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TIGER is fantastic for identifying ICEs in my genome assemblies, thank you for developing it.
I was wondering if it would be possible to use a preexisting annotated genome as input rather than having TIGER run prokka on the fna file? I.e. use a gff or gbk file as input to TIGER rather than fna. This would save analysis time and also make it easier to relate integrase genes to specific locus tags etc.
My genome annotations are done with bakta (uses PRODIGAL) and/or prokka already anyway. Thanks!
The text was updated successfully, but these errors were encountered:
TIGER is fantastic for identifying ICEs in my genome assemblies, thank you for developing it.
I was wondering if it would be possible to use a preexisting annotated genome as input rather than having TIGER run prokka on the fna file? I.e. use a gff or gbk file as input to TIGER rather than fna. This would save analysis time and also make it easier to relate integrase genes to specific locus tags etc.
My genome annotations are done with bakta (uses PRODIGAL) and/or prokka already anyway. Thanks!
The text was updated successfully, but these errors were encountered: