate adaptation using publicly available data.},
	language = {en},
	number = {9},
	urldate = {2023-05-22},
	journal = {Global Change Biology},
	author = {Carrasco, Luis and Papeş, Monica and Sheldon, Kimberly S. and Giam, Xingli},
	year = {2021},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15511},
	keywords = {climate change, connectivity, protected areas, abiotic diversity, climate refugia, climate velocity},
	pages = {1788--1801},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/DT3VAG9B/gcb.html:text/html},
}

@article{anderson_conserving_2010,
	title = {Conserving the {Stage}: {Climate} {Change} and the {Geophysical} {Underpinnings} of {Species} {Diversity}},
	volume = {5},
	issn = {1932-6203},
	shorttitle = {Conserving the {Stage}},
	url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0011554},
	doi = {10.1371/journal.pone.0011554},
	abstract = {Conservationists have proposed methods for adapting to climate change that assume species distributions are primarily explained by climate variables. The key idea is to use the understanding of species-climate relationships to map corridors and to identify regions of faunal stability or high species turnover. An alternative approach is to adopt an evolutionary timescale and ask ultimately what factors control total diversity, so that over the long run the major drivers of total species richness can be protected. Within a single climatic region, the temperate area encompassing all of the Northeastern U.S. and Maritime Canada, we hypothesized that geologic factors may take precedence over climate in explaining diversity patterns. If geophysical diversity does drive regional diversity, then conserving geophysical settings may offer an approach to conservation that protects diversity under both current and future climates. Here we tested how well geology predicts the species diversity of 14 US states and three Canadian provinces, using a comprehensive new spatial dataset. Results of linear regressions of species diversity on all possible combinations of 23 geophysical and climatic variables indicated that four geophysical factors; the number of geological classes, latitude, elevation range and the amount of calcareous bedrock, predicted species diversity with certainty (adj. R2 = 0.94). To confirm the species-geology relationships we ran an independent test using 18,700 location points for 885 rare species and found that 40\% of the species were restricted to a single geology. Moreover, each geology class supported 5–95 endemic species and chi-square tests confirmed that calcareous bedrock and extreme elevations had significantly more rare species than expected by chance (P{\textless}0.0001), strongly corroborating the regression model. Our results suggest that protecting geophysical settings will conserve the stage for current and future biodiversity and may be a robust alternative to species-level predictions.},
	language = {en},
	number = {7},
	urldate = {2023-05-22},
	journal = {PLOS ONE},
	author = {Anderson, Mark G. and Ferree, Charles E.},
	month = jul,
	year = {2010},
	note = {Publisher: Public Library of Science},
	keywords = {Climate change, Conservation science, Geology, Geophysics, Latitude, Limestone, Sedimentary geology, Species diversity},
	pages = {e11554},
	file = {Anderson_Ferree_2010_Conserving the Stage.pdf:/home/lucasjardim/Zotero/storage/Z6XE4ERN/Anderson_Ferree_2010_Conserving the Stage.pdf:application/pdf},
}

@article{bauder_incorporating_2022,
	title = {Incorporating habitat suitability, landscape distance, and resistant kernels to estimate conservation units for an imperiled terrestrial snake},
	volume = {37},
	issn = {1572-9761},
	url = {https://doi.org/10.1007/s10980-022-01510-z},
	doi = {10.1007/s10980-022-01510-z},
	abstract = {Wildlife distributions are often subdivided into discrete conservation units to aid in implementing management and conservation objectives. Habitat suitability models, resistance surfaces, and resistant kernels provide tools for delineating spatially explicit conservation units but guidelines for parameterizing resistant kernels are generally lacking.},
	language = {en},
	number = {10},
	urldate = {2023-04-11},
	journal = {Landscape Ecology},
	author = {Bauder, Javan M. and Chandler, Houston C. and Elmore, Michele L. and Jenkins, Christopher L.},
	month = oct,
	year = {2022},
	keywords = {Connectivity modeling, Conservation units, Drymarchon couperi, Eastern indigo snake, Model calibration, Pattern-oriented modeling, Resistance surface, Resistant kernel},
	pages = {2519--2533},
}

@article{kumar_connectivity_2022,
	title = {Connectivity modelling in conservation science: a comparative evaluation},
	volume = {12},
	copyright = {2022 The Author(s)},
	issn = {2045-2322},
	shorttitle = {Connectivity modelling in conservation science},
	url = {https://www.nature.com/articles/s41598-022-20370-w},
	doi = {10.1038/s41598-022-20370-w},
	abstract = {Landscape connectivity, the extent to which a landscape facilitates the flow of ecological processes such as organism movement, has grown to become a central focus of applied ecology and conservation science. Several computational algorithms have been developed to understand and map connectivity, and many studies have validated their predictions using empirical data. Yet at present, there is no published comparative analysis which uses a comprehensive simulation framework to measure the accuracy and performance of the dominant methods in connectivity modelling. Given the widespread usage of such models in spatial ecology and conservation science, a thorough evaluation of their predictive abilities using simulation techniques is essential for guiding their appropriate and effective application across different contexts. In this paper, we address this by using the individual-based movement model Pathwalker to simulate different connectivity scenarios generated from a wide range of possible movement behaviours and spatial complexities. With this simulated data, we test the predictive abilities of three major connectivity models: factorial least-cost paths, resistant kernels, and Circuitscape. Our study shows the latter two of these three models to consistently perform most accurately in nearly all cases, with their abilities varying substantially in different contexts. For the majority of conservation applications, we infer resistant kernels to be the most appropriate model, except for when the movement is strongly directed towards a known location. We conclude this paper with a review and interdisciplinary discussion of the current limitations and possible future developments of connectivity modelling.},
	language = {en},
	number = {1},
	urldate = {2023-04-10},
	journal = {Scientific Reports},
	author = {Kumar, Siddharth Unnithan and Cushman, Samuel A.},
	month = oct,
	year = {2022},
	note = {Number: 1
Publisher: Nature Publishing Group},
	keywords = {Conservation biology, Ecological modelling},
	pages = {16680},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/E54MGAP5/Unnithan Kumar and Cushman - 2022 - Connectivity modelling in conservation science a .pdf:application/pdf},
}


@article{hayes_amazon_2004,
	title = {The {Amazon} {River} as a dispersal barrier to passerine birds: effects of river width, habitat and taxonomy},
	volume = {31},
	issn = {0305-0270, 1365-2699},
	shorttitle = {The {Amazon} {River} as a dispersal barrier to passerine birds},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1365-2699.2004.01139.x},
	doi = {10.1111/j.1365-2699.2004.01139.x},
	language = {en},
	number = {11},
	urldate = {2024-03-01},
	journal = {Journal of Biogeography},
	author = {Hayes, Floyd E. and Sewlal, Jo‐Anne N.},
	month = nov,
	year = {2004},
	pages = {1809--1818},
}


@article{guerra_drivers_2020,
	title = {Drivers and projections of vegetation loss in the {Pantanal} and surrounding ecosystems},
	volume = {91},
	issn = {02648377},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0264837719315595},
	doi = {10.1016/j.landusepol.2019.104388},
	language = {en},
	urldate = {2024-03-01},
	journal = {Land Use Policy},
	author = {Guerra, Angélica and Roque, Fabio De Oliveira and Garcia, Letícia Couto and Ochoa-Quintero, José Manuel and Oliveira, Paulo Tarso Sanches De and Guariento, Rafael Dettogni and Rosa, Isabel M.D.},
	month = feb,
	year = {2020},
	pages = {104388},
}


@article{yamazaki_development_2014,
	title = {Development of the {Global} {Width} {Database} for {Large} {Rivers}},
	volume = {50},
	issn = {0043-1397, 1944-7973},
	url = {https://agupubs.onlinelibrary.wiley.com/doi/10.1002/2013WR014664},
	doi = {10.1002/2013WR014664},
	abstract = {Abstract
            River width is a fundamental parameter of river hydrodynamic simulations, but no global‐scale river width database based on observed water bodies has yet been developed. Here we present a new algorithm that automatically calculates river width from satellite‐based water masks and flow direction maps. The Global Width Database for Large Rivers (GWD‐LR) is developed by applying the algorithm to the SRTM Water Body Database and the HydroSHEDS flow direction map. Both bank‐to‐bank river width and effective river width excluding islands are calculated for river channels between 60S and 60N. The effective river width of GWD‐LR is compared with existing river width databases for the Congo and Mississippi Rivers. The effective river width of the GWD‐LR is slightly narrower compared to the existing databases, but the relative difference is within ±20\% for most river channels. As the river width of the GWD‐LR is calculated along the river channels of the HydroSHEDS flow direction map, it is relatively straightforward to apply the GWD‐LR to global and continental‐scale river modeling.
          , 
            Key Points
            
              
                
                  Global Width Database for Large Rivers (GWD‐LR) based on satellite water mask
                
                
                  River width of GWD‐LR is calculated along the HydroSHEDS flow direction map
                
                
                  GWD‐LR shows good consistency to existing basin‐scale river width data sets},
	language = {en},
	number = {4},
	urldate = {2024-03-01},
	journal = {Water Resources Research},
	author = {Yamazaki, Dai and O'Loughlin, Fiachra and Trigg, Mark A. and Miller, Zachary F. and Pavelsky, Tamlin M. and Bates, Paul D.},
	month = apr,
	year = {2014},
	pages = {3467--3480},
	file = {Full Text:/home/lucasjardim/Zotero/storage/GG4H9UP6/Yamazaki et al. - 2014 - Development of the Global Width Database for Large.pdf:application/pdf},
}

@article{lehner_global_2013,
	title = {Global river hydrography and network routing: baseline data and new approaches to study the world's large river systems},
	volume = {27},
	issn = {0885-6087, 1099-1085},
	shorttitle = {Global river hydrography and network routing},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/hyp.9740},
	doi = {10.1002/hyp.9740},
	abstract = {Abstract
            Despite significant recent advancements, global hydrological models and their input databases still show limited capabilities in supporting many spatially detailed research questions and integrated assessments, such as required in freshwater ecology or applied water resources management. In order to address these challenges, the scientific community needs to create improved large‐scale datasets and more flexible data structures that enable the integration of information across and within spatial scales; develop new and advanced models that support the assessment of longitudinal and lateral hydrological connectivity; and provide an accessible modeling environment for researchers, decision makers, and practitioners. As a contribution, we here present a new modeling framework that integrates hydrographic baseline data at a global scale (enhanced HydroSHEDS layers and coupled datasets) with new modeling tools, specifically a river network routing model (HydroROUT) that is currently under development. The resulting ‘hydro‐spatial fabric’ is designed to provide an avenue for advanced hydro‐ecological applications at large scales in a consistent and highly versatile way. Preliminary results from case studies to assess human impacts on water quality and the effects of dams on river fragmentation and downstream flow regulation illustrate the potential of this combined data‐and‐modeling framework to conduct novel research in the fields of aquatic ecology, biogeochemistry, geo‐statistical modeling, or pollution and health risk assessments. The global scale outcomes are at a previously unachieved spatial resolution of 500 m and can thus support local planning and decision making in many of the world's large river basins. Copyright © 2013 John Wiley \& Sons, Ltd.},
	language = {en},
	number = {15},
	urldate = {2024-03-01},
	journal = {Hydrological Processes},
	author = {Lehner, Bernhard and Grill, Günther},
	month = jul,
	year = {2013},
	pages = {2171--2186},
}

@article{theobald_ecologically-relevant_2015,
	title = {Ecologically-{Relevant} {Maps} of {Landforms} and {Physiographic} {Diversity} for {Climate} {Adaptation} {Planning}},
	volume = {10},
	issn = {1932-6203},
	url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143619},
	doi = {10.1371/journal.pone.0143619},
	abstract = {Key to understanding the implications of climate and land use change on biodiversity and natural resources is to incorporate the physiographic platform on which changes in ecological systems unfold. Here, we advance a detailed classification and high-resolution map of physiography, built by combining landforms and lithology (soil parent material) at multiple spatial scales. We used only relatively static abiotic variables (i.e., excluded climatic and biotic factors) to prevent confounding current ecological patterns and processes with enduring landscape features, and to make the physiographic classification more interpretable for climate adaptation planning. We generated novel spatial databases for 15 landform and 269 physiographic types across the conterminous United States of America. We examined their potential use by natural resource managers by placing them within a contemporary climate change adaptation framework, and found our physiographic databases could play key roles in four of seven general adaptation strategies. We also calculated correlations with common empirical measures of biodiversity to examine the degree to which the physiographic setting explains various aspects of current biodiversity patterns. Additionally, we evaluated the relationship between landform diversity and measures of climate change to explore how changes may unfold across a geophysical template. We found landform types are particularly sensitive to spatial scale, and so we recommend using high-resolution datasets when possible, as well as generating metrics using multiple neighborhood sizes to both minimize and characterize potential unknown biases. We illustrate how our work can inform current strategies for climate change adaptation. The analytical framework and classification of landforms and parent material are easily extendable to other geographies and may be used to promote climate change adaptation in other settings.},
	language = {en},
	number = {12},
	urldate = {2022-12-13},
	journal = {PLOS ONE},
	author = {Theobald, David M. and Harrison-Atlas, Dylan and Monahan, William B. and Albano, Christine M.},
	year = {2015},
	note = {Publisher: Public Library of Science},
	keywords = {Climate change, Conservation science, Species diversity, Biodiversity, Cliffs, Landforms, Physical geography, Valleys},
	pages = {e0143619},
	file = {Theobald et al_2015_Ecologically-Relevant Maps of Landforms and Physiographic Diversity for Climate.pdf:/home/lucasjardim/Zotero/storage/AUUVDD4I/Theobald et al_2015_Ecologically-Relevant Maps of Landforms and Physiographic Diversity for Climate.pdf:application/pdf},
}

@misc{tnc_brasil_mapeamento_2022,
	title = {Mapeamento de áreas resilientes a mudanças climáticas nos biomas brasileiros},
	author = {TNC Brasil, The Nature Conservancy Brasil},
	year = {2022},
	file = {TNC Brasil - 2022 - Mapeamento de áreas resilientes a mudanças climáti.pdf:/home/lucasjardim/Zotero/storage/JRVD7I7G/TNC Brasil - 2022 - Mapeamento de áreas resilientes a mudanças climáti.pdf:application/pdf},
}

@article{iwahashi_global_2022,
	title = {Global polygons for terrain classification divided into uniform slopes and basins},
	volume = {9},
	issn = {2197-4284},
	url = {https://progearthplanetsci.springeropen.com/articles/10.1186/s40645-022-00487-2},
	doi = {10.1186/s40645-022-00487-2},
	abstract = {Global terrain classification data have been used for various issues related to topography such as the estimation of soil types and of ground vulnerability to earthquakes and the creation of seismic hazard maps. However, due to the resolution of digital elevation models (DEMs), the terrain classification data from previous studies could not discriminate small landforms such as plains at the bottom of narrow valleys and small rises in plains. Owing to the greater regional variation of small landforms, there is trade-off between DEMs of higher resolution and the creation of global geomorphological legends. To address this problem, we first merged regions with similar topographic characteristics using slope gradients and HAND (height above the nearest drainage) calculated by the 90-m-spatial-resolution DEMs interpolated from the multi-error-removed improved-terrain DEM (MERIT DEM), and united the polygons with the unit catchments of the MERIT-Basins dataset, so that the polygons contain calculated terrain measurements (slope gradient, HAND, surface texture, local convexity, sinks) and noise types as attributes, as well as the ID number of the unit catchment. In addition, we performed k-means clustering on the dataset using slope gradient, HAND, and surface texture, which can be combined with the dataset as a simple terrain classification. The clustering results were prepared in 15 and 40 global uniform clusters and 15 and 40 clusters for each basin to understand the global appearance of the terrain and provide zoning data for regional problem-solving. The 15 clusters were prepared to observe the outline of the terrain without any processing, whereas the 40 clusters were prepared to group and reclassify the polygons to create zoning data for each region. This dataset showed improvements in terms of capturing the small rises in plains compared to the authors’ previous global terrain classification data. This dataset can be used as a proxy and is expected to contribute to modeling and estimation in various applications that are known to be related to topography. The datasets of this article are available at [https://gisstar.gsi.go.jp/terrain2021/].},
	language = {en},
	number = {1},
	urldate = {2022-12-16},
	journal = {Progress in Earth and Planetary Science},
	author = {Iwahashi, Junko and Yamazaki, Dai},
	month = dec,
	year = {2022},
	pages = {33},
	file = {Iwahashi y Yamazaki - 2022 - Global polygons for terrain classification divided.pdf:/home/lucasjardim/Zotero/storage/ZU6PNDQJ/Iwahashi y Yamazaki - 2022 - Global polygons for terrain classification divided.pdf:application/pdf},
}

@article{anderson_resilient_nodate,
	title = {Resilient {Coastal} {Sites} for {Conservation} in the {Northeast} and {Mid}-{Atlantic} {US}},
	language = {en},
	author = {Anderson, Mark G and Barnett, Analie},
	file = {Anderson y Barnett - Resilient Coastal Sites for Conservation in the No.pdf:/home/lucasjardim/Zotero/storage/FUQ4NK5W/Anderson y Barnett - Resilient Coastal Sites for Conservation in the No.pdf:application/pdf},
}

@misc{rosenfield_identificando_2021,
	title = {Identificando sítios resilientes a mudanças climáticas - {Síntese} do estudo},
	author = {Rosenfield, Milena F.},
	year = {2021},
	annote = {Anotaciones(8/12/2022 12:59:23)
"mapear áreas resilientes a mudanças climáticas e conectadas entre si, identificando locais que seriam mais adequados a persistir e se adaptar a mudanças no clima." (Rosenfield, 2021, p. 1)"áreas com potencial de sustentar animais e plantas em um clima sob mudanças" (Rosenfield, 2021, p. 1)"diversidade de ambientes em uma região." (Rosenfield, 2021, p. 1)"propriedades do terreno." (Rosenfield, 2021, p. 1)"persistam" (Rosenfield, 2021, p. 1)"alta diversidade microclimática, grau de conservação e conectividade." (Rosenfield, 2021, p. 1)"um mapa interativo que identifica a localização dos sítios resilientes (Resilient Land Mapping Tool)" (Rosenfield, 2021, p. 1)"(1) a diversidade de espécies é correlacionada com a diversidade geofísica; (2) em um cenário de mudança climática, espécies se beneficiam de microclimas locais para se manter na paisagem; e (3) populações de espécies podem usar microclimas e se adaptar às mudanças se a área for permeável e bem conectada." (Rosenfield, 2021, p. 1)"locais" (Rosenfield, 2021, p. 1)"ropriedades físicas q" (Rosenfield, 2021, p. 1)"diversidade da paisagem, baseada nas características físicas do terreno (ex. inclinação, orientação, land position index, umidade e presença de áreas úmidas, gerando mapa de landforms); e conectividade local, baseada n" (Rosenfield, 2021, p. 1)"s valores de resistência da paisagem (uso antrópico do solo, como infraestrutura e agricultura)." (Rosenfield, 2021, p. 1)"Tipos de paisagem" (Rosenfield, 2021, p. 1)"similares" (Rosenfield, 2021, p. 1)"comunidades naturais distintas." (Rosenfield, 2021, p. 1)"mesmo que as espécies no futuro sejam diferentes das atuais" (Rosenfield, 2021, p. 2)"geologia, solo e altitude." (Rosenfield, 2021, p. 2)"atualmente" (Rosenfield, 2021, p. 2)"refúgio" (Rosenfield, 2021, p. 2)"stimativa da capacidade do local de manter a diversidade de espécies e funcionamento ecológico sob mudanças do clima." (Rosenfield, 2021, p. 2)"avaliação" (Rosenfield, 2021, p. 2)"quantificação" (Rosenfield, 2021, p. 2)"aracterísticas físicas que promovem a resiliência" (Rosenfield, 2021, p. 2)"diversidade" (Rosenfield, 2021, p. 2)"paisagem" (Rosenfield, 2021, p. 2)"conectividade local" (Rosenfield, 2021, p. 2)"alta diversidade microclimática" (Rosenfield, 2021, p. 2)"lteração antrópic" (Rosenfield, 2021, p. 2)"disponibilidade de microhabitats e gradientes climáticos nos vizinhos imediatos circulando qualquer célula de terreno de 30 m." (Rosenfield, 2021, p. 2)"contagem da variedade de landforms em pequenas escalas, pela medição da amplitude altitudinal, e pela avaliação da densidade e configuração de áreas úmidas (banhados) em um buffer de 40 ha no entorno de cada ponto da paisagem" (Rosenfield, 2021, p. 2)"grau de fragmentação e força das barreiras" (Rosenfield, 2021, p. 2)"quantidade e configuração de barreiras antrópicas, tais como estradas, centros urbanos, infraestrutura de energia, agricultura e silvicultura." (Rosenfield, 2021, p. 2)"Anderson et al. 20147 e refinada posteriormente nos relatórios técnicos publicados em 2016)" (Rosenfield, 2021, p. 2)"caracterizar e classificar a região de estudo em configurações geofísicas baseadas nas suas propriedades físicas, tais como geologia, solo e altitude, que correspondem às diferenças na fauna e flora associadas." (Rosenfield, 2021, p. 2)"ecoregiões" (Rosenfield, 2021, p. 2)"landforms" (Rosenfield, 2021, p. 2)"conjuntos de comunidades naturais e espécies" (Rosenfield, 2021, p. 2)"ona altitudinal e da classe geológica" (Rosenfield, 2021, p. 2)"diversidade da paisagem e a conectividade local para cada célula de 30 m" (Rosenfield, 2021, p. 3)"variedade de microclimas" (Rosenfield, 2021, p. 3)"baseada em um modelo de landforms (derivado de um DEM com resolução de 30 m)," (Rosenfield, 2021, p. 3)"andforms (como por exemplo, cliff and steep slope, summit and ridge-top, northeast facing side slope, low hill, dry fat," (Rosenfield, 2021, p. 3)"inclinação, orientação, posição no terreno e acumulação de umidade (slope, aspect, land position and moisture accumulation)," (Rosenfield, 2021, p. 3)"ambientes topográficos locais com combinações distintas de umidade, radiação e deposição." (Rosenfield, 2021, p. 3)"número de landforms dentro de uma área circular de 40 ha no entorno de cada célula de 30 m," (Rosenfield, 2021, p. 3)"DEM," (Rosenfield, 2021, p. 3)"componente não correlacionado com o componente de landforms." (Rosenfield, 2021, p. 3)"não permitem discriminar de forma correta células equivalentes, foram avaliadas a densidade de áreas úmidas/banhados e a diversidade de solos." (Rosenfield, 2021, p. 3)"características microtopográficas não capturadas nas classes do modelo de landforms." (Rosenfield, 2021, p. 3)"cálculo do valor de banhados envolve ainda a avaliação de manchas irregulares de áreas úmidas (wetland patchiness)" (Rosenfield, 2021, p. 3)"distribuição irregular de áreas úmidas de tamanho reduzido." (Rosenfield, 2021, p. 3)"em escala mais fina para identificar variações em áreas planas de alta diversidade nas características do solo" (Rosenfield, 2021, p. 3)"landforms, amplitude altitudinal, valor de banhado e diversidade de solos descritos acima gera o índice de diversidade da paisagem." (Rosenfield, 2021, p. 3)"grau de permeabilidade (ou reciprocamente o grau de resistência) em torno de cada célula avaliada." (Rosenfield, 2021, p. 4)"O pressuposto é de que a permeabilidade de duas células adjacentes aumenta quando a sua similaridade ecológica aumenta." (Rosenfield, 2021, p. 4)"simplificação dos tipos de uso em componentes principais da paisagem" (Rosenfield, 2021, p. 4)"resistência para cada categoria, nos quais áreas naturais apresentam o valor mínimo, e áreas com intervenção antrópica intensa, o valor máximo." (Rosenfield, 2021, p. 4)"áreas naturais (florestas, banhados, campos), áreas agrícolas ou modificadas (incluindo áreas improdutivas não-naturais) e áreas urbanizadas (de baixa ou alta intensidade)" (Rosenfield, 2021, p. 4)"dispersão teórica de uma espécie (ou processo) a partir de uma célula focal é uma função dos valores de resistência das células vizinhas e suas distâncias com relação à célula focal, até uma distância máxima de 3 km." (Rosenfield, 2021, p. 4)"resistência dividida pela área de dispersão teórica se não houvesse resistência." (Rosenfield, 2021, p. 4)"diversidade da paisagem e conectividade local:" (Rosenfield, 2021, p. 4)"dados padronizados (z-scores)." (Rosenfield, 2021, p. 4)"configurações geofísicas (item 3.1) dentro de ecoregiõe" (Rosenfield, 2021, p. 4)"inclusão de condições físicas e ambientais distintas e permite capturar variações na composição da biota associad" (Rosenfield, 2021, p. 4)"a resiliência é comparada dentro de cada configuração e não entre configurações geofísicas." (Rosenfield, 2021, p. 4)"comparados ao valor médio da região avaliada" (Rosenfield, 2021, p. 4)"locais com maiores níveis de biodiversidade (Anderson et al. 2014)" (Rosenfield, 2021, p. 4)
},
	file = {Rosenfield - 2021 - Identificando sítios resilientes a mudanças climát.pdf:/home/lucasjardim/Zotero/storage/W5WYKKLN/Rosenfield - 2021 - Identificando sítios resilientes a mudanças climát.pdf:application/pdf},
}

@article{winiarski_evaluation_2020,
	title = {Evaluation of the {R} package ‘resistancega’: {A} promising approach towards the accurate optimization of landscape resistance surfaces},
	volume = {20},
	issn = {1755-0998},
	shorttitle = {Evaluation of the {R} package ‘resistancega’},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/1755-0998.13217},
	doi = {10.1111/1755-0998.13217},
	abstract = {Understanding how landscape features affect gene flow has implications for numerous fields including molecular and evolutionary ecology. Despite this, modelling landscape resistance surfaces has remained a significant challenge. The R package resistancega was developed to provide a framework for optimizing landscape resistance surfaces. In this study, we assessed ResistanceGA's ability to recover the true resistance surface under a variety of scenarios, including when the underlying surface: (a) had different levels of spatial autocorrelation and (b) was transformed into a resistance surface using different functional transformations. These scenarios were evaluated with regard to varying sample size and varying levels of variance in the measure of genetic distance. We also assessed the ability of ResistanceGA to identify the true resistance surface among alternative correlated surfaces. In univariate simulations, correlation between the true and optimized resistance surfaces remained high with increased variance in genetic distance, but only when sample size was moderate to high (≥50). Model selection error was also driven by sample size with low type I error when simulations had moderate to high sample sizes, even with moderate to high variance in genetic distance and correlated alternative surfaces. ResistanceGA also performed well in multivariate simulationsbut had more difficulty identifying the true data generating surfaces when genetic data were simulated using an agent-based approach (especially with individual-based genetic data). Overall, our simulations highlight the ability of ResistanceGA to accurately optimize resistance surfaces but also underscore challenges in optimizing landscape resistance surfaces, especially with highly stochastic individual-based data.},
	language = {en},
	number = {6},
	urldate = {2023-03-07},
	journal = {Molecular Ecology Resources},
	author = {Winiarski, Kristopher Jonathan and Peterman, William E. and McGarigal, Kevin},
	year = {2020},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/1755-0998.13217},
	keywords = {landscape genetics, gene flow, genetic algorithm, resistance distance, resistance optimization, circuitscape, resistancega},
	pages = {1583--1596},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/5A78FPTY/1755-0998.html:text/html},
}

@article{littlefield_connecting_2017,
	title = {Connecting today's climates to future climate analogs to facilitate movement of species under climate change},
	volume = {31},
	issn = {1523-1739},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/cobi.12938},
	doi = {10.1111/cobi.12938},
	abstract = {Increasing connectivity is an important strategy for facilitating species range shifts and maintaining biodiversity in the face of climate change. To date, however, few researchers have included future climate projections in efforts to prioritize areas for increasing connectivity. We identified key areas likely to facilitate climate-induced species’ movement across western North America. Using historical climate data sets and future climate projections, we mapped potential species’ movement routes that link current climate conditions to analogous climate conditions in the future (i.e., future climate analogs) with a novel moving-window analysis based on electrical circuit theory. In addition to tracing shifting climates, the approach accounted for landscape permeability and empirically derived species’ dispersal capabilities. We compared connectivity maps generated with our climate-change-informed approach with maps of connectivity based solely on the degree of human modification of the landscape. Including future climate projections in connectivity models substantially shifted and constrained priority areas for movement to a smaller proportion of the landscape than when climate projections were not considered. Potential movement, measured as current flow, decreased in all ecoregions when climate projections were included, particularly when dispersal was limited, which made climate analogs inaccessible. Many areas emerged as important for connectivity only when climate change was modeled in 2 time steps rather than in a single time step. Our results illustrate that movement routes needed to track changing climatic conditions may differ from those that connect present-day landscapes. Incorporating future climate projections into connectivity modeling is an important step toward facilitating successful species movement and population persistence in a changing climate.},
	language = {en},
	number = {6},
	urldate = {2023-03-08},
	journal = {Conservation Biology},
	author = {Littlefield, Caitlin E. and McRae, Brad H. and Michalak, Julia L. and Lawler, Joshua J. and Carroll, Carlos},
	year = {2017},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/cobi.12938},
	keywords = {conectividad, connectivity, dispersal, dispersión, adaptación al cambio climático, análogos climáticos, climate analogs, climate-change adaptation},
	pages = {1397--1408},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/JE6M679U/cobi.html:text/html},
}

@article{compton_resistantkernel_2007,
	title = {A {Resistant}‐{Kernel} {Model} of {Connectivity} for {Amphibians} that {Breed} in {Vernal} {Pools}},
	volume = {21},
	issn = {0888-8892, 1523-1739},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1523-1739.2007.00674.x},
	doi = {10.1111/j.1523-1739.2007.00674.x},
	abstract = {Pool-breeding amphibian populations operate at multiple scales, from the individual pool to surrounding upland habitat to clusters of pools. When metapopulation dynamics play a role in long-term viability, conservation efforts limited to the protection of individual pools or even pools with associated upland habitat may be ineffective over the long term if connectivity among pools is not maintained. Connectivity becomes especially important and difficult to assess in regions where suburban sprawl is rapidly increasing land development, road density, and traffic rates. We developed a model of connectivity among vernal pools for the four ambystomatid salamanders that occur in Massachusetts and applied it to the nearly 30,000 potential ephemeral wetlands across the state. The model was based on a modification of the kernel estimator (a density estimator commonly used in home range studies) that takes landscape resistance into account. The model was parameterized with empirical migration distances for spotted salamanders (Ambystoma maculatum), dispersal distances for marbled salamanders (A. opacum), and expert-derived estimates of landscape resistance. The model ranked vernal pools in Massachusetts by local, neighborhood, and regional connectivity and by an integrated measure of connectivity, both statewide and within ecoregions. The most functionally connected pool complexes occurred in southeastern and northeastern Massachusetts, areas with rapidly increasing suburban development. In a sensitivity analysis estimates of pool connectivity were relatively insensitive to uncertainty in parameter estimates, especially at the local and neighborhood scales. Our connectivity model could be used to prioritize conservation efforts for vernal-pool amphibian populations at broader scales than traditional pool-based approaches.},
	language = {en},
	number = {3},
	urldate = {2022-12-07},
	journal = {Conservation Biology},
	author = {Compton, Bradley W. and McGARIGAL, Kevin and Cushman, Samuel A. and Gamble, Lloyd R.},
	month = jun,
	year = {2007},
	pages = {788--799},
	file = {Compton et al 2007 Resistant-Kernel model.pdf:/home/lucasjardim/Zotero/storage/9VE3XENM/Compton et al 2007 Resistant-Kernel model.pdf:application/pdf;Compton et al. - 2007 - A Resistant‐Kernel Model of Connectivity for Amphi.pdf:/home/lucasjardim/Zotero/storage/K48IXT9U/Compton et al. - 2007 - A Resistant‐Kernel Model of Connectivity for Amphi.pdf:application/pdf},
}

@article{pie_phylogenomics_2018,
	title = {Phylogenomics of montane frogs of the {Brazilian} {Atlantic} {Forest} is consistent with isolation in sky islands followed by climatic stability},
	volume = {125},
	issn = {0024-4066},
	url = {https://doi.org/10.1093/biolinnean/bly093},
	doi = {10.1093/biolinnean/bly093},
	abstract = {Despite encompassing a relatively small geographical area, montane regions harbour disproportionately high levels of species diversity and endemism. Nonetheless, relatively little is known about the evolutionary mechanisms that ultimately lead to montane diversity. In this study, we used target capture of ultraconserved elements to investigate the phylogenetic relationships and diversification patterns of Melanophryniscus (Bufonidae) and Brachycephalus (Brachycephalidae), two frog genera that occur in sky islands of the southern Atlantic Forest of Brazil. Specifically, we tested whether diversification of montane species in these genera could be explained by a single climatic shift leading to isolation in sky islands, followed by climatic stability that maintained populations in allopatry. In both genera, the topologies inferred using concatenation and coalescent-based methods were concordant and had strong nodal support, except for a few recent splits, which nevertheless tended to be supported by more informative loci. Estimation of divergence time of a combined dataset using both genera is consistent with a concordant timing of their diversification. These results support the scenario of diversification by isolation in sky islands and suggest that allopatry attributable to climatic gradients in montane regions is an important mechanism for generating species diversity and endemism in these regions.},
	number = {1},
	urldate = {2023-03-07},
	journal = {Biological Journal of the Linnean Society},
	author = {Pie, Marcio R and Faircloth, Brant C and Ribeiro, Luiz F and Bornschein, Marcos R and Mccormack, John E},
	month = aug,
	year = {2018},
	pages = {72--82},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/R5N6EVD8/Pie et al. - 2018 - Phylogenomics of montane frogs of the Brazilian At.pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/HNBCYYAF/5054334.html:text/html},
}

@article{tavora_approach_2016,
	title = {An approach to map landscape functions in {Atlantic} {Forest}—{Brazil}},
	volume = {71},
	issn = {1470-160X},
	url = {https://www.sciencedirect.com/science/article/pii/S1470160X16303971},
	doi = {10.1016/j.ecolind.2016.07.005},
	abstract = {Assessing the landscape as a whole is an important step towards the understanding the landscape’s functionality and, consequently, identifying areas with different levels of ecosystem functions (EF)/landscape functions (LF) and services (ES). The main aim of this paper is present a framework to map LF considering the landscape approach. Our study case was a watershed located in the mountain region of Rio de Janeiro state. To achieve the goal, we defined landscape units and ecosystem functions. Based on it, a correlation matrix was produced and sent to experts for consultation. Then, we map the potential of landscape units to provide EF. The result showed that, of 23 landscape units, six units had relevance for habitat, information and regulation functions; five showed potential to perform production and regulation functions, one unit showed potential to perform habitat maintenance and information functions. Seven units showed relevance for only one function category. This study highlights how multifunctional a landscape can be. It was evident that different landscape components are able to provide a wild range of EF. Moreover, this represent a high capacity to propose sustainable alternatives for landscapes—knowing the landscape unit potential to provide LF it is possible to indicate the best options for its use and potentialize the LF provision. It was evident that well managed landscapes are also capable to provide LF.},
	language = {en},
	urldate = {2023-03-07},
	journal = {Ecological Indicators},
	author = {Távora, Gabriel S. G. and Turetta, Ana Paula D.},
	month = dec,
	year = {2016},
	keywords = {Agricultural landscape, Ecosystem functions, Ecosystem services, Landscape units, Watershed},
	pages = {557--566},
}

@article{thome_phylogeography_2010,
	title = {Phylogeography of endemic toads and post-{Pliocene} persistence of the {Brazilian} {Atlantic} {Forest}},
	volume = {55},
	issn = {1055-7903},
	url = {https://www.sciencedirect.com/science/article/pii/S1055790310000539},
	doi = {10.1016/j.ympev.2010.02.003},
	abstract = {The Plio–Pleistocene refugia hypothesis recently gained support in explaining Brazilian Atlantic Forest megadiversity from combined analyses of species paleodistributions and genetic diversity. Here we examine genetic differentiation and historical distributions in the Rhinella crucifer group of toads, endemic to and widely distributed within this biome. We analyzed sequences of mitochondrial (control region, ND1, and ND2) and nuclear (β-crystallin and rhodopsin) DNA markers from 65 individuals representing five species. We found deep structure across the range at mitochondrial markers; genetic diversity is geographically structured in four main haplotype clades with the oldest divergence, dated to the Pliocene, between the southernmost populations and other regions of the species’ range. Remaining populations are distributed in haplotype clades that may have diverged throughout the Pleistocene. Our paleoecological distribution models support a scenario of habitat fragmentation associated with glacial cycling, but we found limited congruence of phylogeographic patterns with the refugia. We found that some genetic breaks geographically coincide with putative barriers associated to neotectonic activity, but finer-scale sampling will be necessary to test the relative importance of distinct isolation mechanisms. Overall, the data refute the recently proposed hypothesis of a southern Holocene colonization of the Atlantic Forest from northern refugia, suggesting instead persistence of forested habitats in the south. Our unexpected results underscore the need to consider distinct organismal histories in planning biome-level conservation. We discuss species correspondence to clades recovered in our phylogenetic analyses.},
	language = {en},
	number = {3},
	urldate = {2023-03-07},
	journal = {Molecular Phylogenetics and Evolution},
	author = {Thomé, Maria Tereza C. and Zamudio, Kelly R. and Giovanelli, João G. R. and Haddad, Célio F. B. and Baldissera, Flávio A. and Alexandrino, João},
	month = jun,
	year = {2010},
	keywords = {Biogeography, Amphibian, Neotectonics, Neotropical, Paleoecological niche modeling, Refugia},
	pages = {1018--1031},
	file = {ScienceDirect Snapshot:/home/lucasjardim/Zotero/storage/97UW22H2/S1055790310000539.html:text/html;Thomé et al. - 2010 - Phylogeography of endemic toads and post-Pliocene .pdf:/home/lucasjardim/Zotero/storage/QYFRLGG5/Thomé et al. - 2010 - Phylogeography of endemic toads and post-Pliocene .pdf:application/pdf},
}

@incollection{peres_patterns_2020,
	address = {Cham},
	series = {Fascinating {Life} {Sciences}},
	title = {Patterns of {Species} and {Lineage} {Diversity} in the {Atlantic} {Rainforest} of {Brazil}},
	isbn = {978-3-030-31167-4},
	url = {https://doi.org/10.1007/978-3-030-31167-4_16},
	abstract = {The Atlantic rainforest of Brazil harbors outstanding species richness and levels of endemism, representing one of the most biodiverse regions on Earth. Yet, a lot is still unknown about the spatial and temporal evolution of its biota. While the history of the region is complex, with taxa often showing distinct richness patterns and evolutionary histories, some trends are common to a variety of lineages. Higher species richness is often found in the topographically complex coast of Rio de Janeiro and São Paulo, but the variety of environmental spaces available within this domain, tied to the different niches explored by its species, also support the existence of other patterns of species accumulation. The biological communities that inhabit the southern portions of the Atlantic forest are clearly distinct from those that occupy the northern range of the domain: several taxa undergo turnover in the Doce river valley (state of Espírito Santo), while others shift further south (near the Rio de Janeiro/São Paulo state boundary), or further north (state of Bahia). Areas of endemism have been recognized within the forest; while their boundaries do not perfectly match across all taxonomic groups, a nested pattern is detected, with contiguous areas of endemism defined by low-dispersal organisms (e.g., harvestmen) often fitting within more inclusive endemism centers defined by high-dispersal groups (e.g., birds). To date, the fauna and flora has been compartmentalized into five main areas of endemism: (1) Pernambuco, (2) Coastal Bahia, (3) Central Bahia, (4) Serra do Mar (often with further subregions), and (5) Paraná/Araucaria (Fig. 16.2). Here, we summarize main spatial patterns of diversity, flagging areas of higher species accumulation, turnover, and endemism. We also review main patterns of lineage divergence and population structure recovered from molecular phylogenies and phylogeographic studies, and explore some of the most common diversification hypotheses proposed for the Atlantic forest biota to date. We demonstrate that the spatial turnover of lineages within species largely mirrors that of species within communities; both climate change and geographic barriers appear to have acted in combination to produce patterns of diversification. However, while geographic patterns of species and genetic diversity are similar across Atlantic forest organisms, their underlying processes are not.},
	language = {en},
	urldate = {2023-03-07},
	booktitle = {Neotropical {Diversification}: {Patterns} and {Processes}},
	publisher = {Springer International Publishing},
	author = {Peres, Elen A. and Pinto-da-Rocha, Ricardo and Lohmann, Lúcia G. and Michelangeli, Fabián A. and Miyaki, Cristina Y. and Carnaval, Ana Carolina},
	editor = {Rull, Valentí and Carnaval, Ana Carolina},
	year = {2020},
	doi = {10.1007/978-3-030-31167-4_16},
	keywords = {Phylogeography, Biodiversity, Beta diversity, Biogeography, Community ecology, Neotropics},
	pages = {415--447},
}

@incollection{pellens_biodiversity_2010,
	title = {Biodiversity conservation and management in the {Brazilian} {Atlantic} {Forest}: {Every} fragment must be considered},
	isbn = {978-1-60876-458-7},
	shorttitle = {Biodiversity conservation and management in the {Brazilian} {Atlantic} {Forest}},
	abstract = {O capítulo contém uma síntese sobre os objetivos da Fundação BIONATIVA e sua importância para a conservação da floresta. Os dados científicos foram obtidos com o apoio da Fundação BIONATIVA},
	booktitle = {Biodiversity {Conservation}: {New} {Research}},
	author = {Pellens, Roseli and Garay, Irene and Grandcolas, Philippe},
	month = jan,
	year = {2010},
	note = {Journal Abbreviation: Biodiversity Conservation: New Research},
	pages = {1--35},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/YEN2CEAZ/Pellens et al. - 2010 - Biodiversity conservation and management in the Br.pdf:application/pdf},
}

@article{silveira_pleistocene_2019,
	title = {Pleistocene climatic instability drove the historical distribution of forest islands in the northeastern {Brazilian} {Atlantic} {Forest}},
	volume = {527},
	issn = {0031-0182},
	url = {https://www.sciencedirect.com/science/article/pii/S003101821830840X},
	doi = {10.1016/j.palaeo.2019.04.028},
	abstract = {To investigate the past spatial dynamics of Atlantic Forest (AF) ‘island-like’ enclaves in northeastern Brazil, we employed ecological niche modeling (ENM) using a set of georeferenced records of 13 woody plant species. ENMs were constructed using the Ensemble forecasting approach and were projected into past climatic conditions for the last interglacial period (LIG, 120 kyr), last glacial maximum (LGM, 21 kyr), and the Middle Holocene (MH, 6 kyr). Our results suggest an expansion of wetter forests during the LGM into areas currently covered by the Caatinga seasonally dry woodlands, with recent retraction to the current distribution. Central AF islands located south of the São Francisco River underwent a different history compared to Northern AF islands north of this river: the former were mostly connected to coastal AF since the LIG (with a very recent separation), whereas the latter presented a more dynamic historical distribution. Results reveal contrasting spatiotemporal histories of forest instability and isolation across the various enclaves, supporting three main biogeographic hypotheses: i) moderate connectivity with coastal AF and a recent population bottleneck in the Araripe and Pernambuco/Paraíba enclaves, ii) low connectivity to, and long-term isolation from, other enclaves, as well as recent population bottleneck, in the northernmost North Ceará enclaves; and iii) high connectivity with coastal AF and recent population expansion in the southernmost Chapada Diamantina enclaves. Future comparative phylogeography studies will largely aid in assessing the herein proposed biogeographic scenarios during the highly dynamic recent history of the AF enclaves.},
	language = {en},
	urldate = {2023-03-07},
	journal = {Palaeogeography, Palaeoclimatology, Palaeoecology},
	author = {Silveira, Mario Henrique Barros and Mascarenhas, Rilquer and Cardoso, Domingos and Batalha-Filho, Henrique},
	month = aug,
	year = {2019},
	keywords = {Phylogeography, Neotropics, Ecological niche modeling, Forest enclaves},
	pages = {67--76},
}

@article{resende_pliocene_2010,
	title = {Pliocene and {Pleistocene} events shaping the genetic diversity within the central corridor of the {Brazilian} {Atlantic} {Forest}},
	volume = {101},
	issn = {0024-4066},
	url = {https://doi.org/10.1111/j.1095-8312.2010.01534.x},
	doi = {10.1111/j.1095-8312.2010.01534.x},
	abstract = {Dinoponera lucida (Formicidae; Ponerinae) is an extinction-threatened species of ant which is endemic in the central corridor of the Atlantic Forest. We used mitochondrial sequences of the Cox1, Cox2 and Cytb genes in order to infer some aspects of the evolutionary history and phylogeography of this ant. High genetic divergence and population structure were observed for the whole species. The current pattern of D. lucida diversity seems to be shaped during different geological times: middle Pliocene, early Pleistocene and mainly late Pleistocene, when the reduction of populations generated a structure pattern of the genetic variation of this species. Our data show that this structure results from the maintenance of populations of D. lucida within very small putative refuges to the south of the central Bahia refugium. We thus argue that, for some Atlantic forest endemic species, especially those resistant to very small fragments of forest, such as D. lucida, the small putative refuges were as important as, or even more important than, larger and stable refuges for the creation and maintenance of diversity, adding another piece to the puzzle of the mechanisms underlying local endemism.},
	number = {4},
	urldate = {2023-03-07},
	journal = {Biological Journal of the Linnean Society},
	author = {RESENDE, HELDER C. and YOTOKO, KARLA S. C. and DELABIE, JACQUES H. C. and COSTA, MARCO A. and CAMPIOLO, SOFIA and TAVARES, MARA G. and CAMPOS, LUCIO A. O. and FERNANDES-SALOMÃO, TÂNIA M.},
	month = dec,
	year = {2010},
	pages = {949--960},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/YTSZNNQF/RESENDE et al. - 2010 - Pliocene and Pleistocene events shaping the geneti.pdf:application/pdf},
}

@article{cunha_mineralogical_2019,
	title = {Mineralogical and chemical attributes of soils from the {Brazilian} {Atlantic} {Forest} domain},
	volume = {76},
	copyright = {Copyright (c) 2019 Scientia Agricola},
	issn = {1678-992X},
	url = {https://www.revistas.usp.br/sa/article/view/154152},
	doi = {10.1590/1678-992x-2017-0109},
	abstract = {The Atlantic Forest is one of the most important and yet the most devastated Brazilian biome, occupying in the past the majority of the East Atlantic Coast. Therefore, a detailed knowledge of the soils near the coastal line influenced by this biome is essential for land use and management of these environments. The aim of this study was to acquire a deeper knowledge of the chemistry, mineralogy and genesis of soils in two micro-watersheds of the Atlantic Forest Biome. Eight soil profiles were sampled and described along one transect. Both young and more developed soils exhibit low fertility and low Fe2O3 content. The Oxic Dystrudepts are less dystrophic than the other soils studied and exhibit greater availability of K+, due to the mixing of weathered material and primary minerals. Transitions from shallow to deep soils are more common in rejuvenated landscapes. All soils are kaolinitic (Kt), with low levels of goethite (Gt) and hematite (Hm), and contain secondary 2:1 minerals such as mica (Mi) and, in the youngest soils, hydroxy-interlayered vermiculite (HIV) and interstratified mica-hydroxy-interlayered vermiculite (MiHIV). The widespread presence of gibbsite (Gb) in soils, including the Lithic Udifolist, indicates high rates of both pedogenesis and morphogenesis. The gibbsite showed good crystallinity suggesting that climate, terrain and good drainage favored its formation and stability.},
	language = {en},
	number = {1},
	urldate = {2023-03-07},
	journal = {Scientia Agricola},
	author = {Cunha, Alexson de Mello and Fontes, Maurício Paulo Ferreira and Lani, João Luiz},
	month = jan,
	year = {2019},
	note = {Number: 1},
	keywords = {coastal plains, coastal uplands, Forest biome, pedogenesis},
	pages = {82--92},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/9BIAIDU2/Cunha et al. - 2019 - Mineralogical and chemical attributes of soils fro.pdf:application/pdf},
}

@article{mader_when_2021,
	title = {When phylogeography meets niche suitability to unravel the evolutionary history of a shrub from the {Brazilian} {Atlantic} {Forest}},
	volume = {195},
	issn = {0024-4074},
	url = {https://doi.org/10.1093/botlinnean/boaa073},
	doi = {10.1093/botlinnean/boaa073},
	abstract = {The Brazilian Atlantic Forest (BAF) is one of the most impacted biomes in the world, and in this region, there are several examples of the effects of Pleistocene climate changes among the species found there. Athenaea fasciculata (Solanaceae) is a forest component distributed mainly throughout the BAF extension. Here, we investigated the genetic diversity and population structure of A. fasciculata based on plastid and nuclear markers, aiming to better understand the impact of Pleistocene climate changes on BAF vegetation. We used population genetics, demographic methods and ecological niche modelling coupled to an evolutionary approach to describe the species distribution across time. The phylogeographic analysis of A. fasciculata indicated that Pleistocene climate changes played an important role in its evolution. The species is structured in two groups of populations that emerged from different refugia and were under different climate influences, supporting previously proposed connections between the Atlantic and Amazon Forests, the two most important Neotropical rainforests.},
	number = {1},
	urldate = {2023-03-07},
	journal = {Botanical Journal of the Linnean Society},
	author = {Mäder, Geraldo and Zamberlan, Priscilla M and Segatto, Ana Lucia A and Stehmann, João R and Bonatto, Sandro L and Freitas, Loreta B},
	month = jan,
	year = {2021},
	pages = {77--92},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/EIAK462H/5900934.html:text/html},
}

@article{de_mello_martins_historical_2011,
	title = {Historical biogeography of the {Brazilian} {Atlantic} forest and the {Carnaval}–{Moritz} model of {Pleistocene} refugia: what do phylogeographical studies tell us?},
	volume = {104},
	issn = {0024-4066},
	shorttitle = {Historical biogeography of the {Brazilian} {Atlantic} forest and the {Carnaval}–{Moritz} model of {Pleistocene} refugia},
	url = {https://doi.org/10.1111/j.1095-8312.2011.01745.x},
	doi = {10.1111/j.1095-8312.2011.01745.x},
	abstract = {The present study uses published phylogeographical studies to test the Carnaval–Moritz (CM) model of forest dynamics in the Atlantic forest of Brazil. The model predicts that a large forested area in the north–central region of this biome has remained stable during the last glacial maximum, and only relicts in its current southernmost distributions. All available sequences for phylogeographical studies on vertebrates on the Atlantic forest were obtained from GenBank. All datasets consisted of mitochondrial sequences and were submitted to the same analyses, including time of divergence and migration rates between phylogeographical lineages, as well as historical demography analyses, including neutrality tests and Ne estimates. The species studied showed different degrees of phylogeographical structure. Two contact zones are defined: one very heterogeneous in south-east Brazil that was largely congruent with the CM model and one around the Doce river further north. Population genetics analyses showed a smaller effective number on southern population, and most of these southern populations showed evidence for recent demographic expansion. These features are also in agreement with the CM model. Additionally, divergence/expansion events dated back to the Pleistocene epoch in all but one organism. According to hierarchical approximate Bayesian computation analysis, most of the data can be attributed to a single event. The results highlight the need for more finescale studies in the Atlantic forest.},
	number = {3},
	urldate = {2023-03-07},
	journal = {Biological Journal of the Linnean Society},
	author = {DE MELLO MARTINS, FELIPE},
	month = nov,
	year = {2011},
	pages = {499--509},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/WGHAZ5M7/DE MELLO MARTINS - 2011 - Historical biogeography of the Brazilian Atlantic .pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/MALN3S2K/2452410.html:text/html},
}

@article{de_carvalho_araujo_old_2022,
	title = {Old climatically-buffered infertile landscapes ({OCBILs}): more than harsh habitats, {Atlantic} {Forest} inselbergs can be drivers of evolutionary diversity},
	volume = {19},
	issn = {1993-0321},
	shorttitle = {Old climatically-buffered infertile landscapes ({OCBILs})},
	url = {https://doi.org/10.1007/s11629-021-7013-y},
	doi = {10.1007/s11629-021-7013-y},
	abstract = {Granite-gneiss rock outcrop inselbergs are ancient stable ecosystems with old, climatically-buffered infertile landscapes (OCBILs). Although inselbergs provide key ecosystem services, little is done for their conservation and, so far, a lot of their unknown evolutionary history has already been lost by human activities. Using a fine-scale approach, here we tested if habitat and environmental filtering (the inselberg’s harshness) affect the evolutionary diversity of an Atlantic Forest inselberg in Brazil. We recorded all trees with a diameter at breast height ≥ 5 cm in 20 plots in four habitat types (total sampled area of 0.8 hectares), from highest to lowest: island, hillside, foothill, and semideciduous forest (matrix). We also collected soil samples for chemical, textural and physical soil characterization. We fitted linear models to test the effects of soil and habitat on plot-level metrics of phylogenetic diversity and structure, lineage diversity, phylogenetic β-diversity, and evolutionary distinctiveness. We found that the upper inselberg habitats contain a distinct set of ancient, closely related, harsh-tolerant lineages, as well as a subset of lineages that persist under harsh conditions with a certain degree of water availability. The inferior inselberg habitats harbor higher lineage diversity than expected by chance. Soil strongly predicted evolutionary diversity. We concluded that soil depth, slope, nutrients and texture (environmental filtering) and habitat types and topography (habitat filtering) shape the evolutionary history contained in fine-scale inselberg habitats, which should encourage the conservation of these ancient ecosystems.},
	language = {en},
	number = {9},
	urldate = {2023-03-07},
	journal = {Journal of Mountain Science},
	author = {de Carvalho Araújo, Felipe and de Aguiar-Campos, Natália and de Souza, Cleber Rodrigo and Paula, Eduardo de Paiva and dos Santos, Rubens Manoel},
	month = sep,
	year = {2022},
	keywords = {Atlantic Forest, Environmental filters, Niche conservatism, Phylogenetic diversity, Soil fertility, Terrestrial Island},
	pages = {2528--2543},
}

@incollection{marques_atlantic_2021,
	address = {Cham},
	title = {The {Atlantic} {Forest}: {An} {Introduction} to the {Megadiverse} {Forest} of {South} {America}},
	isbn = {978-3-030-55322-7},
	shorttitle = {The {Atlantic} {Forest}},
	url = {https://doi.org/10.1007/978-3-030-55322-7_1},
	abstract = {The Atlantic Forest, the second largest forest in South America and one of the most biodiverse biomes in the world, is also one of the most threatened and important for conservation. In this chapter, we introduce the Atlantic Forest focusing on describing the evolution of knowledge, the geographical limits, and the current proposals of sectorization in ecological units. The knowledge of the Atlantic Forest can be explained by three successive phases: (1) the science of naturalists (the late eighteenth century to the late nineteenth century), where the flora and fauna were described by European travelers; (2) the rise of science in Brazil, characterized by the organization of Atlantic Forest biodiversity in collections (1890–1985); and (3) the contemporary era (1985–2020), characterized by the publication of 8226 studies focused on 4 main topics – biogeography and systematics, conservation and biodiversity, plant-animal interaction, and populations and community. The understanding of the distribution limits of the Atlantic Forest biome (11 different proposals), as well as sectorization (4 different proposals), has been the subject of several studies and legislations, which are presented and discussed. Additionally, we present terminologies usually used to designate the Atlantic Forest as a whole, as well as its sectors, to facilitate understanding in future studies. We conclude that understanding the Atlantic Forest remains a long and endless exercise, given its complexity, increased knowledge, and continuous threats.},
	language = {en},
	urldate = {2023-03-07},
	booktitle = {The {Atlantic} {Forest}: {History}, {Biodiversity}, {Threats} and {Opportunities} of the {Mega}-diverse {Forest}},
	publisher = {Springer International Publishing},
	author = {Marques, Marcia C. M. and Trindade, Weverton and Bohn, Amabily and Grelle, Carlos E. V.},
	editor = {Marques, Marcia C. M. and Grelle, Carlos E. V.},
	year = {2021},
	doi = {10.1007/978-3-030-55322-7_1},
	keywords = {Atlantic Rain Forest, Bibliometric, Biodiversity, Conservation, Geographical limits, Scientific knowledge},
	pages = {3--23},
}

@article{bicudo_da_silva_three_2020,
	title = {Three decades of land-use and land-cover change in mountain regions of the {Brazilian} {Atlantic} {Forest}},
	volume = {204},
	issn = {0169-2046},
	url = {https://www.sciencedirect.com/science/article/pii/S0169204620312743},
	doi = {10.1016/j.landurbplan.2020.103948},
	abstract = {Mountain regions are key hotspots for biodiversity conservation and for provisioning ecosystem services. Containing fragile ecosystems and home to millions of inhabitants, mountains are also places of great value for tourism, cultural practices and endemic species. In this paper, we developed the first multitemporal land-use and land-cover assessment of mountain regions within the Brazilian Atlantic Forest (BAF), the most endangered Brazilian tropical biome. The study used spatial thematic mapping for 1985, 2001, and 2018 to understand changes in landscape composition, patterns of change in patch metrics of natural vegetation cover, and correlations between human population and natural vegetation. Change detection techniques, landscape metrics and statistical tests (e.g., Kruskal-Wallis) were applied. We found that landscape composition did not change at significant levels over the 34 years (1985–2018), but that intense exchange between natural vegetation and agriculture creates a shifting mosaic steady-state. Additionally, natural vegetation loss was 13-fold lower within mountains than in other areas of the BAF biome, which indicates lower human-induced change in mountain regions. Urban and rural population (number of inhabitants) showed positive correlation with natural vegetation at municipality level indicating higher presence of population in municipalities with large extents of natural vegetation. Analysis demonstrated that the study region was under lower population pressure and urban growth compared to other areas and had kept large extents of natural vegetation within large patches, different to what is observed at biome level. However, telecoupling processes may result in indirect land changes in mountain regions of the BAF biome. Our results indicate that mountains play a key role in conserving the remnants of the BAF.},
	language = {en},
	urldate = {2023-03-07},
	journal = {Landscape and Urban Planning},
	author = {Bicudo da Silva, Ramon Felipe and Millington, James D. A. and Moran, Emilio F. and Batistella, Mateus and Liu, Jianguo},
	month = dec,
	year = {2020},
	keywords = {Environmental change, Fragmentation, Landscape, Patch metrics, Tropical forest},
	pages = {103948},
	file = {Accepted Version:/home/lucasjardim/Zotero/storage/SRMAFL6A/Bicudo da Silva et al. - 2020 - Three decades of land-use and land-cover change in.pdf:application/pdf;ScienceDirect Snapshot:/home/lucasjardim/Zotero/storage/WRABLJVK/S0169204620312743.html:text/html},
}

@article{landau_omniscapejl_2021,
	title = {Omniscape.jl: {Software} to compute omnidirectional landscape connectivity},
	volume = {6},
	issn = {2475-9066},
	shorttitle = {Omniscape.jl},
	url = {https://joss.theoj.org/papers/10.21105/joss.02829},
	doi = {10.21105/joss.02829},
	abstract = {Omniscape.jl is a software package that implements the Omniscape algorithm (McRae et al., 2016) to compute landscape connectivity. It is written in the Julia programming language (Bezanson et al., 2017) to be fast, scalable, and easy-to-use. Circuitscape.jl (Anantharaman et al., 2020), the package on which Omniscape.jl builds and expands, abstracts landscapes as two-dimensional electrical networks and solves for current flow. The current flow that results represents landscape connectivity. Omniscape.jl is novel in that it produces maps of “omni-directional” connectivity, which provide a spatial representation of connectivity between every possible pair of start and endpoints in the landscape. These maps can be used by researchers and landscape managers to understand and predict how ecological processes (e.g., animal movement, disease transmission, gene flow, and fire behavior) are likely to manifest in geographic space. Omniscape.jl makes use of Julia’s native multi-threading, making it readily scalable and deployable to high performance compute nodes. More information on the broader Circuitscape project, which is home to Circuitscape.jl and Omniscape.jl, can be found at circuitscape.org.},
	language = {en},
	number = {57},
	urldate = {2023-03-08},
	journal = {Journal of Open Source Software},
	author = {Landau, Vincent and Shah, Viral and Anantharaman, Ranjan and Hall, Kimberly},
	month = jan,
	year = {2021},
	pages = {2829},
	file = {Landau et al. - 2021 - Omniscape.jl Software to compute omnidirectional .pdf:/home/lucasjardim/Zotero/storage/LMN58RYL/Landau et al. - 2021 - Omniscape.jl Software to compute omnidirectional .pdf:application/pdf},
}

@incollection{cushman_biological_2013,
	title = {Biological corridors and connectivity},
	isbn = {978-1-118-52017-8},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/9781118520178.ch21},
	abstract = {The goal of this chapter is to describe the state of the art in quantitative corridor and connectivity modelling. It reviews several critical issues in modelling, and provides expert guidance and examples to help practitioners implement effective programmes to preserve, enhance or create connectivity among wildlife populations. It first reviews the fundamental task of estimating landscape resistance, comparing expert opinion and empirical methods. Next, it describes current methods of predicting connectivity from resistance surfaces. It concludes with discussion of how effectively to validate connectivity model predictions. In recent years least-cost (LC) modelling has become the dominant modelling tool to evaluate functional landscape connectivity, especially in applied studies. Advances in computing have allowed applications of graph algorithms to continuous landscapes instead of simple networks. Circuit and LC models represent two extremes in assumptions about movement and connectivity. A promising graph-theoretic approach to connectivity modelling is centrality analysis.},
	language = {en},
	urldate = {2022-12-08},
	booktitle = {Key {Topics} in {Conservation} {Biology} 2},
	publisher = {John Wiley \& Sons, Ltd},
	author = {Cushman, Samuel A. and McRae, Brad and Adriaensen, Frank and Beier, Paul and Shirley, Mark and Zeller, Kathy},
	year = {2013},
	doi = {10.1002/9781118520178.ch21},
	note = {Section: 21
\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/9781118520178.ch21},
	keywords = {connectivity modelling, graph theory, landscape resistance, least-cost (LC) modelling, population connectivity, quantitative corridor, wildlife populations},
	pages = {384--404},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/3HUA699P/9781118520178.html:text/html},
}

@article{anantharaman_circuitscape_2020,
	title = {Circuitscape in {Julia}: {High} {Performance} {Connectivity} {Modelling} to {Support} {Conservation} {Decisions}},
	volume = {1},
	issn = {2642-4029},
	shorttitle = {Circuitscape in {Julia}},
	url = {https://proceedings.juliacon.org/papers/10.21105/jcon.00058},
	doi = {10.21105/jcon.00058},
	abstract = {Anantharaman et al., (2020). Circuitscape in Julia: High Performance Connectivity Modelling to Support Conservation Decisions. JuliaCon Proceedings, 1(1), 58, https://doi.org/10.21105/jcon.00058},
	language = {en},
	number = {1},
	urldate = {2023-03-08},
	journal = {Proceedings of the JuliaCon Conferences},
	author = {Anantharaman, Ranjan and Hall, Kimberly and Shah, Viral B. and Edelman, Alan},
	month = jul,
	year = {2020},
	pages = {58},
	file = {Anantharaman et al. - 2020 - Circuitscape in Julia High Performance Connectivi.pdf:/home/lucasjardim/Zotero/storage/E6MYIXC5/Anantharaman et al. - 2020 - Circuitscape in Julia High Performance Connectivi.pdf:application/pdf},
}

@article{hall_circuitscape_2021,
	title = {Circuitscape in {Julia}: {Empowering} {Dynamic} {Approaches} to {Connectivity} {Assessment}},
	volume = {10},
	copyright = {http://creativecommons.org/licenses/by/3.0/},
	issn = {2073-445X},
	shorttitle = {Circuitscape in {Julia}},
	url = {https://www.mdpi.com/2073-445X/10/3/301},
	doi = {10.3390/land10030301},
	abstract = {The conservation field is experiencing a rapid increase in the amount, variety, and quality of spatial data that can help us understand species movement and landscape connectivity patterns. As interest grows in more dynamic representations of movement potential, modelers are often limited by the capacity of their analytic tools to handle these datasets. Technology developments in software and high-performance computing are rapidly emerging in many fields, but uptake within conservation may lag, as our tools or our choice of computing language can constrain our ability to keep pace. We recently updated Circuitscape, a widely used connectivity analysis tool developed by Brad McRae and Viral Shah, by implementing it in Julia, a high-performance computing language. In this initial re-code (Circuitscape 5.0) and later updates, we improved computational efficiency and parallelism, achieving major speed improvements, and enabling assessments across larger extents or with higher resolution data. Here, we reflect on the benefits to conservation of strengthening collaborations with computer scientists, and extract examples from a collection of 572 Circuitscape applications to illustrate how through a decade of repeated investment in the software, applications have been many, varied, and increasingly dynamic. Beyond empowering continued innovations in dynamic connectivity, we expect that faster run times will play an important role in facilitating co-production of connectivity assessments with stakeholders, increasing the likelihood that connectivity science will be incorporated in land use decisions.},
	language = {en},
	number = {3},
	urldate = {2023-03-08},
	journal = {Land},
	author = {Hall, Kimberly R. and Anantharaman, Ranjan and Landau, Vincent A. and Clark, Melissa and Dickson, Brett G. and Jones, Aaron and Platt, Jim and Edelman, Alan and Shah, Viral B.},
	month = mar,
	year = {2021},
	note = {Number: 3
Publisher: Multidisciplinary Digital Publishing Institute},
	keywords = {conservation planning, Circuitscape, computational ecology, dynamic connectivity, Earth observations, Julia programming language, landscape connectivity, Omniscape},
	pages = {301},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/CWTLH4G6/Hall et al. - 2021 - Circuitscape in Julia Empowering Dynamic Approach.pdf:application/pdf;Hall et al_2021_Circuitscape in Julia.pdf:/home/lucasjardim/Zotero/storage/HS466Y3T/Hall et al_2021_Circuitscape in Julia.pdf:application/pdf},
}

@article{peterman_resistancega_2018,
	title = {{ResistanceGA}: {An} {R} package for the optimization of resistance surfaces using genetic algorithms},
	volume = {9},
	issn = {2041-210X},
	shorttitle = {{ResistanceGA}},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.12984},
	doi = {10.1111/2041-210X.12984},
	abstract = {Understanding how landscape features affect functional connectivity among populations is a cornerstone of spatial ecology and landscape genetic analyses. However, parameterization of resistance surfaces that best describe connectivity is a challenging and often subjective process. ResistanceGA is an R package that utilizes a genetic algorithm to optimize resistance surfaces based on pairwise genetic data and effective distances calculated using CIRCUITSCAPE, least cost paths or random-walk commute times. Functions in this package allow for the optimization of categorical and continuous resistance surfaces, and simultaneous optimization of multiple resistance surfaces. ResistanceGA provides a coherent framework to optimize resistance surfaces without a priori assumptions, conduct model selection, and make inference about the contribution of each surface to total resistance. ResistanceGA fills a void in the landscape genetic toolbox, allowing for unbiased optimization of resistance surfaces and for the simultaneous optimization of multiple resistance surfaces to create novel composite resistance surfaces, but could have broader applicability to other fields of spatial ecological research.},
	language = {en},
	number = {6},
	urldate = {2023-03-07},
	journal = {Methods in Ecology and Evolution},
	author = {Peterman, William E.},
	year = {2018},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.12984},
	keywords = {landscape genetics, gene flow, commute distance, cost distance, genetic algorithm, least cost path, resistance distance, resistance optimization},
	pages = {1638--1647},
	file = {Peterman - 2018 - ResistanceGA An R package for the optimization of.pdf:/home/lucasjardim/Zotero/storage/QGH6I3PY/Peterman - 2018 - ResistanceGA An R package for the optimization of.pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/2M8WCNUC/2041-210X.html:text/html},
}

@misc{noauthor_circuitscape_nodate,
	title = {Circuitscape},
	url = {https://circuitscape.org/},
	abstract = {Circuitscape is an award-winning connectivity analysis software package which borrows algorithms from electronic circuit theory to predict patterns of movement, gene flow, and genetic differentiation among plant and animal populations in heterogeneous landscapes.
Circuitscape has rapidly become the most widely used connectivity analysis package in the world.
It is used by numerous state, federal, and local agencies in the USA, and by government ministries and NGOs for conservation planning on six continents.
It routinely appears in journals like PNAS, Nature Genetics, Ecology, Ecological Applications, Ecology Letters, Landscape Ecology, Evolution, Heredity, Bioscience, Molecular Ecology, Conservation Biology, and many others},
	language = {en},
	urldate = {2023-03-08},
	journal = {Circuitscape},
	file = {Snapshot:/home/lucasjardim/Zotero/storage/IIKLJIAH/circuitscape.org.html:text/html},
}

@article{schloss_no-regrets_2022,
	title = {“{No}-regrets” pathways for navigating climate change: planning for connectivity with land use, topography, and climate},
	volume = {32},
	issn = {1939-5582},
	shorttitle = {“{No}-regrets” pathways for navigating climate change},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/eap.2468},
	doi = {10.1002/eap.2468},
	abstract = {As both plant and animal species shift their ranges in response to a changing climate, maintaining connectivity between present habitat and suitable habitat in the future will become increasingly important to ensure lasting protection for biodiversity. Because the temporal period commensurate with planning for mid-century change is multi-generational for most species, connectivity designed to facilitate climate adaptation requires pathways with ‘stepping-stones’ between current and future habitat. These areas should have habitats suitable not only for dispersal, but for all aspects of species lifecycles. We integrated present-day land use, topographic diversity, and projections of shifting climate regimes into a single connectivity modeling approach to identify pathways for mid-century shifts in species ranges. Using Omniscape we identified climate linkages, or areas important for climate change-driven movement, as the areas with more current flow than would be expected in the absence of climate considerations. This approach identified connectivity potential between natural lands in the present climate and natural lands with future analogous climate following topo-climatically diverse routes. We then translated the model output into a strategic framework to improve interpretation and to facilitate a more direct connection with conservation action. Across modified landscapes, pathways important to climate-driven movement were highly coincident with the last remaining present-day linkages, reinforcing their importance. Across unfragmented lands, the presence of climate-adapted pathways helped inform the prioritization of conservation actions in areas where multiple connectivity options still exist. Many climate linkages follow major watercourses along elevational gradients, highlighting the importance of protecting or managing for these natural linear pathways that provide movement routes for climate adaptation. By integrating enduring landscape features with climate projections and present-day land uses, our approach reveals “no-regrets” pathways to plan for a connected landscape in an uncertain future.},
	language = {en},
	number = {1},
	urldate = {2023-03-08},
	journal = {Ecological Applications},
	author = {Schloss, Carrie A. and Cameron, D. Richard and McRae, Brad H. and Theobald, David M. and Jones, Aaron},
	year = {2022},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/eap.2468},
	keywords = {climate change, connectivity, conservation planning, Circuitscape, climate analogs, California, climate adaptation, corridor, linkage, microclimate, range shifts, topographic diversity},
	pages = {e02468},
	file = {Full Text PDF:/home/lucasjardim/Zotero/storage/9828RUF7/Schloss et al. - 2022 - “No-regrets” pathways for navigating climate chang.pdf:application/pdf},
}

@article{mcrae_using_2008,
	title = {Using circuit theory to model connectivity in ecology, evolution, and conservation},
	volume = {89},
	issn = {0012-9658},
	url = {http://doi.wiley.com/10.1890/07-1861.1},
	doi = {10.1890/07-1861.1},
	abstract = {Connectivity among populations and habitats is important for a wide range of ecological processes. Understanding, preserving, and restoring connectivity in complex landscapes requires connectivity models and metrics that are reliable, efficient, and process based. We introduce a new class of ecological connectivity models based in electrical circuit theory. Although they have been applied in other disciplines, circuit-theoretic connectivity models are new to ecology. They offer distinct advantages over common analytic connectivity models, including a theoretical basis in random walk theory and an ability to evaluate contributions of multiple dispersal pathways. Resistance, current, and voltage calculated across graphs or raster grids can be related to ecological processes (such as individual movement and gene flow) that occur across large population networks or landscapes. Efficient algorithms can quickly solve networks with millions of nodes, or landscapes with millions of raster cells. Here we review basic circuit theory, discuss relationships between circuit and random walk theories, and describe applications in ecology, evolution, and conservation. We provide examples of how circuit models can be used to predict movement patterns and fates of random walkers in complex landscapes and to identify important habitat patches and movement corridors for conservation planning.},
	language = {en},
	number = {10},
	urldate = {2023-03-16},
	journal = {Ecology},
	author = {McRae, Brad H. and Dickson, Brett G. and Keitt, Timothy H. and Shah, Viral B.},
	month = oct,
	year = {2008},
	keywords = {graph theory, dispersal, landscape connectivity, circuit theory, effective distance, gene flow, habitat fragmentation, isolation, metapopulation theory, reserve design},
	pages = {2712--2724},
	file = {McRae et al. - 2008 - Using circuit theory to model connectivity in ecol.pdf:/home/lucasjardim/Zotero/storage/PLWDFRCZ/McRae et al. - 2008 - Using circuit theory to model connectivity in ecol.pdf:application/pdf;Snapshot:/home/lucasjardim/Zotero/storage/ZSVS4WHR/07-1861.html:text/html},
}

@article{wu_geemap_2020,
	title = {geemap: {A} {Python} package for interactive mapping with {Google} {Earth} {Engine}},
	volume = {5(), ,},
	doi = {https://doi.org/10.21105/joss.02305},
	number = {51},
	journal = {Journal of Open Source Software},
	author = {Wu, Qiusheng},
	year = {2020},
	note = {93 citations (Crossref) [2023-11-30]},
	pages = {2305},
}

@article{farr_shuttle_2007,
	title = {The {Shuttle} {Radar} {Topography} {Mission}},
	volume = {45},
	url = {https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2005RG000183},
	doi = {https://doi.org/10.1029/2005RG000183},
	abstract = {The Shuttle Radar Topography Mission produced the most complete, highest-resolution digital elevation model of the Earth. The project was a joint endeavor of NASA, the National Geospatial-Intelligence Agency, and the German and Italian Space Agencies and flew in February 2000. It used dual radar antennas to acquire interferometric radar data, processed to digital topographic data at 1 arc sec resolution. Details of the development, flight operations, data processing, and products are provided for users of this revolutionary data set.},
	number = {2},
	journal = {Reviews of Geophysics},
	author = {Farr, Tom G. and Rosen, Paul A. and Caro, Edward and Crippen, Robert and Duren, Riley and Hensley, Scott and Kobrick, Michael and Paller, Mimi and Rodriguez, Ernesto and Roth, Ladislav and Seal, David and Shaffer, Scott and Shimada, Joanne and Umland, Jeffrey and Werner, Marian and Oskin, Michael and Burbank, Douglas and Alsdorf, Douglas},
	year = {2007},
	note = {4593 citations (Crossref) [2023-11-30]
\_eprint: https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2005RG000183},
	keywords = {interferometry, radar, topography},
}

@misc{python_software_foundation_python_2023,
	title = {Python {Language} {Reference}},
	author = {{Python Software Foundation}},
	year = {2023},
}

@misc{qgis_development_team_qgis_2023,
	title = {{QGIS} {Geographic} {Information} {System}},
	url = {https://www.qgis.org},
	publisher = {QGIS Association},
	author = {{QGIS Development Team}},
	year = {2023},
}

@book{hannah_lee_climate_2021,
	edition = {Third},
	title = {Climate {Change} {Biology}},
	isbn = {978-0-08-102975-6},
	publisher = {Academic Press},
	author = {Hannah, Lee},
	year = {2021},
}

@article{vitasse_yann_global_2018,
	title = {Global warming leads to more uniform spring phenology across elevations},
	volume = {115},
	doi = {10.1073/pnas.1717342115},
	number = {5},
	journal = {Proceedings of the National Academy of Sciences of the United States of America},
	author = {Vitasse, Yann and Signarbieux, Constant and Fu, Yongshuo H.},
	year = {2018},
	note = {224 citations (Crossref) [2024-02-28]},
	pages = {1004--1008},
}

@article{mccain_christy_m_body_2014,
	title = {Body size and activity times mediate mammalian responses to climate change},
	volume = {20},
	doi = {10.1111/gcb.12499},
	number = {6},
	journal = {Global Change Biology},
	author = {Mccain, Christy M. and King, Sarah R.B.},
	year = {2014},
	note = {136 citations (Crossref) [2024-02-28]},
	pages = {1760--1769},
}

@article{antao_laura_h_climate_2022,
	title = {Climate change reshuffles northern species within their niches},
	volume = {12},
	number = {6},
	journal = {Nature Climate Change},
	author = {Antão, Laura H. and Weigel, Benjamin and Strona, Giovanni and Hällfors, Maria and Kaarlejärvi, Elina and Dallas, Tad and Opedal, Øystein H. and Heliölä, Janne and Henttonen, Heikki and Huitu, Otso and Korpimäki, Erkki and Kuussaari, Mikko and Lehikoinen, Aleksi and Leinonen, Reima and Lindén, Andreas and Merilä, Päivi and Pietiäinen, Hannu and Pöyry, Juha and Salemaa, Maija and Tonteri, Tiina and Vuorio, Kristiina and Ovaskainen, Otso and Saastamoinen, Marjo and Vanhatalo, Jarno and Roslin, Tomas and Laine, Anna Liisa},
	year = {2022},
	pages = {587--592},
}

@article{foden_wendy_b_climate_2019,
	title = {Climate change vulnerability assessment of species},
	volume = {10},
	number = {1},
	journal = {WIREs Climate Change},
	author = {Foden, Wendy B. and Young, Bruce E. and Akçakaya, H. Resit and Garcia, Raquel A. and Hoffmann, Ary A. and Stein, Bruce A. and Thomas, Chris D. and Wheatley, Christopher J. and Bickford, David and Carr, Jamie A. and Hole, David G. and Martin, Tara G. and Pacifici, Michela and Pearce‐Higgins, James W. and Platts, Philip J. and Visconti, Piero and Watson, James E. M. and Huntley, Brian},
	year = {2019},
	pages = {10:e551},
}

@article{nabout_joao_carlos_global_2011,
	title = {Global climate change and the production of "{Pequi}" fruits ({Caryocar} brasiliense) in the {Brazilian} {Cerrado}},
	volume = {9},
	number = {1},
	journal = {Natureza \& Conservação},
	author = {Nabout, João Carlos and Oliveira, Gislene and Magalhães, Mara Rúbia and Terribile, Levi Carina and de Almeida, Francisco Alberto Severo},
	year = {2011},
	pages = {55--60},
}

@article{lemes_priscila_climate_2014-1,
	title = {Climate change threatens protected areas of the {Atlantic} {Forest}},
	volume = {23},
	doi = {10.1007/s10531-013-0605-2},
	number = {2},
	journal = {Biodiversity and Conservation},
	author = {Lemes, Priscila and Melo, Adriano Sanches and Loyola, Rafael Dias},
	year = {2014},
	note = {83 citations (Crossref) [2024-02-28]},
	pages = {357--368},
}

@article{gillings_simon_directionality_2015,
	title = {Directionality of recent bird distribution shifts and climate change in {Great} {Britain}},
	volume = {21},
	doi = {10.1111/gcb.12823},
	number = {6},
	journal = {Global Change Biology},
	author = {Gillings, Simon and Balmer, Dawn E. and Fuller, Robert J.},
	year = {2015},
	note = {104 citations (Crossref) [2024-02-28]},
	pages = {2155--2168},
}

@article{memmott_jane_global_2007,
	title = {Global warming and the disruption of plant–pollinator interactions},
	volume = {10},
	doi = {10.1111/j.1461-0248.2007.01061.x},
	number = {8},
	journal = {Ecology Letters},
	author = {Memmott, Jane and Craze, Paul G. and Waser, Nickolas M. and Price, Mary V.},
	year = {2007},
	note = {870 citations (Crossref) [2024-02-28]},
	pages = {710--717},
}

@article{bender_irene_m_a_projected_2019,
	title = {Projected impacts of climate change on functional diversity of frugivorous birds along a tropical elevational gradient},
	volume = {9},
	number = {1},
	journal = {Scientific Reports},
	author = {Bender, Irene M. A. and Kissling, W. Daniel and Böhning-Gaese, Katrin and Hensen, Isabell and Kühn, Ingolf and Nowak, Larissa and Töpfer, Till and Wiegand, Thorsten and Dehling, D. Matthias and Schleuning, Matthias},
	year = {2019},
	pages = {17708},
}

@article{montoya_jose_m_climate_2010,
	title = {Climate change, biotic interactions and ecosystem services},
	volume = {365},
	doi = {10.1098/rstb.2010.0114},
	number = {1549},
	journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
	author = {Montoya, José M. and Raffaelli, Dave},
	year = {2010},
	note = {221 citations (Crossref) [2024-02-28]},
	pages = {2013--2018},
}

@article{souza_kelly_silva_evolutionary_2023,
	title = {Evolutionary rescue and geographic range shifts under climate change for global amphibians},
	volume = {11},
	doi = {10.3389/fevo.2023.1038018},
	journal = {Frontiers in Ecology and Evolution},
	author = {Souza, Kelly Silva and Fortunato, Danilo Siqueira and Jardim, Lucas and Terribile, Levi Carina and Lima-Ribeiro, Matheus Souza and Mariano, Camilla Ávila and Pinto-Ledezma, Jesús Nazareno and Loyola, Rafael and Dobrovolski, Ricardo and Rangel, Thiago Fernando and Machado, Iberê Farina and Rocha, Tainá and Batista, Mariana Gomes and Lorini, Maria Lucia and Vale, Mariana Moncassim and Navas, Carlos Arturo and Maciel, Natan Medeiros and Villalobos, Fabricio and Olalla-Tarraga, Miguel Ângelo and Rodrigues, João Fabrício Mota and Gouveia, Sidney Feitosa and Diniz-Filho, José Alexandre Felizola},
	year = {2023},
}

@article{mantyka-pringle_chrystal_s_interactions_2012,
	title = {Interactions between climate and habitat loss effects on biodiversity: {A} systematic review and meta-analysis},
	volume = {8},
	doi = {10.1111/j.1365-2486.2011.02593.x},
	number = {4},
	journal = {Global Change Biology},
	author = {Mantyka-pringle, Chrystal S. and Martin, Tara G. and Rhodes, Jonathan R.},
	year = {2012},
	pages = {1239--1252},
}

@article{borges_fabio_julio_alves_climate_2020,
	title = {Climate and land-use change refugia for {Brazilian} {Cerrado} birds},
	volume = {18},
	number = {2},
	journal = {Perspectives in Ecology and Conservation},
	author = {Borges, Fábio Júlio Alves and Loyola, Rafael},
	year = {2020},
	pages = {109--115},
}

@article{newbold_tim_global_2015,
	title = {Global effects of land use on local terrestrial biodiversity},
	volume = {520},
	number = {7545},
	journal = {Nature},
	author = {Newbold, Tim and Hudson, Lawrence N. and Hill, Samantha L. L. and Contu, Sara and Lysenko, Igor and Senior, Rebecca A. and Börger, Luca and Bennett, Dominic J. and Choimes, Argyrios and Collen, Ben and Day, Julie and De Palma, Adriana and Díaz, Sandra and Echeverria-Londoño, Susy and Edgar, Melanie J. and Feldman, Anat and Garon, Morgan and Harrison, Michelle L. K. and Alhusseini, Tamera and Ingram, Daniel J. and Itescu, Yuval and Kattge, Jens and Kemp, Victoria and Kirkpatrick, Lucinda and Kleyer, Michael and Correia, David Laginha Pinto and Martin, Callum D. and Meiri, Shai and Novosolov, Maria and Pan, Yuan and Phillips, Helen R. P. and Purves, Drew W. and Robinson, Alexandra and Simpson, Jake and Tuck, Sean L. and Weiher, Evan and White, Hannah J. and Ewers, Robert M. and Mace, Georgina M. and Scharlemann, Jörn P. W. and Purvis, Andy},
	year = {2015},
	pages = {45--50},
}

@article{winkler_karina_global_2021,
	title = {Global land use changes are four times greater than previously estimated},
	volume = {12},
	doi = {10.1038/s41467-021-22702-2},
	number = {1},
	journal = {Nature Communications},
	author = {Winkler, Karina and Fuchs, Richard and Rounsevell, Mark and Herold, Martin},
	year = {2021},
	pages = {2501},
}

@article{cordier_javier_m_global_2021,
	title = {A global assessment of amphibian and reptile responses to land-use changes},
	volume = {253},
	doi = {10.1016/j.biocon.2020.108863},
	journal = {Biological Conservation},
	author = {Cordier, Javier M. and Aguilar, Ramiro and Lescano, Julián N. and Leynaud, Gerardo C. and Bonino, Andrea and Miloch, Daniela and Loyola, Rafael and Nori, Javier},
	year = {2021},
	pages = {108863},
}

@article{semenchuk_philipp_relative_2022,
	title = {Relative effects of land conversion and land-use intensity on terrestrial vertebrate diversity},
	volume = {13},
	doi = {10.1038/s41467-022-28245-4},
	number = {1},
	journal = {Nature Communications},
	author = {Semenchuk, Philipp and Plutzar, Christoph and Kastner, Thomas and Matej, Sarah and Bidoglio, Giorgio and Erb, Karl Heinz and Essl, Franz and Haberl, Helmut and Wessely, Johannes and Krausmann, Fridolin and Dullinger, Stefan},
	year = {2022},
	pages = {615},
}

@article{harfoot_michael_bj_using_2021,
	title = {Using the {IUCN} {Red} {List} to map threats to terrestrial vertebrates at global scale},
	volume = {5},
	doi = {10.1038/s41559-021-01542-9},
	number = {11},
	journal = {Nature Ecology and Evolution},
	author = {Harfoot, Michael B.J. and Johnston, Alison and Balmford, Andrew and Burgess, Neil D. and Butchart, Stuart H.M. and Dias, Maria P. and Hazin, Carolina and Hilton-Taylor, Craig and Hoffmann, Michael and Isaac, Nick J.B. and Iversen, Lars L. and Outhwaite, Charlotte L. and Visconti, Piero and Geldmann, Jonas},
	year = {2021},
	pages = {1510--1519},
}

@article{diaz_sandra_pervasive_2019,
	title = {Pervasive human-driven decline of life on {Earth} points to the need for transformative change},
	volume = {366},
	doi = {10.1126/science.aax3100},
	number = {6471},
	journal = {Science},
	author = {Díaz, Sandra and Settele, Josef and Brondízio, Eduardo S. and Ngo, Hien T. and Agard, John and Arneth, Almut and Balvanera, Patricia and Brauman, Kate A. and Butchart, Stuart H.M. and Chan, Kai M.A. and Lucas, A. G. and Ichii, Kazuhito and Liu, Jianguo and Subramanian, Suneetha M. and Midgley, Guy F. and Miloslavich, Patricia and Molnár, Zsolt and Obura, David and Pfaff, Alexander and Polasky, Stephen and Purvis, Andy and Razzaque, Jona and Reyers, Belinda and Chowdhury, Rinku Roy and Shin, Yunne Jai and Visseren-Hamakers, Ingrid and Willis, Katherine J. and Zayas, Cynthia N.},
	year = {2019},
}

@incollection{dellasala_biodiversity_2018,
	address = {Oxford},
	title = {Biodiversity {Response} to {Habitat} {Loss} and {Fragmentation}},
	isbn = {978-0-12-813576-1},
	url = {https://www.sciencedirect.com/science/article/pii/B9780128096659098244},
	abstract = {Humans have altered large areas of the Earth surface, fragmenting most of the Earth's native vegetation into patches separated by a matrix of land converted to a variety of anthropogenic land-uses. This longstanding, intense, and global process of native vegetation conversion has created a social demand for scientific support for mitigating the effects of habitat loss and fragmentation on biodiversity. Here, we present key definitions and synthesize the processes underlying the effect of habitat loss and fragmentation, what we know and what is needed to advance our understanding on habitat loss and fragmentation effects, and how to mitigate them.},
	booktitle = {Encyclopedia of the {Anthropocene}},
	publisher = {Elsevier},
	author = {Pardini, R. and Nichols, E. and Püttker, T.},
	editor = {Dellasala, Dominick A. and Goldstein, Michael I.},
	year = {2018},
	doi = {https://doi.org/10.1016/B978-0-12-809665-9.09824-4},
	keywords = {Anthropogenic threats, Applied ecology, Biological diversity, Biotic homogenization, Conservation biology, Edge effects, Habitat amount, Habitat configuration, Habitat degradation, Habitat fragmentation, Habitat loss, Human disturbances, Human-modified landscapes, Island Biogeographic Theory, Land-use change, Landscape context, Landscape ecology, Landscape structure, Matrix effects, Species extinction},
	pages = {229--239},
}

@article{haddad_nick_m_habitat_2015,
	title = {Habitat fragmentation and its lasting impact on {Earth}’s ecosystems},
	volume = {1},
	doi = {10.1126/sciadv.1500052},
	number = {2},
	journal = {Science Advances},
	author = {Haddad, Nick M. and Brudvig, Lars A. and Clobert, Jean and Davies, Kendi F. and Gonzalez, Andrew and Holt, Robert D. and Lovejoy, Thomas E. and Sexton, Joseph O. and Austin, Mike P. and Collins, Cathy D. and Cook, William M. and Damschen, Ellen I. and Ewers, Robert M. and Foster, Bryan L. and Jenkins, Clinton N. and King, Andrew J. and Laurance, William F. and Levey, Douglas J. and Margules, Chris R. and Melbourne, Brett A. and Nicholls, A. O. and Orrock, John L. and Song, Dan-Xia and Townshend, John R.},
	year = {2015},
}

@article{hanski_ilkka_metapopulation_2000,
	title = {The metapopulation capacity of a fragmented landscape},
	volume = {404},
	doi = {10.1038/35008063},
	number = {6779},
	journal = {Nature},
	author = {Hanski, Ilkka and Ovaskainen, Otso},
	year = {2000},
	pages = {755--758},
}

@article{chase_jonathan_m_ecosystem_2020,
	title = {Ecosystem decay exacerbates biodiversity loss with habitat loss},
	volume = {584},
	doi = {10.1038/s41586-020-2531-2},
	number = {7820},
	journal = {Nature},
	author = {Chase, Jonathan M. and Blowes, Shane A. and Knight, Tiffany M. and Gerstner, Katharina and May, Felix},
	year = {2020},
	pages = {238--243},
}

@article{sirami_clelia_impacts_2017,
	title = {Impacts of global change on species distributions: obstacles and solutions to integrate climate and land use},
	volume = {26},
	doi = {10.1111/geb.12555},
	number = {4},
	journal = {Global Ecology and Biogeography},
	author = {Sirami, Clélia and Caplat, Paul and Popy, Simon and Clamens, Alex and Arlettaz, Raphaël and Jiguet, Frédéric and Brotons, Lluís and Martin, Jean Louis},
	year = {2017},
	pages = {385--394},
}

@article{araujo_miguel_b_standards_2019,
	title = {Standards for distribution models in biodiversity assessments},
	volume = {5},
	doi = {10.1126/sciadv.aat4858},
	number = {11},
	journal = {Science Advances},
	author = {Araújo, Miguel B. and Anderson, Robert P. and Márcia Barbosa, A. and Beale, Colin M. and Dormann, Carsten F. and Early, Regan and Garcia, Raquel A. and Guisan, Antoine and Maiorano, Luigi and Naimi, Babak and O’Hara, Robert B. and Zimmermann, Niklaus E. and Rahbek, Carsten},
	year = {2019},
	pages = {eaat4858},
}

@article{terribile_levi_carina_areas_2012,
	title = {Areas of climate stability of species ranges in the {Brazilian} {Cerrado}: disentangling uncertainties through time},
	volume = {10},
	doi = {10.4322/natcon.2012.025},
	number = {2},
	journal = {Natureza \& Conservação},
	author = {Terribile, Levi Carina and Lima-Ribeiro, Matheus Souza and Araújo, Miguel Bastos and Bizão, Nair and Collevatti, Rosane Garcia and Dobrovolski, Ricardo and Franco, Amanda Assis and Guilhaumon, François and Lima, Jacqueline de Souza and Nabout, Devanir Mitsuyuki Murakami João Carlos and Oliveira, Guilherme de and Oliveira, Leciane Karita de and Rabelo, Suelen Gonçalves and Rangel, Thiago Fernando and Simon, Lorena Mendes and Soares, Thannya Nascimento and Telles, Mariana Pires de Campos and Diniz-Filho, José Alexandre Felizola},
	year = {2012},
	pages = {152--159},
}


@article{abreujardim_neogenequaternary_2023,
	title = {Neogene–{Quaternary} tectonic, eustatic and climatic events shaped the evolution of a {South} {American} treefrog},
	volume = {50},
	issn = {0305-0270, 1365-2699},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/jbi.14578},
	doi = {10.1111/jbi.14578},
	language = {en},
	number = {5},
	urldate = {2024-03-01},
	journal = {Journal of Biogeography},
	author = {Abreu‐Jardim, Tatianne Piza Ferrari and De Lima, Natácia Evangelista and Jardim, Lucas and Maciel, Natan Medeiros and De Magalhães, Rafael Félix and Colli, Guarino Rinaldi and Haddad, Célio Fernando Baptista and Collevatti, Rosane Garcia},
	month = may,
	year = {2023},
	pages = {987--999},
}

@book{gray_geodiversity_2004,
	title = {Geodiversity: {Valuing} and {Conserving} {Abiotic} {Nature}},
	isbn = {978-0-470-84896-8},
	url = {https://books.google.com.br/books?id=rjHwAAAAMAAJ},
	publisher = {Wiley},
	author = {Gray, J.M.},
	year = {2004},
	lccn = {2004298930},
}

@article{gill_25-million-year_2015,
	title = {A 2.5-million-year perspective on coarse-filter strategies for conserving nature's stage: {Paleo} perspectives on conserving nature's stage},
	volume = {29},
	issn = {08888892},
	shorttitle = {A 2.5-million-year perspective on coarse-filter strategies for conserving nature's stage},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/cobi.12504},
	doi = {10.1111/cobi.12504},
	language = {en},
	number = {3},
	urldate = {2024-03-01},
	journal = {Conservation Biology},
	author = {Gill, Jacquelyn L. and Blois, Jessica L. and Benito, Blas and Dobrowski, Solomon and Hunter, Malcolm L. and McGuire, Jenny L.},
	month = jun,
	year = {2015},
	pages = {640--648},
}

@article{ashcroft_novel_2012,
	title = {A novel approach to quantify and locate potential microrefugia using topoclimate, climate stability, and isolation from the matrix},
	volume = {18},
	issn = {1354-1013, 1365-2486},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1365-2486.2012.02661.x},
	doi = {10.1111/j.1365-2486.2012.02661.x},
	abstract = {Abstract
            Ecologists are increasingly recognizing the conservation significance of microrefugia, but it is inherently difficult to locate these small patches with unusual climates, and hence they are also referred to as cryptic refugia. Here we introduce a new methodology to quantify and locate potential microrefugia using fine‐scale topoclimatic grids that capture extreme conditions, stable climates, and distinct differences from the surrounding matrix. We collected hourly temperature data from 150 sites in a large (200 km by 300 km) and diverse region of New South Wales, Australia, for a total of 671 days over 2 years. Sites spanned a range of habitats including coastal dune shrublands, eucalypt forests, exposed woodland ridges, sheltered rainforest gullies, upland swamps, and lowland pastures. Climate grids were interpolated using a regional regression approach based on elevation, distance to coast, canopy cover, latitude, cold‐air drainage, and topographical exposure to winds and radiation. We identified extreme temperatures on two separate climatic gradients: the 5th percentile of minimum temperatures and the 95th percentile of maximum temperatures. For each gradient, climatic stability was assessed on three different time scales (intra‐seasonal, intra‐annual and inter‐annual). Differences from the matrix were assessed using a moving window with a 5 km radius. We averaged the Z‐scores for these extreme, stable and isolated climates to identify potential locations of microrefugia. We found that our method successfully predicted the location of communities that were considered to occupy refugia, such as rainforests that have progressively contracted in distribution over the last 2.5 million years, and alpine grasslands that have contracted over the last 15 thousand years. However, the method was inherently sensitive to the gradient selected and other aspects of the modelling process. These uncertainties could be dealt with in a conservation planning context by repeating the methodology with various parameterizations and identifying areas that were consistently identified as microrefugia.},
	language = {en},
	number = {6},
	urldate = {2024-03-01},
	journal = {Global Change Biology},
	author = {Ashcroft, Michael B. and Gollan, John R. and Warton, David I. and Ramp, Daniel},
	month = jun,
	year = {2012},
	pages = {1866--1879},
	file = {Submitted Version:/home/lucasjardim/Zotero/storage/CPQYX7YW/Ashcroft et al. - 2012 - A novel approach to quantify and locate potential .pdf:application/pdf},
}

@article{tukiainen_geodiversity_2023,
	title = {Geodiversity and {Biodiversity}},
	volume = {530},
	issn = {0305-8719, 2041-4927},
	url = {https://www.lyellcollection.org/doi/10.1144/SP530-2022-107},
	doi = {10.1144/SP530-2022-107},
	abstract = {Abstract
            Non-living and living nature are inherently connected. Geodiversity, which consists of the variation in geology, soils, topography, geomorphology and hydrology, is seen as the foundation and stage for biodiversity. Underlying theory suggests that the increasing variation in the abiotic foundation creates and maintains available niche space for different organisms to thrive, resulting in higher biodiversity. Emerging scientific observations support this premise, indicating a positive influence of geodiversity on biodiversity across different environments, regions and spatial scales. Inclusion of geodiversity into biodiversity research and conservation therefore has capacity to improve our understanding of biodiversity patterns and dynamics. Current challenges that need to be overcome in this relatively new field of science are related to defining and measuring geodiversity and gaining more empirical evidence on the link between geodiversity and biodiversity. Despite these challenges, connecting these two concepts and embracing the interdisciplinary cooperation have great potential in advancing our understanding of diversity of nature and integrating geodiversity in conservation assessments across scales.},
	language = {en},
	number = {1},
	urldate = {2024-03-01},
	journal = {Geological Society, London, Special Publications},
	author = {Tukiainen, Helena and Toivanen, Maija and Maliniemi, Tuija},
	month = jul,
	year = {2023},
	pages = {31--47},
	file = {Full Text:/home/lucasjardim/Zotero/storage/P89KXDBW/Tukiainen et al. - 2023 - Geodiversity and Biodiversity.pdf:application/pdf},
}

@article{rahbek_building_2019,
	title = {Building mountain biodiversity: {Geological} and evolutionary processes},
	volume = {365},
	issn = {0036-8075, 1095-9203},
	shorttitle = {Building mountain biodiversity},
	url = {https://www.science.org/doi/10.1126/science.aax0151},
	doi = {10.1126/science.aax0151},
	abstract = {Mountain regions are unusually biodiverse, with rich aggregations of small-ranged species that form centers of endemism. Mountains play an array of roles for Earth’s biodiversity and affect neighboring lowlands through biotic interchange, changes in regional climate, and nutrient runoff. The high biodiversity of certain mountains reflects the interplay of multiple evolutionary mechanisms: enhanced speciation rates with distinct opportunities for coexistence and persistence of lineages, shaped by long-term climatic changes interacting with topographically dynamic landscapes. High diversity in most tropical mountains is tightly linked to bedrock geology—notably, areas comprising mafic and ultramafic lithologies, rock types rich in magnesium and poor in phosphate that present special requirements for plant physiology. Mountain biodiversity bears the signature of deep-time evolutionary and ecological processes, a history well worth preserving.},
	language = {en},
	number = {6458},
	urldate = {2024-03-01},
	journal = {Science},
	author = {Rahbek, Carsten and Borregaard, Michael K. and Antonelli, Alexandre and Colwell, Robert K. and Holt, Ben G. and Nogues-Bravo, David and Rasmussen, Christian M. Ø. and Richardson, Katherine and Rosing, Minik T. and Whittaker, Robert J. and Fjeldså, Jon},
	month = sep,
	year = {2019},
	pages = {1114--1119},
	file = {Full Text:/home/lucasjardim/Zotero/storage/537JTP5G/Rahbek et al. - 2019 - Building mountain biodiversity Geological and evo.pdf:application/pdf},
}

@article{janzen_why_1967,
	title = {Why {Mountain} {Passes} are {Higher} in the {Tropics}},
	volume = {101},
	issn = {0003-0147, 1537-5323},
	url = {https://www.journals.uchicago.edu/doi/10.1086/282487},
	doi = {10.1086/282487},
	language = {en},
	number = {919},
	urldate = {2024-03-01},
	journal = {The American Naturalist},
	author = {Janzen, Daniel H.},
	month = may,
	year = {1967},
	pages = {233--249},
}

@article{tukiainen_landforms_2019,
	title = {Landforms contribute to plant biodiversity at alpha, beta and gamma levels},
	volume = {46},
	issn = {0305-0270, 1365-2699},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/jbi.13569},
	doi = {10.1111/jbi.13569},
	abstract = {Abstract
            
              Aim
              Geodiversity underpins biodiversity, but the contribution of specific geofeatures or landforms has rarely been explored. In this study, we use multiple vascular plant species diversity measures on alpha, beta and gamma levels to explore the linkage between biodiversity and co‐located landforms (e.g. gullies, dunes and lake shores). We hypothesize that biodiversity will be positively related to geodiversity, which is founded on distinct landforms. Additionally, we propose that different landforms will sustain different amounts of biodiversity and that high alpha and gamma diversity values are related to landform‐driven moisture availability whereas high beta diversity relates especially to landform‐specific microtopographic variation.
            
            
              Location
              
                Rokua
                UNESCO
                Global Geopark area, Finland.
              
            
            
              Taxon
              Vascular plants.
            
            
              Methods
              We compare vascular plant species richness measures, Shannon's and Simpson's diversity indices, rarity‐weighted richness and local contribution to beta diversity at altogether three levels of biodiversity (alpha, beta and gamma) for different landforms. Landform information is compiled from aerial photos, spatial data layers and targeted field surveys. We compare results to control habitat (i.e. sites without any distinct landforms) within the study area.
            
            
              Results
              Vascular plant diversity was higher on landforms than in control habitat. There was also notable variation between species diversity of different landforms. Moisture‐rich gullies and river shores were especially diverse at all three levels, whereas aapa mires hosted most unique species composition (highest beta diversity). Beta diversity patterns were rather comparable with alpha and gamma diversity patterns, which contradict our hypothesis.
            
            
              Main conclusions
              This study quantitatively established a strong connection between terrestrial plant communities and multiple landforms. Our results highlighted the landform‐controlled variation in soil moisture, microclimate and microtopography in enhancing plant species diversity. Based on the results, we promote the inclusion of landform‐based geodiversity information in conservation management and in further biogeographical studies.},
	language = {en},
	number = {8},
	urldate = {2024-03-01},
	journal = {Journal of Biogeography},
	author = {Tukiainen, Helena and Kiuttu, Mikko and Kalliola, Risto and Alahuhta, Janne and Hjort, Jan},
	month = aug,
	year = {2019},
	pages = {1699--1710},
	file = {Accepted Version:/home/lucasjardim/Zotero/storage/ZANFULGD/Tukiainen et al. - 2019 - Landforms contribute to plant biodiversity at alph.pdf:application/pdf},
}

@article{zarnetske_towards_2019,
	title = {Towards connecting biodiversity and geodiversity across scales with satellite remote sensing},
	volume = {28},
	issn = {1466-822X, 1466-8238},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/geb.12887},
	doi = {10.1111/geb.12887},
	abstract = {Abstract
            
              Issue
              Geodiversity (i.e., the variation in Earth's abiotic processes and features) has strong effects on biodiversity patterns. However, major gaps remain in our understanding of how relationships between biodiversity and geodiversity vary over space and time. Biodiversity data are globally sparse and concentrated in particular regions. In contrast, many forms of geodiversity can be measured continuously across the globe with satellite remote sensing. Satellite remote sensing directly measures environmental variables with grain sizes as small as tens of metres and can therefore elucidate biodiversity–geodiversity relationships across scales.
            
            
              Evidence
              
                We show how one important geodiversity variable, elevation, relates to alpha, beta and gamma taxonomic diversity of trees across spatial scales. We use elevation from NASA's Shuttle Radar Topography Mission (SRTM) and
                c
                . 16,000 Forest Inventory and Analysis plots to quantify spatial scaling relationships between biodiversity and geodiversity with generalized linear models (for alpha and gamma diversity) and beta regression (for beta diversity) across five spatial grains ranging from 5 to 100 km. We illustrate different relationships depending on the form of diversity; beta and gamma diversity show the strongest relationship with variation in elevation.
              
            
            
              Conclusion
              With the onset of climate change, it is more important than ever to examine geodiversity for its potential to foster biodiversity. Widely available satellite remotely sensed geodiversity data offer an important and expanding suite of measurements for understanding and predicting changes in different forms of biodiversity across scales. Interdisciplinary research teams spanning biodiversity, geoscience and remote sensing are well poised to advance understanding of biodiversity–geodiversity relationships across scales and guide the conservation of nature.},
	language = {en},
	number = {5},
	urldate = {2024-03-01},
	journal = {Global Ecology and Biogeography},
	author = {Zarnetske, Phoebe L. and Read, Quentin D. and Record, Sydne and Gaddis, Keith D. and Pau, Stephanie and Hobi, Martina L. and Malone, Sparkle L. and Costanza, Jennifer and M. Dahlin, Kyla and Latimer, Andrew M. and Wilson, Adam M. and Grady, John M. and Ollinger, Scott V. and Finley, Andrew O.},
	editor = {Gillespie, Thomas},
	month = may,
	year = {2019},
	pages = {548--556},
	file = {Full Text:/home/lucasjardim/Zotero/storage/3L7XBNU2/Zarnetske et al. - 2019 - Towards connecting biodiversity and geodiversity a.pdf:application/pdf},
}

@incollection{cavender-bares_applying_2020,
	address = {Cham},
	title = {Applying {Remote} {Sensing} to {Biodiversity} {Science}},
	isbn = {978-3-030-33156-6 978-3-030-33157-3},
	url = {http://link.springer.com/10.1007/978-3-030-33157-3_2},
	abstract = {Abstract
            Biodiversity is organized hierarchically from individuals to populations to major lineages in the tree of life. This hierarchical structure has consequences for remote sensing of plant phenotypes and leads to the expectation that more distantly related plants will be more spectrally distinct. Applying remote sensing to understand ecological processes from biodiversity patterns builds on prior efforts that integrate functional and phylogenetic information of organisms with their environmental distributions to discern assembly processes and the rules that govern species distributions. Spectral diversity metrics critical to detecting biodiversity patterns expand on the many metrics for quantifying multiple dimensions of biodiversity—taxonomic, phylogenetic, and functional—and can be applied at local (alpha diversity) to regional (gamma diversity) scales to examine variation among communities (beta diversity). Remote-sensing technologies stand to illuminate the nature of biodiversity-ecosystem function relationships and ecosystem service trade-offs over large spatial extents and to estimate their uncertainties. Such advances will improve our capacity to manage natural resources in the Anthropocene.},
	language = {en},
	urldate = {2024-03-01},
	booktitle = {Remote {Sensing} of {Plant} {Biodiversity}},
	publisher = {Springer International Publishing},
	author = {Cavender-Bares, Jeannine and Schweiger, Anna K. and Pinto-Ledezma, Jesús N. and Meireles, Jose Eduardo},
	editor = {Cavender-Bares, Jeannine and Gamon, John A. and Townsend, Philip A.},
	year = {2020},
	doi = {10.1007/978-3-030-33157-3_2},
	pages = {13--42},
	file = {Full Text:/home/lucasjardim/Zotero/storage/VFZCNFBM/Cavender-Bares et al. - 2020 - Applying Remote Sensing to Biodiversity Science.pdf:application/pdf},
}

@article{antonelli_geological_2018,
	title = {Geological and climatic influences on mountain biodiversity},
	volume = {11},
	issn = {1752-0894, 1752-0908},
	url = {https://www.nature.com/articles/s41561-018-0236-z},
	doi = {10.1038/s41561-018-0236-z},
	language = {en},
	number = {10},
	urldate = {2024-03-01},
	journal = {Nature Geoscience},
	author = {Antonelli, Alexandre and Kissling, W. Daniel and Flantua, Suzette G. A. and Bermúdez, Mauricio A. and Mulch, Andreas and Muellner-Riehl, Alexandra N. and Kreft, Holger and Linder, H. Peter and Badgley, Catherine and Fjeldså, Jon and Fritz, Susanne A. and Rahbek, Carsten and Herman, Frédéric and Hooghiemstra, Henry and Hoorn, Carina},
	month = oct,
	year = {2018},
	pages = {718--725},
	file = {Full Text:/home/lucasjardim/Zotero/storage/K6IRT559/Antonelli et al. - 2018 - Geological and climatic influences on mountain bio.pdf:application/pdf},
}

@article{vernham_understanding_2023,
	title = {Understanding trait diversity: the role of geodiversity},
	volume = {38},
	issn = {01695347},
	shorttitle = {Understanding trait diversity},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0169534723000393},
	doi = {10.1016/j.tree.2023.02.010},
	language = {en},
	number = {8},
	urldate = {2024-03-01},
	journal = {Trends in Ecology \& Evolution},
	author = {Vernham, Grant and Bailey, Joseph J. and Chase, Jonathan M. and Hjort, Jan and Field, Richard and Schrodt, Franziska},
	month = aug,
	year = {2023},
	pages = {736--748},
}

@article{tischendorf_usage_2000,
	title = {On the usage and measurement of landscape connectivity},
	volume = {90},
	issn = {0030-1299, 1600-0706},
	url = {https://onlinelibrary.wiley.com/doi/10.1034/j.1600-0706.2000.900102.x},
	doi = {10.1034/j.1600-0706.2000.900102.x},
	abstract = {This paper examines the usage and measurement of “landscape connectivity” in 33 recent studies. Connectivity is defined as the degree to which a landscape facilitates or impedes movement of organisms among resource patches. However, connectivity is actually used in a variety of ways in the literature. This has led to confusion and lack of clarity related to (1) function vs structure, (2) patch isolation vs landscape connectivity and, (3) corridors vs connectivity. We suggest the term connectivity should be reserved for its original purpose. We highlight nine studies; these include modeling studies that actually measured connectivity in accordance with the definition, and empirical studies that measured key components of connectivity. We found that measurements of connectivity provide results that can be interpreted as recommending habitat fragmentation to enhance landscape connectivity. We discuss reasons for this misleading conclusion, and suggest a new way of quantifying connectivity, which avoids this problem. We also recommend a method for reducing sampling intensity in landscape‐scale empirical studies of connectivity.},
	language = {en},
	number = {1},
	urldate = {2024-03-01},
	journal = {Oikos},
	author = {Tischendorf, Lutz and Fahrig, Lenore},
	month = jul,
	year = {2000},
	pages = {7--19},
}

@article{fine_ecological_2015,
	title = {Ecological and {Evolutionary} {Drivers} of {Geographic} {Variation} in {Species} {Diversity}},
	volume = {46},
	issn = {1543-592X, 1545-2069},
	url = {https://www.annualreviews.org/doi/10.1146/annurev-ecolsys-112414-054102},
	doi = {10.1146/annurev-ecolsys-112414-054102},
	abstract = {Recent studies have generated an explosion of phylogenetic and biogeographic data and have provided new tools to investigate the processes driving large-scale gradients in species diversity. Fossils and phylogenetic studies of plants and animals demonstrate that tropical regions are the source for almost all groups of organisms, and these groups are composed of a mixture of ancient and recently derived lineages. These findings are consistent with the hypothesis that the large extent of tropical environments during the past 10–50 million years, together with greater climatic stability, has promoted speciation and reduced extinction rates. Energy availability appears to only indirectly contribute to global patterns of species diversity, especially considering how some marine diversity gradients can be completely decoupled from temperature and productivity gradients. Instead, climate stability and time–integrated area together determine the baselines of both terrestrial and marine global diversity patterns. Biotic interactions likely augment diversification and coexistence in the tropics.},
	language = {en},
	number = {1},
	urldate = {2024-03-01},
	journal = {Annual Review of Ecology, Evolution, and Systematics},
	author = {Fine, Paul V.A.},
	month = dec,
	year = {2015},
	pages = {369--392},
}