NEWS.md

GNapi 0.3-8 (2023-07-26)

Minor changes

• Updated URL for GeneNetwork API

• Remove an example from the vignette that no longer works: "get the information for a specific group," list_groups("rat", "HSNIH-Palmer")

GNapi 0.3-7 (2022-10-25)

Bug fixes

• run_gemma() and run_rqtl() are working again.

• Trapped additional errors by looking for Error: in title of output. (in new internal function error_in_title())

GNapi 0.3-6 (2022-09-26)

Bug fixes

• get_geno() is working again

• info_pheno() can no longer get a list of traits within a group

• list_groups() no longer takes an individual group name

GNapi 0.3-4 (2021-11-17)

Bug fixes

• Small change in query_gn() to change NULL output to NA.

GNapi 0.3-3 (2020-12-06)

Minor changes

• Fix a typo in an argument option in run_rqtl().

GNapi 0.3-2 (2019-06-10)

Major changes

• Switched to the proper API url, gn2.genenetwork.org/api/pre_v1

Minor changes

• Fixed run_gemma(), run_rqtl(), and run_correlations() as genenetwork API changed (now giving JSON output)

• list_groups() can be used to get information for a specific group.

• list_datasets() can be used to get information for a specific dataset.

• Remove info_dataset() and info_datasets(); for both can be just use list_datasets().

• Include limit argument for info_pheno().

Bug fixes

• list_groups() was messed up when a species was provided.

• Fix get_geno() so it returns NULL if the result has no data.

GNapi 0.2-2 (2019-05-29)

Major changes

• Complete re-write due to complete re-write of the API