DESCRIPTION

Package: MsIO
Title: Serializing and restoring/importing mass spectrometry data objects
Version: 0.0.8
Authors@R:
    c(person(given = "Johannes", family = "Rainer",
             email = "Johannes.Rainer@eurac.edu",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6977-7147")),
      person(given = "Philippine", family = "Louail",
             email = "philippine.louail@eurac.edu",
	     role = "aut",
	     comment = c(ORCID = "0009-0007-5429-6846")),
      person(given = "Laurent", family = "Gatto",
             email = "laurent.gatto@uclouvain.be",
	     role = "ctb",
	     comment = c(ORCID = "0000-0002-1520-2268")))
Description: The serialization mechanism of R allows to save and load R data
             objects in a binary format, that can however not be read by other
	     programming languages or software. The MsIO package supports
	     serializing and restoring or importing mass spectrometry data
	     objects to and from language agnostic file formats. A variety
	     of different file types, including HDF5 and JSON-based formats
	     defined by the Bioconductor *alabaster* package are supported. The
	     file type can be defined and configured through a second argument
	     `param` of the export/import methods.
Depends:
    R (>= 4.2.0)
Imports:
    jsonlite,
    methods,
    MsCoreUtils (>= 1.17.1),
    S4Vectors,
    ProtGenerics,
    alabaster.base
Suggests:
    BiocStyle (>= 2.5.19),
    faahKO,
    knitr (>= 1.1.0),
    MsExperiment,
    msdata,
    rmarkdown,
    roxygen2,
    Spectra (>= 1.15.6),
    testthat,
    xcms,
    alabaster.se,
    alabaster.matrix,
    MsBackendMetaboLights (>= 0.99.1),
    BiocFileCache,
    QFeatures
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsIO/issues
URL: https://github.com/RforMassSpectrometry/MsIO
biocViews: Infrastructure, MassSpectrometry, Metabolomics, DataImport, Proteomics
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.2
Collate:
    'PlainTextParam.R'
    'AlabasterParam.R'
    'AllGenerics.R'
    'MetaboLightsParam.R'
    'MsBackend.R'
    'MsBackendMetaboLights.R'
    'MsBackendMzR.R'
    'MsExperiment.R'
    'MsExperimentFiles.R'
    'Spectra.R'
    'mzTabParam.R'
    'XcmsExperiment.R'
    'utils.R'
    'zzz.R'