.clang-format

# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
# SPDX-License-Identifier: CC0-1.0

# Format all files in include/test folder, including std module, excluding contrib module
# find . \( -path "./include/seqan3/std/*" -iname "*.cpp" -or -iname "*.hpp" \) -and -not -path "./submodules/*" -and -not -path "./build/*" -and -not -path "./include/seqan3/contrib/*" | xargs clang-format-18 --style=file -i
# Staged files: git diff --name-only HEAD --diff-filter=ACMRT | grep -E "(\.cpp|\.hpp)$" | xargs clang-format-18 --style=file -i

---
Language:        Cpp
AccessModifierOffset: -4
AlignAfterOpenBracket: Align
AlignArrayOfStructures: None
AlignConsecutiveAssignments:
  Enabled:         false
  AcrossEmptyLines: false
  AcrossComments:  false
  AlignCompound:   false
  AlignFunctionPointers: false
  PadOperators:    true
AlignConsecutiveBitFields:
  Enabled:         false
  AcrossEmptyLines: false
  AcrossComments:  false
  AlignCompound:   false
  AlignFunctionPointers: false
  PadOperators:    true
AlignConsecutiveDeclarations:
  Enabled:         false
  AcrossEmptyLines: false
  AcrossComments:  false
  AlignCompound:   false
  AlignFunctionPointers: false
  PadOperators:    true
AlignConsecutiveMacros:
  Enabled:         false
  AcrossEmptyLines: false
  AcrossComments:  false
  AlignCompound:   false
  AlignFunctionPointers: false
  PadOperators:    true
AlignConsecutiveShortCaseStatements:
  Enabled:         false
  AcrossEmptyLines: false
  AcrossComments:  false
  AlignCaseColons: false
AlignEscapedNewlines: Right
AlignOperands:   AlignAfterOperator
AlignTrailingComments:
  Kind:            Always
  OverEmptyLines:  0
AllowAllArgumentsOnNextLine: false
AllowAllParametersOfDeclarationOnNextLine: false
AllowBreakBeforeNoexceptSpecifier: OnlyWithParen
AllowShortBlocksOnASingleLine: Empty
AllowShortCaseLabelsOnASingleLine: false
AllowShortCompoundRequirementOnASingleLine: true
AllowShortEnumsOnASingleLine: true
AllowShortFunctionsOnASingleLine: None
AllowShortIfStatementsOnASingleLine: Never
AllowShortLambdasOnASingleLine: Empty
AllowShortLoopsOnASingleLine: false
AlwaysBreakAfterDefinitionReturnType: None
AlwaysBreakAfterReturnType: None
AlwaysBreakBeforeMultilineStrings: false
AlwaysBreakTemplateDeclarations: Yes
AttributeMacros:
  - __capability
BinPackArguments: false
BinPackParameters: false
BitFieldColonSpacing: Both
BraceWrapping:
  AfterCaseLabel:  true
  AfterClass:      true
  AfterControlStatement: Always
  AfterEnum:       true
  AfterExternBlock: true
  AfterFunction:   true
  AfterNamespace:  true
  AfterObjCDeclaration: false
  AfterStruct:     true
  AfterUnion:      true
  BeforeCatch:     true
  BeforeElse:      true
  BeforeLambdaBody: true
  BeforeWhile:     true
  IndentBraces:    false
  SplitEmptyFunction: false
  SplitEmptyRecord: false
  SplitEmptyNamespace: false
BreakAdjacentStringLiterals: true
BreakAfterAttributes: Leave
BreakAfterJavaFieldAnnotations: false
BreakArrays:     true
BreakBeforeBinaryOperators: NonAssignment
BreakBeforeConceptDeclarations: Always
BreakBeforeBraces: Custom
BreakBeforeInlineASMColon: OnlyMultiline
BreakBeforeTernaryOperators: true
BreakConstructorInitializers: AfterColon
BreakInheritanceList: AfterColon
BreakStringLiterals: true
ColumnLimit:     120
CommentPragmas:  '^ IWYU pragma:'
CompactNamespaces: false
ConstructorInitializerIndentWidth: 4
ContinuationIndentWidth: 4
Cpp11BracedListStyle: true
DerivePointerAlignment: false
DisableFormat:   false
EmptyLineAfterAccessModifier: Never
EmptyLineBeforeAccessModifier: Always
ExperimentalAutoDetectBinPacking: false
FixNamespaceComments: true
ForEachMacros:
  - foreach
  - Q_FOREACH
  - BOOST_FOREACH
IfMacros:
  - KJ_IF_MAYBE
IncludeBlocks:   Regroup
IncludeCategories:
  - Regex:           '(<gtest/.*|<benchmark/.*)'
    Priority:        1
    SortPriority:    0
    CaseSensitive:   false
  - Regex:           '(<[[:alnum:]._]+>|<seqan3/std/.*>)'
    Priority:        2
    SortPriority:    0
    CaseSensitive:   false
  - Regex:           '<sdsl/'
    Priority:        3
    SortPriority:    0
    CaseSensitive:   false
  - Regex:           '<seqan3/'
    Priority:        4
    SortPriority:    0
    CaseSensitive:   false
  - Regex:           '<cereal/'
    Priority:        5
    SortPriority:    0
    CaseSensitive:   false
  - Regex:           '<lemon/'
    Priority:        6
    SortPriority:    0
    CaseSensitive:   false
  - Regex:           '.*'
    Priority:        7
    SortPriority:    0
    CaseSensitive:   false
IncludeIsMainRegex: '(Test)?$'
IncludeIsMainSourceRegex: ''
IndentAccessModifiers: false
IndentCaseBlocks: false
IndentCaseLabels: false
IndentExternBlock: AfterExternBlock
IndentGotoLabels: true
IndentPPDirectives: AfterHash
IndentRequiresClause: true
IndentWidth:     4
IndentWrappedFunctionNames: false
InsertBraces:    false
InsertNewlineAtEOF: false
InsertTrailingCommas: None
IntegerLiteralSeparator:
  Binary:          4
  BinaryMinDigits: 0
  Decimal:         3
  DecimalMinDigits: 7
  Hex:             2
  HexMinDigits:    4
JavaScriptQuotes: Leave
JavaScriptWrapImports: true
KeepEmptyLinesAtTheStartOfBlocks: true
KeepEmptyLinesAtEOF: false
LambdaBodyIndentation: Signature
LineEnding:      DeriveLF
MacroBlockBegin: ''
MacroBlockEnd:   ''
MaxEmptyLinesToKeep: 1
NamespaceIndentation: None
ObjCBinPackProtocolList: Never
ObjCBlockIndentWidth: 2
ObjCBreakBeforeNestedBlockParam: true
ObjCSpaceAfterProperty: false
ObjCSpaceBeforeProtocolList: true
PackConstructorInitializers: CurrentLine
PenaltyBreakAssignment: 2
PenaltyBreakBeforeFirstCallParameter: 19
PenaltyBreakComment: 300
PenaltyBreakFirstLessLess: 120
PenaltyBreakOpenParenthesis: 0
PenaltyBreakScopeResolution: 500
PenaltyBreakString: 1000
PenaltyBreakTemplateDeclaration: 10
PenaltyExcessCharacter: 1000000
PenaltyIndentedWhitespace: 0
PenaltyReturnTypeOnItsOwnLine: 60
PointerAlignment: Middle
PPIndentWidth:   -1
QualifierAlignment: Custom
QualifierOrder:
  - static
  - inline
  - constexpr
  - volatile
  - type
  - const
ReferenceAlignment: Pointer
ReflowComments:  false
RemoveBracesLLVM: false
RemoveParentheses: Leave
RemoveSemicolon: false
RequiresClausePosition: OwnLine
RequiresExpressionIndentation: OuterScope
SeparateDefinitionBlocks: Leave
ShortNamespaceLines: 1
SkipMacroDefinitionBody: false
SortIncludes:    CaseSensitive
SortJavaStaticImport: Before
SortUsingDeclarations: LexicographicNumeric
SpaceAfterCStyleCast: false
SpaceAfterLogicalNot: false
SpaceAfterTemplateKeyword: true
SpaceAroundPointerQualifiers: Default
SpaceBeforeAssignmentOperators: true
SpaceBeforeCaseColon: false
SpaceBeforeCpp11BracedList: false
SpaceBeforeCtorInitializerColon: true
SpaceBeforeInheritanceColon: true
SpaceBeforeJsonColon: false
SpaceBeforeParens: Custom
SpaceBeforeParensOptions:
  AfterControlStatements: true
  AfterForeachMacros: true
  AfterFunctionDefinitionName: false
  AfterFunctionDeclarationName: false
  AfterIfMacros:   true
  AfterOverloadedOperator: false
  AfterPlacementOperator: true
  AfterRequiresInClause: true
  AfterRequiresInExpression: true
  BeforeNonEmptyParentheses: false
SpaceBeforeRangeBasedForLoopColon: true
SpaceBeforeSquareBrackets: false
SpaceInEmptyBlock: false
SpacesBeforeTrailingComments: 1
SpacesInAngles:  Never
SpacesInContainerLiterals: false
SpacesInLineCommentPrefix:
  Minimum:         1
  Maximum:         -1
SpacesInParens:  Never
SpacesInParensOptions:
  InCStyleCasts:   false
  InConditionalStatements: false
  InEmptyParentheses: false
  Other:           false
SpacesInSquareBrackets: false
Standard:        c++20
StatementAttributeLikeMacros:
  - Q_EMIT
StatementMacros:
  - Q_UNUSED
  - QT_REQUIRE_VERSION
TabWidth:        4
UseTab:          Never
VerilogBreakBetweenInstancePorts: true
WhitespaceSensitiveMacros:
  - SEQAN3_DEPRECATED_HEADER
  - CF_SWIFT_NAME
  - NS_SWIFT_NAME
  - PP_STRINGIZE
  - STRINGIZE
  - SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY_START
  - SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY_STOP
  - reduction
...