importing failed

[aminemosbah]

hi i get this when trying to run the tutorial, what to we need to install rdkit in google collab ? thinks
ImportError Traceback (most recent call last)
in ()
1 import pandas as pd
----> 2 from rdkit import Chem
3 from rdkit.Chem import PandasTools
4 from rdkit.Chem.Draw import IPythonConsole
5

ImportError: cannot import name 'Chem'

---

NOTE: If your import is failing due to a missing package, you can
manually install dependencies using either !pip or !apt.

To view examples of installing some common dependencies, click the
"Open Examples" button below.

[jw-feng]

Try installing RDKit with the following: !wget -c https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh !chmod +x Miniconda3-latest-Linux-x86_64.sh !bash ./Miniconda3-latest-Linux-x86_64.sh -b -f -p /usr/local !conda install -q -y -c conda-forge rdkit # Then append rdkit path to current python system path. import sys sys.path.append('/usr/local/lib/python3.7/site-packages/')

…

On Sat, Feb 22, 2020 at 4:23 AM aminemosbah ***@***.***> wrote: hi i get this when trying to run the tutorial, what to we need to install rdkit in google collab ? thinks ImportError Traceback (most recent call last) in () 1 import pandas as pd ----> 2 from rdkit import Chem 3 from rdkit.Chem import PandasTools 4 from rdkit.Chem.Draw import IPythonConsole 5 ImportError: cannot import name 'Chem' ------------------------------ NOTE: If your import is failing due to a missing package, you can manually install dependencies using either !pip or !apt. To view examples of installing some common dependencies, click the "Open Examples" button below. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#9?email_source=notifications&email_token=ADVE4OU6BOIMDJQCYSZGL5TREEKMRA5CNFSM4KZRDKH2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IPPIAXQ>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADVE4OVTXAIRA62ZNEF5AL3REEKMRANCNFSM4KZRDKHQ> .

[aminemosbah]

Are you sure this is the way to go with google collab ? I m trying to run rdkit on the cloud not on the local device

[jw-feng]

Yes, see this example that was posted on the Rdkit discussion forum. https://colab.research.google.com/drive/1nQPmdEbYQgVsFr7c44yRd3wpXPEsJar3 This is what worked for me. I tried installing RDKit with apt-get on colab but that resulted in an error trying to import Chem. JW

…

On Feb 23, 2020, at 4:46 AM, aminemosbah ***@***.***> wrote:  Are you sure this is the way to go with google collab ? I m trying to run rdkit on the cloud not on the local device — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

[aminemosbah]

Thanks that’s fine Get Outlook for iOS<https://aka.ms/o0ukef>

________________________________ From: JW Feng <[email protected]> Sent: Sunday, February 23, 2020 5:42:59 PM To: rdkit/rdkit-tutorials <[email protected]> Cc: aminemosbah <[email protected]>; Author <[email protected]> Subject: Re: [rdkit/rdkit-tutorials] importing failed (#9) Yes, see this example that was posted on the Rdkit discussion forum. https://colab.research.google.com/drive/1nQPmdEbYQgVsFr7c44yRd3wpXPEsJar3 This is what worked for me. I tried installing RDKit with apt-get on colab but that resulted in an error trying to import Chem. JW

On Feb 23, 2020, at 4:46 AM, aminemosbah ***@***.***> wrote:  Are you sure this is the way to go with google collab ? I m trying to run rdkit on the cloud not on the local device — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#9?email_source=notifications&email_token=AJ6TEN62NXAL45RCP2B6C2LREKRRHA5CNFSM4KZRDKH2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEMWAXEQ#issuecomment-590089106>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AJ6TEN5CDKEK664ZP44FL6TREKRRHANCNFSM4KZRDKHQ>.