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KMC froze at Stage 1: 2% #242

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zhangrengang opened this issue Sep 30, 2024 · 0 comments

zhangrengang commented Sep 30, 2024

When I count kmers for a large BAM file (586 Gb), KMC froze with CPU% = 0. The following is the log:

+ kmc -fbam -k19 -t32 -m256 -ci1 -cs100000000 -cx1000000000 @seq.list BPS02_19 /dev/shm/kmc3041468.BPS02_19
***********************************************************************************************************************************************************************************
Stage 1: 2%

The KMC version: ver. 3.2.4 (2024-02-09)

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