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even the number of epithelial and malignant cell in scRNA and scRNA_subset is the same:
result of exp1 and exp2 as follow :
i wonder that why thethe averageexpression result of "Malignant_cell","Epithelial_cells" in exp2 is different from exp1?please who know this ,i know is simple but reslut is uncredeble
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Idents(scRNA)="combined_celltype_add.malignant.normal",
exp1=AverageExpression(scRNA)
scRNA_subset=subset(scRNA,combined_celltype_add.malignant.normal%in%c("Malignant_cell","Epithelial_cells"))
Idents(scRNA_subset)="combined_celltype_add.malignant.normal"
exp2=AverageExpression(scRNA_subset)
even the number of epithelial and malignant cell in scRNA and scRNA_subset is the same:
result of exp1 and exp2 as follow :
i wonder that why thethe averageexpression result of "Malignant_cell","Epithelial_cells" in exp2 is different from exp1?please who know this ,i know is simple but reslut is uncredeble
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