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csamtools error #15

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GoogleCodeExporter opened this issue Dec 28, 2015 · 1 comment

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auto-migrated Priority-Medium Type-Defect

GoogleCodeExporter commented Dec 28, 2015

Hello,

I am getting an error message when running the indexer:

Traceback (most recent call last):
  File "bin/chimerascan_index.py", line 32, in <module>
    import chimerascan.pysam as pysam
  File "/home/carmenise/chimerascan-0.4.5/chimerascan/pysam/__init__.py", line 1, in <module>
    from csamtools import *
ImportError: No module named csamtools

What should I do to fix it ?

Thank you

Original issue reported on code.google.com by [email protected] on 10 Jun 2013 at 1:06

The text was updated successfully, but these errors were encountered:

GoogleCodeExporter added Priority-Medium auto-migrated Type-Defect labels

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GoogleCodeExporter commented Dec 28, 2015

I got the same problem before, 
and I found that:

PYTHON_DIR/site-packages/chimerascan/pysam/
-rwxr----- 1 root root 1808412 2014-05-05 18:42 csamtools.so
-rwxr----- 1 root root  580024 2014-05-05 18:42 ctabix.so

This means that we need the 'root' permission to import these modules, 
or just let them 'readable' by all users.

Original comment by [email protected] on 6 May 2014 at 6:18

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