diff --git a/.clang-format b/.clang-format index 405b0c11a4..d5c73ee6e5 100644 --- a/.clang-format +++ b/.clang-format @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + # Format all files in include folder, including std module, excluding contrib module # find . \( -path "./include/seqan3/std/*" -or -iname "*.hpp" \) -and -not -path "./submodules/*" -and -not -path "./build/*" -and -not -path "./include/seqan3/contrib/*" -and -not -path "./test/*" | xargs clang-format-15 --style=file -i --- diff --git a/.cmake-format.yaml b/.cmake-format.yaml index 80a35b9220..d0040eb81f 100644 --- a/.cmake-format.yaml +++ b/.cmake-format.yaml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + _seqan3_cmake_format_documentation_only: install: command: diff --git a/.codecov.yml b/.codecov.yml index 94db515ae3..2b56c5c224 100644 --- a/.codecov.yml +++ b/.codecov.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + # See https://docs.codecov.io/docs/codecovyml-reference codecov: require_ci_to_pass: no # codecov reports its results independent of whether CI passed diff --git a/.editorconfig b/.editorconfig index 9bbc07ae5b..8752b333c2 100644 --- a/.editorconfig +++ b/.editorconfig @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + # https://EditorConfig.org # top-most EditorConfig file diff --git a/.github/ISSUE_TEMPLATE/bug_report.yml b/.github/ISSUE_TEMPLATE/bug_report.yml index ff9d3ac975..997b0c5c88 100644 --- a/.github/ISSUE_TEMPLATE/bug_report.yml +++ b/.github/ISSUE_TEMPLATE/bug_report.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: 🐞 Bug report description: Create a report to help us improve SeqAn3. labels: [bug] diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml index 1f6fb0fb5d..70da498adc 100644 --- a/.github/ISSUE_TEMPLATE/config.yml +++ b/.github/ISSUE_TEMPLATE/config.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + blank_issues_enabled: true contact_links: - name: Questions and Answers diff --git a/.github/ISSUE_TEMPLATE/cron_comment_template.md.license b/.github/ISSUE_TEMPLATE/cron_comment_template.md.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/cron_comment_template.md.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/.github/ISSUE_TEMPLATE/feature_request.md.license b/.github/ISSUE_TEMPLATE/feature_request.md.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/feature_request.md.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/.github/ISSUE_TEMPLATE/question.md.license b/.github/ISSUE_TEMPLATE/question.md.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/question.md.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/.github/ISSUE_TEMPLATE/release-checklist.md.license b/.github/ISSUE_TEMPLATE/release-checklist.md.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/release-checklist.md.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/.github/ISSUE_TEMPLATE/task.md.license b/.github/ISSUE_TEMPLATE/task.md.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/task.md.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/.github/dependabot.yml b/.github/dependabot.yml index dcbcb6507f..b0755ab59a 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 +# # https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates version: 2 diff --git a/.github/pull_request_template.md.license b/.github/pull_request_template.md.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/.github/pull_request_template.md.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/.github/workflows/README.md b/.github/workflows/README.md index ea594ff1dc..17cdf55ec3 100644 --- a/.github/workflows/README.md +++ b/.github/workflows/README.md @@ -1,3 +1,9 @@ + + # Continuous on Pull Request ## ci_cmake.yml diff --git a/.github/workflows/ci_cmake.yml b/.github/workflows/ci_cmake.yml index b879a580f0..f2911721e2 100644 --- a/.github/workflows/ci_cmake.yml +++ b/.github/workflows/ci_cmake.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: CMake on: diff --git a/.github/workflows/ci_coverage.yml b/.github/workflows/ci_coverage.yml index d69a98a0ff..4b5219eba0 100644 --- a/.github/workflows/ci_coverage.yml +++ b/.github/workflows/ci_coverage.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Coverage on: diff --git a/.github/workflows/ci_documentation.yml b/.github/workflows/ci_documentation.yml index 85e5567325..096a54047c 100644 --- a/.github/workflows/ci_documentation.yml +++ b/.github/workflows/ci_documentation.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Documentation on: diff --git a/.github/workflows/ci_lint.yml b/.github/workflows/ci_lint.yml index 40e62ac5cf..6f8983e3b1 100644 --- a/.github/workflows/ci_lint.yml +++ b/.github/workflows/ci_lint.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Lint on: diff --git a/.github/workflows/ci_linux.yml b/.github/workflows/ci_linux.yml index 38d11bc3f7..4d13bde76d 100644 --- a/.github/workflows/ci_linux.yml +++ b/.github/workflows/ci_linux.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Unit Linux on: diff --git a/.github/workflows/ci_macos.yml b/.github/workflows/ci_macos.yml index dca041f2b1..04e89b3e13 100644 --- a/.github/workflows/ci_macos.yml +++ b/.github/workflows/ci_macos.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Unit macOS on: diff --git a/.github/workflows/ci_misc.yml b/.github/workflows/ci_misc.yml index ac18df6295..f28871cb07 100644 --- a/.github/workflows/ci_misc.yml +++ b/.github/workflows/ci_misc.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Linux on: diff --git a/.github/workflows/cron_api.yml b/.github/workflows/cron_api.yml index 383e948b82..6c84a55bdb 100644 --- a/.github/workflows/cron_api.yml +++ b/.github/workflows/cron_api.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: API-Stability on: diff --git a/.github/workflows/cron_avx2.yml b/.github/workflows/cron_avx2.yml index 4f82a0ab9c..157866ceaa 100644 --- a/.github/workflows/cron_avx2.yml +++ b/.github/workflows/cron_avx2.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: AVX2 on: diff --git a/.github/workflows/cron_latest_libraries.yml b/.github/workflows/cron_latest_libraries.yml index 459bc3243f..75825ac32c 100644 --- a/.github/workflows/cron_latest_libraries.yml +++ b/.github/workflows/cron_latest_libraries.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Latest Libraries on: diff --git a/.github/workflows/deploy_documentation.yaml b/.github/workflows/deploy_documentation.yaml index 47913bd2f2..4d739b9720 100644 --- a/.github/workflows/deploy_documentation.yaml +++ b/.github/workflows/deploy_documentation.yaml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Deploy documentation (https://docs.seqan.de/) on: diff --git a/.github/workflows/hide_comments.yml b/.github/workflows/hide_comments.yml index 6e39031d7e..75066fe37d 100644 --- a/.github/workflows/hide_comments.yml +++ b/.github/workflows/hide_comments.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Hide bot comments on: diff --git a/.github/workflows/license_check.yaml b/.github/workflows/license_check.yaml new file mode 100644 index 0000000000..52c6b55860 --- /dev/null +++ b/.github/workflows/license_check.yaml @@ -0,0 +1,22 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 +name: REUSE Compliance Check + +on: + push: + branches: + - 'main' + - 'master' + pull_request: + workflow_dispatch: + +jobs: + license_check: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - name: REUSE Compliance Check + uses: fsfe/reuse-action@v2 + with: + args: --suppress-deprecation lint diff --git a/.github/workflows/ram_usage.yml b/.github/workflows/ram_usage.yml index 7cb268ed97..7960260c0a 100644 --- a/.github/workflows/ram_usage.yml +++ b/.github/workflows/ram_usage.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: RAM-Usage on: diff --git a/.github/workflows/scripts/README.md b/.github/workflows/scripts/README.md index 4f4cd91502..94c116e620 100644 --- a/.github/workflows/scripts/README.md +++ b/.github/workflows/scripts/README.md @@ -1,3 +1,9 @@ + + ## g++_ram.sh `VERSION` needs to be replaced with the gcc version. When `DO_TIME` is `0`, this is just a wrapper for gcc that does diff --git a/.github/workflows/scripts/g++_ram.sh b/.github/workflows/scripts/g++_ram.sh index d2db8126b3..1b5316a55d 100644 --- a/.github/workflows/scripts/g++_ram.sh +++ b/.github/workflows/scripts/g++_ram.sh @@ -1,4 +1,9 @@ #!/usr/bin/env bash + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + GCC="/usr/bin/g++-VERSION" DO_TIME=0 diff --git a/.github/workflows/scripts/gcov.sh b/.github/workflows/scripts/gcov.sh index 9e38db66a9..f28434d435 100755 --- a/.github/workflows/scripts/gcov.sh +++ b/.github/workflows/scripts/gcov.sh @@ -1,5 +1,10 @@ #!/usr/bin/env bash +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + + args=${@/--branch-counts/""} args=${args/--branch-probabilities/""} diff --git a/.github/workflows/scripts/process_compiler_error_log.py b/.github/workflows/scripts/process_compiler_error_log.py index fd939fdb1e..486881447d 100644 --- a/.github/workflows/scripts/process_compiler_error_log.py +++ b/.github/workflows/scripts/process_compiler_error_log.py @@ -1,10 +1,8 @@ #!/usr/bin/env python3 -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 # # Usage process_compiler_error_log.py # diff --git a/.github/workflows/scripts/ram_usage.py b/.github/workflows/scripts/ram_usage.py index edfd601b35..9f58d81a2c 100644 --- a/.github/workflows/scripts/ram_usage.py +++ b/.github/workflows/scripts/ram_usage.py @@ -1,10 +1,8 @@ #!/usr/bin/env python3 -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 # # Usage ram_usage.py # diff --git a/.github/workflows/update_cookbook.yml b/.github/workflows/update_cookbook.yml index 8b7dfd45f4..7bfcecc4ff 100644 --- a/.github/workflows/update_cookbook.yml +++ b/.github/workflows/update_cookbook.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + name: Cookbook on: diff --git a/.gitmodules b/.gitmodules index 9b5fdeae86..f9615a8e0e 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,3 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 [submodule "sdsl-lite"] path = submodules/sdsl-lite url = https://github.com/xxsds/sdsl-lite diff --git a/.gitpod.yml b/.gitpod.yml index 05de3ef0bc..aca11a9b47 100644 --- a/.gitpod.yml +++ b/.gitpod.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + # https://www.gitpod.io/docs/references/gitpod-yml checkoutLocation: "tutorial/seqan3" workspaceLocation: "/tutorial" diff --git a/.travis.yml b/.travis.yml index 7031ed3d76..ad4d966a89 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + version: ~> 1.0 os: linux dist: focal diff --git a/CHANGELOG.md b/CHANGELOG.md index a32fa03155..975854a636 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,9 @@ + + # Changelog {#about_changelog} [TOC] diff --git a/CMakeLists.txt b/CMakeLists.txt index 5a3e9f080c..caf27afe9c 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 # This file provides functionality common to the different test modules used by # SeqAn3. To build tests, run cmake on one of the sub-folders in this directory diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md index 9debd10adf..1154db5c6c 100644 --- a/CODE_OF_CONDUCT.md +++ b/CODE_OF_CONDUCT.md @@ -1,3 +1,9 @@ + + # Code of Conduct {#about_code_of_conduct} The SeqAn project adheres to the [Berlin Code of Conduct](https://berlincodeofconduct.org/). From the code of conduct: diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index c61b4712eb..b211517290 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,3 +1,6 @@ + # Contributing {#about_contributing} First of all, thanks for wanting to contribute to SeqAn! Community is important to us and we strive to maintain a great diff --git a/LICENSES/BSD-3-Clause.txt b/LICENSES/BSD-3-Clause.txt new file mode 100644 index 0000000000..ea890afbc7 --- /dev/null +++ b/LICENSES/BSD-3-Clause.txt @@ -0,0 +1,11 @@ +Copyright (c) . + +Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: + +1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. + +2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. + +3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/LICENSES/CC-BY-4.0.txt b/LICENSES/CC-BY-4.0.txt new file mode 100644 index 0000000000..13ca539f37 --- /dev/null +++ b/LICENSES/CC-BY-4.0.txt @@ -0,0 +1,156 @@ +Creative Commons Attribution 4.0 International + + Creative Commons Corporation (“Creative Commons”) is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other relationship. Creative Commons makes its licenses and related information available on an “as-is” basis. Creative Commons gives no warranties regarding its licenses, any material licensed under their terms and conditions, or any related information. Creative Commons disclaims all liability for damages resulting from their use to the fullest extent possible. + +Using Creative Commons Public Licenses + +Creative Commons public licenses provide a standard set of terms and conditions that creators and other rights holders may use to share original works of authorship and other material subject to copyright and certain other rights specified in the public license below. The following considerations are for informational purposes only, are not exhaustive, and do not form part of our licenses. + +Considerations for licensors: Our public licenses are intended for use by those authorized to give the public permission to use material in ways otherwise restricted by copyright and certain other rights. 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Use of the licensed material may still be restricted for other reasons, including because others have copyright or other rights in the material. A licensor may make special requests, such as asking that all changes be marked or described. Although not required by our licenses, you are encouraged to respect those requests where reasonable. More considerations for the public. + +Creative Commons Attribution 4.0 International Public License + +By exercising the Licensed Rights (defined below), You accept and agree to be bound by the terms and conditions of this Creative Commons Attribution 4.0 International Public License ("Public License"). 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This notice may not be removed or altered from any source distribution. diff --git a/README.md b/README.md index 556b22dbcf..8cb0e31d7c 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,9 @@ + + # SeqAn3 -- the modern C++ library for sequence analysis [![build status][1]][2] diff --git a/build_system/seqan3-config-version.cmake b/build_system/seqan3-config-version.cmake index 302ec7959f..ac6a10f328 100644 --- a/build_system/seqan3-config-version.cmake +++ b/build_system/seqan3-config-version.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause # This file adds version support for `find_package(SEQAN3 3.1)`. # See https://cmake.org/cmake/help/v3.16/manual/cmake-packages.7.html#package-version-file for more information. diff --git a/build_system/seqan3-config.cmake b/build_system/seqan3-config.cmake index 67bbe6dedd..cb7988c91e 100644 --- a/build_system/seqan3-config.cmake +++ b/build_system/seqan3-config.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause # # This CMake module will try to find SeqAn and its dependencies. You can use # it the same way you would use any other CMake module. diff --git a/build_system/seqan3-install.cmake b/build_system/seqan3-install.cmake index 19faf268d1..32dc049a71 100644 --- a/build_system/seqan3-install.cmake +++ b/build_system/seqan3-install.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause # This file describes where and which parts of SeqAn3 should be installed to. diff --git a/build_system/seqan3-package.cmake b/build_system/seqan3-package.cmake index 6e682db545..0ff48b9d1c 100644 --- a/build_system/seqan3-package.cmake +++ b/build_system/seqan3-package.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause # This file describes how SeqAn3 will be packaged. diff --git a/doc/about/api/index.md b/doc/about/api/index.md index 3bb1999f99..7d9cf7a350 100644 --- a/doc/about/api/index.md +++ b/doc/about/api/index.md @@ -1,3 +1,8 @@ + + # Stability and long-term promises {#about_api} [TOC] diff --git a/doc/about/citing/index.md b/doc/about/citing/index.md index 78072e7b27..88d8a4d328 100644 --- a/doc/about/citing/index.md +++ b/doc/about/citing/index.md @@ -1,3 +1,8 @@ + + # Citing {#about_citing} [TOC] diff --git a/doc/about/copyright/bsdl_badge.svg.license b/doc/about/copyright/bsdl_badge.svg.license new file mode 100644 index 0000000000..f14d0d5c4d --- /dev/null +++ b/doc/about/copyright/bsdl_badge.svg.license @@ -0,0 +1,2 @@ +SPDX-FileCopyrightText: Shields IO Project Contributors +SPDX-License-Identifier: CC0-1.0 diff --git a/doc/about/copyright/cc0_badge.svg.license b/doc/about/copyright/cc0_badge.svg.license new file mode 100644 index 0000000000..f14d0d5c4d --- /dev/null +++ b/doc/about/copyright/cc0_badge.svg.license @@ -0,0 +1,2 @@ +SPDX-FileCopyrightText: Shields IO Project Contributors +SPDX-License-Identifier: CC0-1.0 diff --git a/doc/about/copyright/ccby_badge.svg.license b/doc/about/copyright/ccby_badge.svg.license new file mode 100644 index 0000000000..f14d0d5c4d --- /dev/null +++ b/doc/about/copyright/ccby_badge.svg.license @@ -0,0 +1,2 @@ +SPDX-FileCopyrightText: Shields IO Project Contributors +SPDX-License-Identifier: CC0-1.0 diff --git a/doc/about/copyright/copyfree_badge.svg.license b/doc/about/copyright/copyfree_badge.svg.license new file mode 100644 index 0000000000..f14d0d5c4d --- /dev/null +++ b/doc/about/copyright/copyfree_badge.svg.license @@ -0,0 +1,2 @@ +SPDX-FileCopyrightText: Shields IO Project Contributors +SPDX-License-Identifier: CC0-1.0 diff --git a/doc/about/customisation/index.md b/doc/about/customisation/index.md index aed2bb4b2d..c2ccda426d 100644 --- a/doc/about/customisation/index.md +++ b/doc/about/customisation/index.md @@ -1,3 +1,8 @@ + + # Customisation {#about_customisation} SeqAn clearly documents which of its interfaces are designed to be used with user-provided types and how diff --git a/doc/cookbook/alphabet_conversion.cpp b/doc/cookbook/alphabet_conversion.cpp index f889aa6188..536e67846c 100644 --- a/doc/cookbook/alphabet_conversion.cpp +++ b/doc/cookbook/alphabet_conversion.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/cookbook/alphabet_conversion.err.license b/doc/cookbook/alphabet_conversion.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/doc/cookbook/alphabet_conversion.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/doc/cookbook/compression_threads.cpp b/doc/cookbook/compression_threads.cpp index 9681512e4c..b7579d51dd 100644 --- a/doc/cookbook/compression_threads.cpp +++ b/doc/cookbook/compression_threads.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #if defined(SEQAN3_HAS_ZLIB) //![example] # include diff --git a/doc/cookbook/custom_dna4.cpp b/doc/cookbook/custom_dna4.cpp index 898dce7896..f93bd38ad7 100644 --- a/doc/cookbook/custom_dna4.cpp +++ b/doc/cookbook/custom_dna4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/cookbook/custom_dna4.err.license b/doc/cookbook/custom_dna4.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/doc/cookbook/custom_dna4.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/doc/cookbook/file_input.cpp b/doc/cookbook/file_input.cpp index 270a02b3a1..3e742da244 100644 --- a/doc/cookbook/file_input.cpp +++ b/doc/cookbook/file_input.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // to create tmp directory #include // to create right datastructure in tmp file diff --git a/doc/cookbook/file_input.err.license b/doc/cookbook/file_input.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/doc/cookbook/file_input.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/doc/cookbook/index.md b/doc/cookbook/index.md index ef6831fa3e..57f65510b5 100644 --- a/doc/cookbook/index.md +++ b/doc/cookbook/index.md @@ -1,3 +1,8 @@ + + # The SeqAn Cookbook {#cookbook} [TOC] diff --git a/doc/cookbook/simd_dna4.cpp b/doc/cookbook/simd_dna4.cpp index 26624c548b..39a87a2bbb 100644 --- a/doc/cookbook/simd_dna4.cpp +++ b/doc/cookbook/simd_dna4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // Checks that defining simd_dna4 works without putting it into the seqan3 namespace. #define SEQAN3_USE_NAMESPACE 0 diff --git a/doc/fragments/@target_alphabet@_implicit_conversion_from_@source_alphabet@.md.in b/doc/fragments/@target_alphabet@_implicit_conversion_from_@source_alphabet@.md.in index b29c290d0a..ec3fde7669 100644 --- a/doc/fragments/@target_alphabet@_implicit_conversion_from_@source_alphabet@.md.in +++ b/doc/fragments/@target_alphabet@_implicit_conversion_from_@source_alphabet@.md.in @@ -1,3 +1,7 @@ + Normally, we do not allow implicit conversion of single argument constructors, but in this case we make an exception, because seqan3::${target_alphabet} and seqan3::${source_alphabet} are interchangeable as they behave nearly the same (e.g. same ranks, same char to rank conversion). diff --git a/doc/fragments/alignment_configuration_align_config_band.md b/doc/fragments/alignment_configuration_align_config_band.md index d40e3bfdc5..16c3708da3 100644 --- a/doc/fragments/alignment_configuration_align_config_band.md +++ b/doc/fragments/alignment_configuration_align_config_band.md @@ -1,3 +1,8 @@ + + SeqAn offers the computation of banded alignments to reduce the running time of the algorithm. This can be helpful if the region in which the optimal alignment exists is known a priori. To specify the banded alignment the developer can use the seqan3::align_cfg::band_fixed_size option.
diff --git a/doc/fragments/alignment_configuration_align_config_method_global.md b/doc/fragments/alignment_configuration_align_config_method_global.md index f268c54993..fc09649995 100644 --- a/doc/fragments/alignment_configuration_align_config_method_global.md +++ b/doc/fragments/alignment_configuration_align_config_method_global.md @@ -1,3 +1,8 @@ + + **Global Alignment**: ``` --T--CC-C-AGT--TATGT-CAGGGGACACG-A-GCATGCAGA-GAC diff --git a/doc/fragments/alignment_configuration_align_config_method_local.md b/doc/fragments/alignment_configuration_align_config_method_local.md index e2cc4d9a31..72874da0fe 100644 --- a/doc/fragments/alignment_configuration_align_config_method_local.md +++ b/doc/fragments/alignment_configuration_align_config_method_local.md @@ -1,3 +1,8 @@ + + **Local Alignment** (better suited to find conserved segments): ``` tccCAGTTATGTCAGgggacacgagcatgcagagac diff --git a/doc/fragments/alignment_configuration_align_config_parallel.md b/doc/fragments/alignment_configuration_align_config_parallel.md index dfef755538..7c04e6bb4b 100644 --- a/doc/fragments/alignment_configuration_align_config_parallel.md +++ b/doc/fragments/alignment_configuration_align_config_parallel.md @@ -1,3 +1,8 @@ + + SeqAn's pairwise sequence alignment algorithm is internally accelerated using multi-threading. The parallel execution can be selected by specifying the seqan3::align_cfg::parallel configuration element. This will enable the asynchronous execution of the alignments in the backend. For the user interface nothing changes as the returned diff --git a/doc/fragments/cigar_operation_table.md b/doc/fragments/cigar_operation_table.md index 17be897976..732bafd74e 100644 --- a/doc/fragments/cigar_operation_table.md +++ b/doc/fragments/cigar_operation_table.md @@ -1,3 +1,8 @@ + + | OP | Description | |:--:|-------------------------------------------------------------------------------------------------| | M | Alignment match (can be a sequence match or mismatch, used only in basic CIGAR representations) | diff --git a/doc/fragments/dna15_implicit_conversion_from_rna15.md b/doc/fragments/dna15_implicit_conversion_from_rna15.md index 82a8f43a3d..b9cb553393 100644 --- a/doc/fragments/dna15_implicit_conversion_from_rna15.md +++ b/doc/fragments/dna15_implicit_conversion_from_rna15.md @@ -1,3 +1,8 @@ + + Normally, we do not allow implicit conversion of single argument constructors, but in this case we make an exception, because seqan3::dna15 and seqan3::rna15 are interchangeable as they behave nearly the same (e.g. same ranks, same char to rank conversion). diff --git a/doc/fragments/dna4_implicit_conversion_from_rna4.md b/doc/fragments/dna4_implicit_conversion_from_rna4.md index 1aa891e356..53403d7ac2 100644 --- a/doc/fragments/dna4_implicit_conversion_from_rna4.md +++ b/doc/fragments/dna4_implicit_conversion_from_rna4.md @@ -1,3 +1,8 @@ + + Normally, we do not allow implicit conversion of single argument constructors, but in this case we make an exception, because seqan3::dna4 and seqan3::rna4 are interchangeable as they behave nearly the same (e.g. same ranks, same char to rank conversion). diff --git a/doc/fragments/dna5_implicit_conversion_from_rna5.md b/doc/fragments/dna5_implicit_conversion_from_rna5.md index 4535031787..24c3733ac3 100644 --- a/doc/fragments/dna5_implicit_conversion_from_rna5.md +++ b/doc/fragments/dna5_implicit_conversion_from_rna5.md @@ -1,3 +1,8 @@ + + Normally, we do not allow implicit conversion of single argument constructors, but in this case we make an exception, because seqan3::dna5 and seqan3::rna5 are interchangeable as they behave nearly the same (e.g. same ranks, same char to rank conversion). diff --git a/doc/fragments/io_sam_file_input.md b/doc/fragments/io_sam_file_input.md index 4b04dfbf24..616123fea1 100644 --- a/doc/fragments/io_sam_file_input.md +++ b/doc/fragments/io_sam_file_input.md @@ -1,3 +1,8 @@ + + ### Reading SAM files #### Construction and specialisation diff --git a/doc/fragments/io_sam_file_output.md b/doc/fragments/io_sam_file_output.md index d96b37d366..21aa9a1c17 100644 --- a/doc/fragments/io_sam_file_output.md +++ b/doc/fragments/io_sam_file_output.md @@ -1,3 +1,8 @@ + + ### Writing SAM files #### Construction and specialisation diff --git a/doc/fragments/io_structure_input.md b/doc/fragments/io_structure_input.md index 81c901578b..b9950eff2e 100644 --- a/doc/fragments/io_structure_input.md +++ b/doc/fragments/io_structure_input.md @@ -1,3 +1,8 @@ + + ### Reading structure files Structured sequence files contain intra-molecular interactions of RNA or protein. Usually, but not necessarily, they diff --git a/doc/fragments/io_structure_output.md b/doc/fragments/io_structure_output.md index ba7937079e..7f636202d3 100644 --- a/doc/fragments/io_structure_output.md +++ b/doc/fragments/io_structure_output.md @@ -1,3 +1,8 @@ + + ### Writing structure files Structured sequence files contain intra-molecular interactions of RNA or protein. Usually, but not necessarily, they diff --git a/doc/fragments/rna15_implicit_conversion_from_dna15.md b/doc/fragments/rna15_implicit_conversion_from_dna15.md index d4dbe779e6..fec3f4b1ca 100644 --- a/doc/fragments/rna15_implicit_conversion_from_dna15.md +++ b/doc/fragments/rna15_implicit_conversion_from_dna15.md @@ -1,3 +1,8 @@ + + Normally, we do not allow implicit conversion of single argument constructors, but in this case we make an exception, because seqan3::rna15 and seqan3::dna15 are interchangeable as they behave nearly the same (e.g. same ranks, same char to rank conversion). diff --git a/doc/fragments/rna4_implicit_conversion_from_dna4.md b/doc/fragments/rna4_implicit_conversion_from_dna4.md index af26d546a0..8fb6872a5d 100644 --- a/doc/fragments/rna4_implicit_conversion_from_dna4.md +++ b/doc/fragments/rna4_implicit_conversion_from_dna4.md @@ -1,3 +1,8 @@ + + Normally, we do not allow implicit conversion of single argument constructors, but in this case we make an exception, because seqan3::rna4 and seqan3::dna4 are interchangeable as they behave nearly the same (e.g. same ranks, same char to rank conversion). diff --git a/doc/fragments/rna5_implicit_conversion_from_dna5.md b/doc/fragments/rna5_implicit_conversion_from_dna5.md index 042b27b722..0e530ce7eb 100644 --- a/doc/fragments/rna5_implicit_conversion_from_dna5.md +++ b/doc/fragments/rna5_implicit_conversion_from_dna5.md @@ -1,3 +1,8 @@ + + Normally, we do not allow implicit conversion of single argument constructors, but in this case we make an exception, because seqan3::rna5 and seqan3::dna5 are interchangeable as they behave nearly the same (e.g. same ranks, same char to rank conversion). diff --git a/doc/fragments/sequence_file_input.md b/doc/fragments/sequence_file_input.md index 9b4e35f363..b30f2e9140 100644 --- a/doc/fragments/sequence_file_input.md +++ b/doc/fragments/sequence_file_input.md @@ -1,3 +1,8 @@ + + ### Reading Sequence Files Sequence files are the most generic and common biological files. Well-known formats include diff --git a/doc/fragments/sequence_file_output.md b/doc/fragments/sequence_file_output.md index 02055ead05..85a2e1665c 100644 --- a/doc/fragments/sequence_file_output.md +++ b/doc/fragments/sequence_file_output.md @@ -1,3 +1,8 @@ + + ### Writing Sequence Files Sequence files are the most generic and common biological files. Well-known formats include diff --git a/doc/howto/porting/index.md b/doc/howto/porting/index.md index 219d3c0759..1b93a1694a 100644 --- a/doc/howto/porting/index.md +++ b/doc/howto/porting/index.md @@ -1,3 +1,8 @@ + + # Porting from SeqAn2 {#howto_porting} SeqAn3 is a completely new library so there is no easy or automated way of porting applications from SeqAn2. diff --git a/doc/howto/subcommand_argument_parser/index.md b/doc/howto/subcommand_argument_parser/index.md index 77b162b43b..3995e15390 100644 --- a/doc/howto/subcommand_argument_parser/index.md +++ b/doc/howto/subcommand_argument_parser/index.md @@ -1,3 +1,8 @@ + + # How to write an argument parser with subcommands {#subcommand_arg_parse} [TOC] diff --git a/doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp b/doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp index d19b49797c..0740b00de7 100644 --- a/doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp +++ b/doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/howto/subcommand_argument_parser/subcommand_arg_parse.out.license b/doc/howto/subcommand_argument_parser/subcommand_arg_parse.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/howto/subcommand_argument_parser/subcommand_arg_parse.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/howto/use_cereal/index.md b/doc/howto/use_cereal/index.md index c7a201e5ab..e0f5fb7b26 100644 --- a/doc/howto/use_cereal/index.md +++ b/doc/howto/use_cereal/index.md @@ -1,3 +1,8 @@ + + # How to serialise SeqAn data structures {#howto_use_cereal} [TOC] diff --git a/doc/howto/use_cereal/load.hpp b/doc/howto/use_cereal/load.hpp index 66deb768b3..96437759d2 100644 --- a/doc/howto/use_cereal/load.hpp +++ b/doc/howto/use_cereal/load.hpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/howto/use_cereal/store.hpp b/doc/howto/use_cereal/store.hpp index c9bb8f7c93..9b68e31c1a 100644 --- a/doc/howto/use_cereal/store.hpp +++ b/doc/howto/use_cereal/store.hpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/howto/write_a_view/index.md b/doc/howto/write_a_view/index.md index f715f03d17..70cd7b1944 100644 --- a/doc/howto/write_a_view/index.md +++ b/doc/howto/write_a_view/index.md @@ -1,3 +1,8 @@ + + # How to write a view {#howto_write_a_view} [TOC] diff --git a/doc/howto/write_a_view/solution_iterator.cpp b/doc/howto/write_a_view/solution_iterator.cpp index bb120d6a84..f6fa258b3f 100644 --- a/doc/howto/write_a_view/solution_iterator.cpp +++ b/doc/howto/write_a_view/solution_iterator.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + //![start] #include #include diff --git a/doc/howto/write_a_view/solution_iterator.out.license b/doc/howto/write_a_view/solution_iterator.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/howto/write_a_view/solution_iterator.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/howto/write_a_view/solution_view.cpp b/doc/howto/write_a_view/solution_view.cpp index ea3992e525..945e10cb53 100644 --- a/doc/howto/write_a_view/solution_view.cpp +++ b/doc/howto/write_a_view/solution_view.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause + //![iterator] #include #include diff --git a/doc/howto/write_a_view/solution_view.err.license b/doc/howto/write_a_view/solution_view.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/howto/write_a_view/solution_view.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/howto/write_a_view/solution_view.out.license b/doc/howto/write_a_view/solution_view.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/howto/write_a_view/solution_view.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/howto/write_a_view/view_exercise1.cpp b/doc/howto/write_a_view/view_exercise1.cpp index b15a29e38b..5f497bd3fe 100644 --- a/doc/howto/write_a_view/view_exercise1.cpp +++ b/doc/howto/write_a_view/view_exercise1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //![start] #include #include diff --git a/doc/howto/write_a_view/view_exercise1.out.license b/doc/howto/write_a_view/view_exercise1.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/howto/write_a_view/view_exercise1.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/howto/write_a_view/view_exercise2.cpp b/doc/howto/write_a_view/view_exercise2.cpp index 30419345fa..b0ed252869 100644 --- a/doc/howto/write_a_view/view_exercise2.cpp +++ b/doc/howto/write_a_view/view_exercise2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //![start] #include diff --git a/doc/howto/write_a_view/view_exercise2.err.license b/doc/howto/write_a_view/view_exercise2.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/howto/write_a_view/view_exercise2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/howto/write_an_alphabet/dna2_alphabet.cpp b/doc/howto/write_an_alphabet/dna2_alphabet.cpp index 98ff190d15..f3bc89bc09 100644 --- a/doc/howto/write_an_alphabet/dna2_alphabet.cpp +++ b/doc/howto/write_an_alphabet/dna2_alphabet.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause //! [writable_alphabet] #include diff --git a/doc/howto/write_an_alphabet/dna2_comparison_operators.cpp b/doc/howto/write_an_alphabet/dna2_comparison_operators.cpp index 9b63e3222e..b7a1e89f0f 100644 --- a/doc/howto/write_an_alphabet/dna2_comparison_operators.cpp +++ b/doc/howto/write_an_alphabet/dna2_comparison_operators.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause //! [comparison] #include // alphabet concept checks diff --git a/doc/howto/write_an_alphabet/dna2_derive_from_base.cpp b/doc/howto/write_an_alphabet/dna2_derive_from_base.cpp index d0b2b09076..06987dd189 100644 --- a/doc/howto/write_an_alphabet/dna2_derive_from_base.cpp +++ b/doc/howto/write_an_alphabet/dna2_derive_from_base.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause //! [dna2] #include // std::array diff --git a/doc/howto/write_an_alphabet/dna2_equality_operator.cpp b/doc/howto/write_an_alphabet/dna2_equality_operator.cpp index 4a131d9250..6aa8774334 100644 --- a/doc/howto/write_an_alphabet/dna2_equality_operator.cpp +++ b/doc/howto/write_an_alphabet/dna2_equality_operator.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause //! [equality] #include // alphabet concept checks diff --git a/doc/howto/write_an_alphabet/dna2_inequality_operator.cpp b/doc/howto/write_an_alphabet/dna2_inequality_operator.cpp index 2fcf69e865..0285d99b35 100644 --- a/doc/howto/write_an_alphabet/dna2_inequality_operator.cpp +++ b/doc/howto/write_an_alphabet/dna2_inequality_operator.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause //! [inequality] #include // alphabet concept checks diff --git a/doc/howto/write_an_alphabet/dna2_only_rank.cpp b/doc/howto/write_an_alphabet/dna2_only_rank.cpp index 1d9827b403..2229d9f58d 100644 --- a/doc/howto/write_an_alphabet/dna2_only_rank.cpp +++ b/doc/howto/write_an_alphabet/dna2_only_rank.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause //! [struct] #include // alphabet concept checks diff --git a/doc/howto/write_an_alphabet/dna2_semialphabet.cpp b/doc/howto/write_an_alphabet/dna2_semialphabet.cpp index fdc37ed28d..3ae4598df3 100644 --- a/doc/howto/write_an_alphabet/dna2_semialphabet.cpp +++ b/doc/howto/write_an_alphabet/dna2_semialphabet.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause //! [semialphabet] #include diff --git a/doc/howto/write_an_alphabet/dna2_semialphabet.out.license b/doc/howto/write_an_alphabet/dna2_semialphabet.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/howto/write_an_alphabet/dna2_semialphabet.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/howto/write_an_alphabet/index.md b/doc/howto/write_an_alphabet/index.md index edda9b1b2a..c8e79b0282 100644 --- a/doc/howto/write_an_alphabet/index.md +++ b/doc/howto/write_an_alphabet/index.md @@ -1,3 +1,8 @@ + + # How to write your own alphabet {#howto_write_an_alphabet} [TOC] diff --git a/doc/main_page.md b/doc/main_page.md index 619a6e2a7c..8adf531315 100644 --- a/doc/main_page.md +++ b/doc/main_page.md @@ -1,3 +1,8 @@ + + # Welcome {#mainpage} Welcome to the documentation of the SeqAn library. diff --git a/doc/setup/library_tests/index.md b/doc/setup/library_tests/index.md index 24d544596e..804e6a482c 100644 --- a/doc/setup/library_tests/index.md +++ b/doc/setup/library_tests/index.md @@ -1,3 +1,8 @@ + + # Setting up library tests {#setup_tests} Learning Objective:
diff --git a/doc/setup/quickstart_cmake/index.md b/doc/setup/quickstart_cmake/index.md index ad376dfc33..9ef60e9d72 100644 --- a/doc/setup/quickstart_cmake/index.md +++ b/doc/setup/quickstart_cmake/index.md @@ -1,3 +1,8 @@ + + # Quick Setup (using CMake) {#setup} Learning Objective:
diff --git a/doc/tutorial/01_introduction/index.md b/doc/tutorial/01_introduction/index.md index 48cc33ab43..a6420c288d 100644 --- a/doc/tutorial/01_introduction/index.md +++ b/doc/tutorial/01_introduction/index.md @@ -1,3 +1,8 @@ + + # First steps with SeqAn {#tutorial_first_example} ***Learning Objective:*** diff --git a/doc/tutorial/01_introduction/introduction_debug_stream.cpp b/doc/tutorial/01_introduction/introduction_debug_stream.cpp index 24f83f1f1d..3863cb9e18 100644 --- a/doc/tutorial/01_introduction/introduction_debug_stream.cpp +++ b/doc/tutorial/01_introduction/introduction_debug_stream.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //! [debug] #include // for std::cerr #include // for std::vector diff --git a/doc/tutorial/01_introduction/introduction_debug_stream.err.license b/doc/tutorial/01_introduction/introduction_debug_stream.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/01_introduction/introduction_debug_stream.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/01_introduction/introduction_dna4.cpp b/doc/tutorial/01_introduction/introduction_dna4.cpp index 1bb941eb5e..b0961175e5 100644 --- a/doc/tutorial/01_introduction/introduction_dna4.cpp +++ b/doc/tutorial/01_introduction/introduction_dna4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //! [debug] #include // for std::cerr #include // for std::vector diff --git a/doc/tutorial/01_introduction/introduction_dna4.err b/doc/tutorial/01_introduction/introduction_dna4.err old mode 100755 new mode 100644 diff --git a/doc/tutorial/01_introduction/introduction_dna4.err.license b/doc/tutorial/01_introduction/introduction_dna4.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/01_introduction/introduction_dna4.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/01_introduction/introduction_hello_world.cpp b/doc/tutorial/01_introduction/introduction_hello_world.cpp index e5ab967074..f110b475ba 100644 --- a/doc/tutorial/01_introduction/introduction_hello_world.cpp +++ b/doc/tutorial/01_introduction/introduction_hello_world.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //! [hello] #include // for debug_stream diff --git a/doc/tutorial/01_introduction/introduction_hello_world.err.license b/doc/tutorial/01_introduction/introduction_hello_world.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/01_introduction/introduction_hello_world.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/02_argument_parser/index.md b/doc/tutorial/02_argument_parser/index.md old mode 100755 new mode 100644 index 7f6d6a9528..ef1084645f --- a/doc/tutorial/02_argument_parser/index.md +++ b/doc/tutorial/02_argument_parser/index.md @@ -1,3 +1,8 @@ + + # Parsing command line arguments with Sharg {#tutorial_argument_parser} We have separated the feature of parsing command line arguments to its own project: diff --git a/doc/tutorial/03_concepts/index.md b/doc/tutorial/03_concepts/index.md index b43840deb3..f6a6a7d1d9 100644 --- a/doc/tutorial/03_concepts/index.md +++ b/doc/tutorial/03_concepts/index.md @@ -1,3 +1,8 @@ + + # C++ Concepts {#tutorial_concepts} ***Learning Objective:*** diff --git a/doc/tutorial/03_concepts/model_a_concept.cpp b/doc/tutorial/03_concepts/model_a_concept.cpp old mode 100755 new mode 100644 index 89495b67ca..318312ec71 --- a/doc/tutorial/03_concepts/model_a_concept.cpp +++ b/doc/tutorial/03_concepts/model_a_concept.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/03_concepts/model_a_concept.err.license b/doc/tutorial/03_concepts/model_a_concept.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/03_concepts/model_a_concept.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/03_concepts/overloading1.cpp b/doc/tutorial/03_concepts/overloading1.cpp index 235629d955..9cf7eb5cd2 100644 --- a/doc/tutorial/03_concepts/overloading1.cpp +++ b/doc/tutorial/03_concepts/overloading1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include // for std::cout diff --git a/doc/tutorial/03_concepts/overloading1.out.license b/doc/tutorial/03_concepts/overloading1.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/03_concepts/overloading1.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/03_concepts/overloading2.cpp b/doc/tutorial/03_concepts/overloading2.cpp index d1224ed8df..837dade627 100644 --- a/doc/tutorial/03_concepts/overloading2.cpp +++ b/doc/tutorial/03_concepts/overloading2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include // for std::cout diff --git a/doc/tutorial/03_concepts/overloading2.out.license b/doc/tutorial/03_concepts/overloading2.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/03_concepts/overloading2.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/03_concepts/overloading_solution1.cpp b/doc/tutorial/03_concepts/overloading_solution1.cpp index 059e5b0754..c7ad113e09 100644 --- a/doc/tutorial/03_concepts/overloading_solution1.cpp +++ b/doc/tutorial/03_concepts/overloading_solution1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // for std::cout #include // include all alphabet headers diff --git a/doc/tutorial/03_concepts/overloading_solution1.out.license b/doc/tutorial/03_concepts/overloading_solution1.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/03_concepts/overloading_solution1.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/03_concepts/overloading_solution2.cpp b/doc/tutorial/03_concepts/overloading_solution2.cpp index c9dbb16967..3a439b4302 100644 --- a/doc/tutorial/03_concepts/overloading_solution2.cpp +++ b/doc/tutorial/03_concepts/overloading_solution2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // for std::cout #include // include all alphabet headers diff --git a/doc/tutorial/03_concepts/overloading_solution2.out.license b/doc/tutorial/03_concepts/overloading_solution2.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/03_concepts/overloading_solution2.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/03_concepts/specialisation.cpp b/doc/tutorial/03_concepts/specialisation.cpp index 7367ae1564..b07063cdc4 100644 --- a/doc/tutorial/03_concepts/specialisation.cpp +++ b/doc/tutorial/03_concepts/specialisation.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include // for std::pair diff --git a/doc/tutorial/04_alphabet/alphabet_gc_content.cpp b/doc/tutorial/04_alphabet/alphabet_gc_content.cpp index 8517ece0d4..31eed3fd78 100644 --- a/doc/tutorial/04_alphabet/alphabet_gc_content.cpp +++ b/doc/tutorial/04_alphabet/alphabet_gc_content.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //! [exercise] #include // std::array #include // std::string diff --git a/doc/tutorial/04_alphabet/alphabet_gc_content.out.license b/doc/tutorial/04_alphabet/alphabet_gc_content.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/04_alphabet/alphabet_gc_content.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/04_alphabet/alphabet_main.cpp b/doc/tutorial/04_alphabet/alphabet_main.cpp index 7079e80924..68a001d26f 100644 --- a/doc/tutorial/04_alphabet/alphabet_main.cpp +++ b/doc/tutorial/04_alphabet/alphabet_main.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/04_alphabet/alphabet_main.err.license b/doc/tutorial/04_alphabet/alphabet_main.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/04_alphabet/alphabet_main.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/04_alphabet/index.md b/doc/tutorial/04_alphabet/index.md index b61c17589f..706d594b74 100644 --- a/doc/tutorial/04_alphabet/index.md +++ b/doc/tutorial/04_alphabet/index.md @@ -1,3 +1,8 @@ + + # Alphabets in SeqAn {#tutorial_alphabets} ***Learning Objective:*** diff --git a/doc/tutorial/05_ranges/index.md b/doc/tutorial/05_ranges/index.md index debf178387..345ffb1313 100644 --- a/doc/tutorial/05_ranges/index.md +++ b/doc/tutorial/05_ranges/index.md @@ -1,3 +1,8 @@ + + # Ranges {#tutorial_ranges} [TOC] diff --git a/doc/tutorial/05_ranges/range_snippets.cpp b/doc/tutorial/05_ranges/range_snippets.cpp index 12c67930bf..b4ba502355 100644 --- a/doc/tutorial/05_ranges/range_snippets.cpp +++ b/doc/tutorial/05_ranges/range_snippets.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include // include all of the standard library's views #include diff --git a/doc/tutorial/05_ranges/range_snippets.out.license b/doc/tutorial/05_ranges/range_snippets.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/05_ranges/range_snippets.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/05_ranges/range_solution1.cpp b/doc/tutorial/05_ranges/range_solution1.cpp index 62d039ab90..ac9ea57612 100644 --- a/doc/tutorial/05_ranges/range_solution1.cpp +++ b/doc/tutorial/05_ranges/range_solution1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include // include all of the standard library's views #include diff --git a/doc/tutorial/05_ranges/range_solution1.out.license b/doc/tutorial/05_ranges/range_solution1.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/05_ranges/range_solution1.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/05_ranges/range_solution3.cpp b/doc/tutorial/05_ranges/range_solution3.cpp index 24bffee2a2..afaa1af780 100644 --- a/doc/tutorial/05_ranges/range_solution3.cpp +++ b/doc/tutorial/05_ranges/range_solution3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // include all of the standard library's views #include // include all of SeqAn's views diff --git a/doc/tutorial/05_ranges/range_solution3.out.license b/doc/tutorial/05_ranges/range_solution3.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/05_ranges/range_solution3.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/05_ranges/range_solution4.cpp b/doc/tutorial/05_ranges/range_solution4.cpp index cd68b33039..cabd592d83 100644 --- a/doc/tutorial/05_ranges/range_solution4.cpp +++ b/doc/tutorial/05_ranges/range_solution4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include // include bitpacked sequence diff --git a/doc/tutorial/05_ranges/range_solution4.out.license b/doc/tutorial/05_ranges/range_solution4.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/05_ranges/range_solution4.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/05_ranges/to.cpp b/doc/tutorial/05_ranges/to.cpp index af9ca7d55f..2ff40d4d91 100644 --- a/doc/tutorial/05_ranges/to.cpp +++ b/doc/tutorial/05_ranges/to.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/06_minimisers/index.md b/doc/tutorial/06_minimisers/index.md index 943e5b6ed6..4f88ba779c 100644 --- a/doc/tutorial/06_minimisers/index.md +++ b/doc/tutorial/06_minimisers/index.md @@ -1,3 +1,8 @@ + + # Minimisers {#tutorial_minimiser} [TOC] diff --git a/doc/tutorial/06_minimisers/minimisers.png.license b/doc/tutorial/06_minimisers/minimisers.png.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/06_minimisers/minimisers.png.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/06_minimisers/minimisers_snippets.cpp b/doc/tutorial/06_minimisers/minimisers_snippets.cpp index 5628111487..a41ba27d5a 100644 --- a/doc/tutorial/06_minimisers/minimisers_snippets.cpp +++ b/doc/tutorial/06_minimisers/minimisers_snippets.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include // include all of the standard library's views #include diff --git a/doc/tutorial/06_minimisers/minimisers_solution1.cpp b/doc/tutorial/06_minimisers/minimisers_solution1.cpp index babadfd50a..c5d08b053d 100644 --- a/doc/tutorial/06_minimisers/minimisers_solution1.cpp +++ b/doc/tutorial/06_minimisers/minimisers_solution1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/06_minimisers/minimisers_solution1.err.license b/doc/tutorial/06_minimisers/minimisers_solution1.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/06_minimisers/minimisers_solution1.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/06_minimisers/minimisers_solution2.cpp b/doc/tutorial/06_minimisers/minimisers_solution2.cpp index b9f13d2eb8..4cd549cf1f 100644 --- a/doc/tutorial/06_minimisers/minimisers_solution2.cpp +++ b/doc/tutorial/06_minimisers/minimisers_solution2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/06_minimisers/minimisers_solution2.err.license b/doc/tutorial/06_minimisers/minimisers_solution2.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/06_minimisers/minimisers_solution2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/06_minimisers/minimisers_solution3.cpp b/doc/tutorial/06_minimisers/minimisers_solution3.cpp index 870e077a1b..b7a318eba8 100644 --- a/doc/tutorial/06_minimisers/minimisers_solution3.cpp +++ b/doc/tutorial/06_minimisers/minimisers_solution3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/06_minimisers/minimisers_solution3.err.license b/doc/tutorial/06_minimisers/minimisers_solution3.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/06_minimisers/minimisers_solution3.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/06_minimisers/seed_example.cpp b/doc/tutorial/06_minimisers/seed_example.cpp index 3e59a44d18..e8d15c6a85 100644 --- a/doc/tutorial/06_minimisers/seed_example.cpp +++ b/doc/tutorial/06_minimisers/seed_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/06_minimisers/seed_example.err.license b/doc/tutorial/06_minimisers/seed_example.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/06_minimisers/seed_example.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/example.embl.license b/doc/tutorial/07_sequence_file/example.embl.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/example.embl.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/example.fasta.license b/doc/tutorial/07_sequence_file/example.fasta.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/example.fasta.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/example.fastq.license b/doc/tutorial/07_sequence_file/example.fastq.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/example.fastq.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/index.md b/doc/tutorial/07_sequence_file/index.md index 84a25c8340..516ed6f65d 100644 --- a/doc/tutorial/07_sequence_file/index.md +++ b/doc/tutorial/07_sequence_file/index.md @@ -1,3 +1,8 @@ + + # Sequence File Input and Output {#tutorial_sequence_file} Learning Objective:
diff --git a/doc/tutorial/07_sequence_file/sequence_file_amino_acid_type_trait.cpp b/doc/tutorial/07_sequence_file/sequence_file_amino_acid_type_trait.cpp index fe0eefee66..f28cc1d1af 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_amino_acid_type_trait.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_amino_acid_type_trait.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fasta{"my.fasta", R"//![fasta_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_file_conversion.cpp b/doc/tutorial/07_sequence_file/sequence_file_file_conversion.cpp index ca98e6c3ea..dc8731877b 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_file_conversion.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_file_conversion.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_file_extensions.cpp b/doc/tutorial/07_sequence_file/sequence_file_file_extensions.cpp index d78915abed..f16a6392d2 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_file_extensions.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_file_extensions.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // std::filesystem::current_path() / "my.qq" will be deleted after the execution seqan3::test::create_temporary_snippet_file my_qq{"my.qq", "\n"}; diff --git a/doc/tutorial/07_sequence_file/sequence_file_file_extensions.err.license b/doc/tutorial/07_sequence_file/sequence_file_file_extensions.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/sequence_file_file_extensions.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/sequence_file_filename_construction.cpp b/doc/tutorial/07_sequence_file/sequence_file_filename_construction.cpp index 95509bc5db..0f3ae81532 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_filename_construction.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_filename_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // this macro will rename the `main` function below as `sam_file_filename_construction`. // we just want to show that the syntax does compile. #define main sequence_file_filename_construction diff --git a/doc/tutorial/07_sequence_file/sequence_file_move_record.cpp b/doc/tutorial/07_sequence_file/sequence_file_move_record.cpp index 706040fd9a..dad4a9ca1e 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_move_record.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_move_record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // std::filesystem::current_path() / "my.fastq" will be deleted after the execution seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", "\n"}; diff --git a/doc/tutorial/07_sequence_file/sequence_file_output_record.cpp b/doc/tutorial/07_sequence_file/sequence_file_output_record.cpp index faa4d9e1b1..e1724c19f3 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_output_record.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_output_record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/07_sequence_file/sequence_file_output_record.out.license b/doc/tutorial/07_sequence_file/sequence_file_output_record.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/sequence_file_output_record.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/sequence_file_paired_reads.cpp b/doc/tutorial/07_sequence_file/sequence_file_paired_reads.cpp index dfd22f966c..7c45412f28 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_paired_reads.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_paired_reads.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_piping_in_out.cpp b/doc/tutorial/07_sequence_file/sequence_file_piping_in_out.cpp index 106bcc96c2..02cef6a506 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_piping_in_out.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_piping_in_out.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_quality_filter.cpp b/doc/tutorial/07_sequence_file/sequence_file_quality_filter.cpp index c55f93e05d..52da6acd97 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_quality_filter.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_quality_filter.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_quality_filter.err.license b/doc/tutorial/07_sequence_file/sequence_file_quality_filter.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/sequence_file_quality_filter.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/sequence_file_read_in_batches.cpp b/doc/tutorial/07_sequence_file/sequence_file_read_in_batches.cpp index 9902767eed..e14571cfbe 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_read_in_batches.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_read_in_batches.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_read_in_batches.err.license b/doc/tutorial/07_sequence_file/sequence_file_read_in_batches.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/sequence_file_read_in_batches.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/sequence_file_record_range.cpp b/doc/tutorial/07_sequence_file/sequence_file_record_range.cpp index 2ceaed0b0f..48e88d360a 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_record_range.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_record_range.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // std::filesystem::current_path() / "my.fastq" will be deleted after the execution seqan3::test::create_temporary_snippet_file my_fastq{"my.fasta", "\n"}; diff --git a/doc/tutorial/07_sequence_file/sequence_file_record_type.cpp b/doc/tutorial/07_sequence_file/sequence_file_record_type.cpp index 79165593a6..58f8c99d47 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_record_type.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_record_type.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", "\n"}; diff --git a/doc/tutorial/07_sequence_file/sequence_file_solution1.cpp b/doc/tutorial/07_sequence_file/sequence_file_solution1.cpp index fb124e642e..3d2692e588 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_solution1.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_solution1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_solution1.err.license b/doc/tutorial/07_sequence_file/sequence_file_solution1.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/sequence_file_solution1.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/sequence_file_solution2.cpp b/doc/tutorial/07_sequence_file/sequence_file_solution2.cpp index 9240067a87..768065b3ba 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_solution2.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_solution2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fasta{"my.fasta", R"//![fasta_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_solution2.err.license b/doc/tutorial/07_sequence_file/sequence_file_solution2.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/sequence_file_solution2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/sequence_file_solution3.cpp b/doc/tutorial/07_sequence_file/sequence_file_solution3.cpp index 5d4475ded4..0bc747cb7c 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_solution3.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_solution3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_solution3.err.license b/doc/tutorial/07_sequence_file/sequence_file_solution3.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/07_sequence_file/sequence_file_solution3.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/07_sequence_file/sequence_file_solution4.cpp b/doc/tutorial/07_sequence_file/sequence_file_solution4.cpp index dd9004c0ee..3407e50251 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_solution4.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_solution4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/07_sequence_file/sequence_file_solution5.cpp b/doc/tutorial/07_sequence_file/sequence_file_solution5.cpp index b7e8b802fc..b1e3941ca0 100644 --- a/doc/tutorial/07_sequence_file/sequence_file_solution5.cpp +++ b/doc/tutorial/07_sequence_file/sequence_file_solution5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq", R"//![fastq_file]( diff --git a/doc/tutorial/08_pairwise_alignment/align_transcript.png.license b/doc/tutorial/08_pairwise_alignment/align_transcript.png.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/align_transcript.png.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/08_pairwise_alignment/configurations.cpp b/doc/tutorial/08_pairwise_alignment/configurations.cpp index 7f41ab248d..7cc13eba42 100644 --- a/doc/tutorial/08_pairwise_alignment/configurations.cpp +++ b/doc/tutorial/08_pairwise_alignment/configurations.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //! [include] #include //! [include] diff --git a/doc/tutorial/08_pairwise_alignment/index.md b/doc/tutorial/08_pairwise_alignment/index.md index 4fa049915b..f5f527549c 100644 --- a/doc/tutorial/08_pairwise_alignment/index.md +++ b/doc/tutorial/08_pairwise_alignment/index.md @@ -1,3 +1,8 @@ + + # Pairwise Alignment {#tutorial_pairwise_alignment} Learning Objective:
diff --git a/doc/tutorial/08_pairwise_alignment/pa_assignment_3_solution.cpp b/doc/tutorial/08_pairwise_alignment/pa_assignment_3_solution.cpp index d9790afcad..5059e8dbf3 100644 --- a/doc/tutorial/08_pairwise_alignment/pa_assignment_3_solution.cpp +++ b/doc/tutorial/08_pairwise_alignment/pa_assignment_3_solution.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/08_pairwise_alignment/pa_assignment_3_solution.err.license b/doc/tutorial/08_pairwise_alignment/pa_assignment_3_solution.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/pa_assignment_3_solution.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_first_global.cpp b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_first_global.cpp index f52df88731..a14724dc10 100644 --- a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_first_global.cpp +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_first_global.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_first_global.err.license b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_first_global.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_first_global.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_1.cpp b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_1.cpp index 25eb2991f9..6a3cf9037a 100644 --- a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_1.cpp +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_1.err.license b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_1.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_1.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_2.cpp b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_2.cpp index 3b072c9889..a2fd4f1acd 100644 --- a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_2.cpp +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_2.err.license b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_2.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_3.cpp b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_3.cpp index 019729f9b3..de39556335 100644 --- a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_3.cpp +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // for seqan3::align_cfg and seqan3::align_pairwise #include // for seqan3::aminoacid_scoring_scheme and // seqan3::aminoacid_similarity_matrix diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_3.err.license b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_3.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_3.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_4.cpp b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_4.cpp index 6d5e7f3fa5..50a0be865c 100644 --- a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_4.cpp +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_4.err.license b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_4.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_4.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_5.cpp b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_5.cpp index ac9866e429..28e7afe1cf 100644 --- a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_5.cpp +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_5.err.license b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_5.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_5.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_6.cpp b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_6.cpp index d16f4bdeb8..2a860cfdab 100644 --- a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_6.cpp +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_6.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_6.err.license b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_6.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/08_pairwise_alignment/pairwise_alignment_solution_6.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/09_search/cleanup.hpp b/doc/tutorial/09_search/cleanup.hpp index 2ee6e5e3e6..826c0710fa 100644 --- a/doc/tutorial/09_search/cleanup.hpp +++ b/doc/tutorial/09_search/cleanup.hpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC-BY-4.0 + #include namespace seqan3 diff --git a/doc/tutorial/09_search/index.md b/doc/tutorial/09_search/index.md index dce2b29b0b..8e04968eea 100644 --- a/doc/tutorial/09_search/index.md +++ b/doc/tutorial/09_search/index.md @@ -1,3 +1,8 @@ + + # Indexing and searching with SeqAn {#tutorial_index_search} Learning Objective:
diff --git a/doc/tutorial/09_search/search_basic_index.cpp b/doc/tutorial/09_search/search_basic_index.cpp index ab945f48d7..6abab0fa44 100644 --- a/doc/tutorial/09_search/search_basic_index.cpp +++ b/doc/tutorial/09_search/search_basic_index.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // for using the bi_fm_index #include // for using the fm_index diff --git a/doc/tutorial/09_search/search_basic_search.cpp b/doc/tutorial/09_search/search_basic_search.cpp index 25a07d2958..0d9316ba60 100644 --- a/doc/tutorial/09_search/search_basic_search.cpp +++ b/doc/tutorial/09_search/search_basic_search.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // pretty printing #include #include diff --git a/doc/tutorial/09_search/search_basic_search.err.license b/doc/tutorial/09_search/search_basic_search.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/09_search/search_basic_search.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/09_search/search_small_snippets.cpp b/doc/tutorial/09_search/search_small_snippets.cpp index f71b4fbfdf..bb5e62b7d1 100644 --- a/doc/tutorial/09_search/search_small_snippets.cpp +++ b/doc/tutorial/09_search/search_small_snippets.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include "cleanup.hpp" seqan3::cleanup index_file{"index.file"}; diff --git a/doc/tutorial/09_search/search_small_snippets.err.license b/doc/tutorial/09_search/search_small_snippets.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/09_search/search_small_snippets.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/09_search/search_solution1.cpp b/doc/tutorial/09_search/search_solution1.cpp index 83110bde6f..6751a3c2a3 100644 --- a/doc/tutorial/09_search/search_solution1.cpp +++ b/doc/tutorial/09_search/search_solution1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #if SEQAN3_WITH_CEREAL # include "cleanup.hpp" diff --git a/doc/tutorial/09_search/search_solution2.cpp b/doc/tutorial/09_search/search_solution2.cpp index 04c911b91e..f8a152e305 100644 --- a/doc/tutorial/09_search/search_solution2.cpp +++ b/doc/tutorial/09_search/search_solution2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/09_search/search_solution2.err.license b/doc/tutorial/09_search/search_solution2.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/09_search/search_solution2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/09_search/search_solution3.cpp b/doc/tutorial/09_search/search_solution3.cpp index 92b01e2f0a..af58e84c50 100644 --- a/doc/tutorial/09_search/search_solution3.cpp +++ b/doc/tutorial/09_search/search_solution3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/09_search/search_solution3.err.license b/doc/tutorial/09_search/search_solution3.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/09_search/search_solution3.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/09_search/search_solution4.cpp b/doc/tutorial/09_search/search_solution4.cpp index 7cccea5b10..6b21f4292b 100644 --- a/doc/tutorial/09_search/search_solution4.cpp +++ b/doc/tutorial/09_search/search_solution4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/09_search/search_solution4.err.license b/doc/tutorial/09_search/search_solution4.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/09_search/search_solution4.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/09_search/search_solution5.cpp b/doc/tutorial/09_search/search_solution5.cpp index 2e85ce6739..1b892dd9d9 100644 --- a/doc/tutorial/09_search/search_solution5.cpp +++ b/doc/tutorial/09_search/search_solution5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/09_search/search_solution5.err.license b/doc/tutorial/09_search/search_solution5.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/09_search/search_solution5.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/09_search/search_span.cpp b/doc/tutorial/09_search/search_span.cpp index 93f691f7f8..10e4e7cdf1 100644 --- a/doc/tutorial/09_search/search_span.cpp +++ b/doc/tutorial/09_search/search_span.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/09_search/search_span.err.license b/doc/tutorial/09_search/search_span.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/09_search/search_span.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/10_sam_file/example.sam.license b/doc/tutorial/10_sam_file/example.sam.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/10_sam_file/example.sam.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/10_sam_file/index.md b/doc/tutorial/10_sam_file/index.md index 14651452e4..ffeeab6305 100644 --- a/doc/tutorial/10_sam_file/index.md +++ b/doc/tutorial/10_sam_file/index.md @@ -1,3 +1,8 @@ + + # SAM Input and Output in SeqAn {#tutorial_sam_file} ***Learning Objective:*** diff --git a/doc/tutorial/10_sam_file/sam_file_file_extensions.cpp b/doc/tutorial/10_sam_file/sam_file_file_extensions.cpp index d7826b79d0..9723168f58 100644 --- a/doc/tutorial/10_sam_file/sam_file_file_extensions.cpp +++ b/doc/tutorial/10_sam_file/sam_file_file_extensions.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //![main] #include #include diff --git a/doc/tutorial/10_sam_file/sam_file_file_extensions.err.license b/doc/tutorial/10_sam_file/sam_file_file_extensions.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/10_sam_file/sam_file_file_extensions.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/10_sam_file/sam_file_filename_construction.cpp b/doc/tutorial/10_sam_file/sam_file_filename_construction.cpp index a437289d86..8ae5dd0408 100644 --- a/doc/tutorial/10_sam_file/sam_file_filename_construction.cpp +++ b/doc/tutorial/10_sam_file/sam_file_filename_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // this macro will rename the `main` function below as `sam_file_filename_construction`. // we just want to show that the syntax does compile. // We do this to show the usage of std::cin within a copyable snippet while being able to execute this snippet diff --git a/doc/tutorial/10_sam_file/sam_file_read_cigar.cpp b/doc/tutorial/10_sam_file/sam_file_read_cigar.cpp index 1eb6e8a52f..849405306c 100644 --- a/doc/tutorial/10_sam_file/sam_file_read_cigar.cpp +++ b/doc/tutorial/10_sam_file/sam_file_read_cigar.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file example_sam{"my.sam", R"//![sam_file]( diff --git a/doc/tutorial/10_sam_file/sam_file_read_cigar.err.license b/doc/tutorial/10_sam_file/sam_file_read_cigar.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/10_sam_file/sam_file_read_cigar.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/10_sam_file/sam_file_sam_record.cpp b/doc/tutorial/10_sam_file/sam_file_sam_record.cpp index a6e174bd4e..f57b5f0904 100644 --- a/doc/tutorial/10_sam_file/sam_file_sam_record.cpp +++ b/doc/tutorial/10_sam_file/sam_file_sam_record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file example_sam{"example.sam", R"//![sam_file]( diff --git a/doc/tutorial/10_sam_file/sam_file_sam_record.err.license b/doc/tutorial/10_sam_file/sam_file_sam_record.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/10_sam_file/sam_file_sam_record.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/10_sam_file/sam_file_solution1.cpp b/doc/tutorial/10_sam_file/sam_file_solution1.cpp index e1ed3a8523..707d6ec154 100644 --- a/doc/tutorial/10_sam_file/sam_file_solution1.cpp +++ b/doc/tutorial/10_sam_file/sam_file_solution1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file my_sam{"my.sam", R"//![sam_file]( diff --git a/doc/tutorial/10_sam_file/sam_file_solution1.err.license b/doc/tutorial/10_sam_file/sam_file_solution1.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/10_sam_file/sam_file_solution1.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/10_sam_file/sam_file_solution2.cpp b/doc/tutorial/10_sam_file/sam_file_solution2.cpp index 851f23bae5..cce8eae2af 100644 --- a/doc/tutorial/10_sam_file/sam_file_solution2.cpp +++ b/doc/tutorial/10_sam_file/sam_file_solution2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include seqan3::test::create_temporary_snippet_file reference_fasta{"reference.fasta", R"//![ref_file]( diff --git a/doc/tutorial/10_sam_file/sam_file_solution2.err.license b/doc/tutorial/10_sam_file/sam_file_solution2.err.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/10_sam_file/sam_file_solution2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/10_sam_file/sam_file_solution3.cpp b/doc/tutorial/10_sam_file/sam_file_solution3.cpp index e6f10b2d05..5de8063a7a 100644 --- a/doc/tutorial/10_sam_file/sam_file_solution3.cpp +++ b/doc/tutorial/10_sam_file/sam_file_solution3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // std::filesystem::current_path() / "my.sam" will be deleted after the execution diff --git a/doc/tutorial/10_sam_file/sam_file_writing.cpp b/doc/tutorial/10_sam_file/sam_file_writing.cpp index 591538d5d9..aa30881fee 100644 --- a/doc/tutorial/10_sam_file/sam_file_writing.cpp +++ b/doc/tutorial/10_sam_file/sam_file_writing.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // std::filesystem::current_path() / "out.sam" will be deleted after the execution seqan3::test::create_temporary_snippet_file example_sam{"out.sam", ""}; diff --git a/doc/tutorial/11_read_mapper/index.md b/doc/tutorial/11_read_mapper/index.md index a256cd18a5..9edc031120 100644 --- a/doc/tutorial/11_read_mapper/index.md +++ b/doc/tutorial/11_read_mapper/index.md @@ -1,3 +1,8 @@ + + # Implementing your own read mapper with SeqAn {#tutorial_read_mapper} Learning Objective:
diff --git a/doc/tutorial/11_read_mapper/read_mapper_indexer_step1.cpp b/doc/tutorial/11_read_mapper/read_mapper_indexer_step1.cpp index 5cf4574c57..3eaffae405 100644 --- a/doc/tutorial/11_read_mapper/read_mapper_indexer_step1.cpp +++ b/doc/tutorial/11_read_mapper/read_mapper_indexer_step1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/11_read_mapper/read_mapper_indexer_step1.out.license b/doc/tutorial/11_read_mapper/read_mapper_indexer_step1.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/11_read_mapper/read_mapper_indexer_step1.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/11_read_mapper/read_mapper_indexer_step2.cpp b/doc/tutorial/11_read_mapper/read_mapper_indexer_step2.cpp index 223bdf298f..3971c24f26 100644 --- a/doc/tutorial/11_read_mapper/read_mapper_indexer_step2.cpp +++ b/doc/tutorial/11_read_mapper/read_mapper_indexer_step2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/doc/tutorial/11_read_mapper/read_mapper_indexer_step2.out.license b/doc/tutorial/11_read_mapper/read_mapper_indexer_step2.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/11_read_mapper/read_mapper_indexer_step2.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/11_read_mapper/read_mapper_indexer_step3.cpp b/doc/tutorial/11_read_mapper/read_mapper_indexer_step3.cpp index 58c3256a0e..f9575f3a5f 100644 --- a/doc/tutorial/11_read_mapper/read_mapper_indexer_step3.cpp +++ b/doc/tutorial/11_read_mapper/read_mapper_indexer_step3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #if SEQAN3_WITH_CEREAL //![complete] diff --git a/doc/tutorial/11_read_mapper/read_mapper_indexer_step3.out.license b/doc/tutorial/11_read_mapper/read_mapper_indexer_step3.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/11_read_mapper/read_mapper_indexer_step3.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/11_read_mapper/read_mapper_step1.cpp b/doc/tutorial/11_read_mapper/read_mapper_step1.cpp index 582f873d97..fe917c0c70 100644 --- a/doc/tutorial/11_read_mapper/read_mapper_step1.cpp +++ b/doc/tutorial/11_read_mapper/read_mapper_step1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/doc/tutorial/11_read_mapper/read_mapper_step1.out.license b/doc/tutorial/11_read_mapper/read_mapper_step1.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/11_read_mapper/read_mapper_step1.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/11_read_mapper/read_mapper_step2.cpp b/doc/tutorial/11_read_mapper/read_mapper_step2.cpp index 41455ae5a6..5cbbf8fbd3 100644 --- a/doc/tutorial/11_read_mapper/read_mapper_step2.cpp +++ b/doc/tutorial/11_read_mapper/read_mapper_step2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #if SEQAN3_WITH_CEREAL //![complete] diff --git a/doc/tutorial/11_read_mapper/read_mapper_step2.out.license b/doc/tutorial/11_read_mapper/read_mapper_step2.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/11_read_mapper/read_mapper_step2.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/11_read_mapper/read_mapper_step3.cpp b/doc/tutorial/11_read_mapper/read_mapper_step3.cpp index 3c9e292b75..ed5ccc65cf 100644 --- a/doc/tutorial/11_read_mapper/read_mapper_step3.cpp +++ b/doc/tutorial/11_read_mapper/read_mapper_step3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #if SEQAN3_WITH_CEREAL //![complete] diff --git a/doc/tutorial/11_read_mapper/read_mapper_step3.out.license b/doc/tutorial/11_read_mapper/read_mapper_step3.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/11_read_mapper/read_mapper_step3.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/doc/tutorial/11_read_mapper/read_mapper_step4.cpp b/doc/tutorial/11_read_mapper/read_mapper_step4.cpp index 432605fff6..84a87c2fdd 100644 --- a/doc/tutorial/11_read_mapper/read_mapper_step4.cpp +++ b/doc/tutorial/11_read_mapper/read_mapper_step4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #if SEQAN3_WITH_CEREAL //![complete] diff --git a/doc/tutorial/11_read_mapper/read_mapper_step4.out.license b/doc/tutorial/11_read_mapper/read_mapper_step4.out.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/doc/tutorial/11_read_mapper/read_mapper_step4.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp b/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp index 15d293f5ca..701395489f 100644 --- a/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp +++ b/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Includes the aligned_sequence and the related insert_gap and diff --git a/include/seqan3/alignment/aligned_sequence/all.hpp b/include/seqan3/alignment/aligned_sequence/all.hpp index c7b2fa5838..6ad214f8d4 100644 --- a/include/seqan3/alignment/aligned_sequence/all.hpp +++ b/include/seqan3/alignment/aligned_sequence/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alignment_aligned_sequence Alignment / Aligned Sequence submodule \endlink. diff --git a/include/seqan3/alignment/aligned_sequence/debug_stream_alignment.hpp b/include/seqan3/alignment/aligned_sequence/debug_stream_alignment.hpp index ed8bcac612..c78b1f920d 100644 --- a/include/seqan3/alignment/aligned_sequence/debug_stream_alignment.hpp +++ b/include/seqan3/alignment/aligned_sequence/debug_stream_alignment.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief The seqan3::debug_stream_type overload in order to print alignments. diff --git a/include/seqan3/alignment/all.hpp b/include/seqan3/alignment/all.hpp index e1972523d9..bc824680c9 100644 --- a/include/seqan3/alignment/all.hpp +++ b/include/seqan3/alignment/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alignment Alignment module \endlink. diff --git a/include/seqan3/alignment/cigar_conversion/alignment_from_cigar.hpp b/include/seqan3/alignment/cigar_conversion/alignment_from_cigar.hpp index 2682cc5089..7abf0c3aec 100644 --- a/include/seqan3/alignment/cigar_conversion/alignment_from_cigar.hpp +++ b/include/seqan3/alignment/cigar_conversion/alignment_from_cigar.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the function seqan3::alignment_from_cigar. diff --git a/include/seqan3/alignment/cigar_conversion/all.hpp b/include/seqan3/alignment/cigar_conversion/all.hpp index c04b58fcea..fd12367426 100644 --- a/include/seqan3/alignment/cigar_conversion/all.hpp +++ b/include/seqan3/alignment/cigar_conversion/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link cigar_conversion Alignment / CIGAR Conversion submodule \endlink. diff --git a/include/seqan3/alignment/cigar_conversion/cigar_from_alignment.hpp b/include/seqan3/alignment/cigar_conversion/cigar_from_alignment.hpp index 6718e0eccb..c1d4bd7d1f 100644 --- a/include/seqan3/alignment/cigar_conversion/cigar_from_alignment.hpp +++ b/include/seqan3/alignment/cigar_conversion/cigar_from_alignment.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the function seqan3::cigar_from_alignment and a helper struct seqan3::cigar_clipped_bases. diff --git a/include/seqan3/alignment/configuration/align_config_band.hpp b/include/seqan3/alignment/configuration/align_config_band.hpp index 69016cecc0..70f4a4aec8 100644 --- a/include/seqan3/alignment/configuration/align_config_band.hpp +++ b/include/seqan3/alignment/configuration/align_config_band.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::align_config_band. diff --git a/include/seqan3/alignment/configuration/align_config_debug.hpp b/include/seqan3/alignment/configuration/align_config_debug.hpp index 4d9c49d974..c50287d9d6 100644 --- a/include/seqan3/alignment/configuration/align_config_debug.hpp +++ b/include/seqan3/alignment/configuration/align_config_debug.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_cfg::detail::debug. diff --git a/include/seqan3/alignment/configuration/align_config_edit.hpp b/include/seqan3/alignment/configuration/align_config_edit.hpp index 46237aa6d1..a07fa445c4 100644 --- a/include/seqan3/alignment/configuration/align_config_edit.hpp +++ b/include/seqan3/alignment/configuration/align_config_edit.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_cfg::edit_scheme. diff --git a/include/seqan3/alignment/configuration/align_config_gap_cost_affine.hpp b/include/seqan3/alignment/configuration/align_config_gap_cost_affine.hpp index bcb2347217..45a787590c 100644 --- a/include/seqan3/alignment/configuration/align_config_gap_cost_affine.hpp +++ b/include/seqan3/alignment/configuration/align_config_gap_cost_affine.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_config::gap_cost_affine. diff --git a/include/seqan3/alignment/configuration/align_config_method.hpp b/include/seqan3/alignment/configuration/align_config_method.hpp index 780c7a4231..6cd68e2a24 100644 --- a/include/seqan3/alignment/configuration/align_config_method.hpp +++ b/include/seqan3/alignment/configuration/align_config_method.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides global and local alignment configurations. diff --git a/include/seqan3/alignment/configuration/align_config_min_score.hpp b/include/seqan3/alignment/configuration/align_config_min_score.hpp index 1fe5ee798c..e0c1624f8f 100644 --- a/include/seqan3/alignment/configuration/align_config_min_score.hpp +++ b/include/seqan3/alignment/configuration/align_config_min_score.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_cfg::min_score configuration. diff --git a/include/seqan3/alignment/configuration/align_config_on_result.hpp b/include/seqan3/alignment/configuration/align_config_on_result.hpp index 36f938ee19..a8c1f77d75 100644 --- a/include/seqan3/alignment/configuration/align_config_on_result.hpp +++ b/include/seqan3/alignment/configuration/align_config_on_result.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_cfg::on_result. diff --git a/include/seqan3/alignment/configuration/align_config_output.hpp b/include/seqan3/alignment/configuration/align_config_output.hpp index 44cb33c443..a534461d05 100644 --- a/include/seqan3/alignment/configuration/align_config_output.hpp +++ b/include/seqan3/alignment/configuration/align_config_output.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides configuration for alignment output. diff --git a/include/seqan3/alignment/configuration/align_config_parallel.hpp b/include/seqan3/alignment/configuration/align_config_parallel.hpp index 0209b7a7b8..e038a34962 100644 --- a/include/seqan3/alignment/configuration/align_config_parallel.hpp +++ b/include/seqan3/alignment/configuration/align_config_parallel.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_cfg::parallel configuration. diff --git a/include/seqan3/alignment/configuration/align_config_result_type.hpp b/include/seqan3/alignment/configuration/align_config_result_type.hpp index 56c99f9627..c32e24cac9 100644 --- a/include/seqan3/alignment/configuration/align_config_result_type.hpp +++ b/include/seqan3/alignment/configuration/align_config_result_type.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_cfg::detail::result_type. diff --git a/include/seqan3/alignment/configuration/align_config_score_type.hpp b/include/seqan3/alignment/configuration/align_config_score_type.hpp index 03a97722b8..4ffe7dd0c7 100644 --- a/include/seqan3/alignment/configuration/align_config_score_type.hpp +++ b/include/seqan3/alignment/configuration/align_config_score_type.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides alignment configuration seqan3::align_cfg::score_type. diff --git a/include/seqan3/alignment/configuration/align_config_scoring_scheme.hpp b/include/seqan3/alignment/configuration/align_config_scoring_scheme.hpp index b422707e76..3d51e31a12 100644 --- a/include/seqan3/alignment/configuration/align_config_scoring_scheme.hpp +++ b/include/seqan3/alignment/configuration/align_config_scoring_scheme.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_cfg::scoring_scheme. diff --git a/include/seqan3/alignment/configuration/align_config_vectorised.hpp b/include/seqan3/alignment/configuration/align_config_vectorised.hpp index e7d5f0a937..233e2a11ce 100644 --- a/include/seqan3/alignment/configuration/align_config_vectorised.hpp +++ b/include/seqan3/alignment/configuration/align_config_vectorised.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::align_cfg::vectorised configuration. diff --git a/include/seqan3/alignment/configuration/all.hpp b/include/seqan3/alignment/configuration/all.hpp index 8f6e264a12..c5a33de99d 100644 --- a/include/seqan3/alignment/configuration/all.hpp +++ b/include/seqan3/alignment/configuration/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alignment_configuration Alignment / Configuration submodule \endlink. diff --git a/include/seqan3/alignment/configuration/detail.hpp b/include/seqan3/alignment/configuration/detail.hpp index 2d5b081735..9190dc48cd 100644 --- a/include/seqan3/alignment/configuration/detail.hpp +++ b/include/seqan3/alignment/configuration/detail.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides some utility functions for the alignment configurations. diff --git a/include/seqan3/alignment/decorator/all.hpp b/include/seqan3/alignment/decorator/all.hpp index d6c9a06298..5bff34f54b 100644 --- a/include/seqan3/alignment/decorator/all.hpp +++ b/include/seqan3/alignment/decorator/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alignment_decorator Alignment / Decorator submodule \endlink. diff --git a/include/seqan3/alignment/decorator/gap_decorator.hpp b/include/seqan3/alignment/decorator/gap_decorator.hpp index 44e79ebe6d..5917c13dd9 100644 --- a/include/seqan3/alignment/decorator/gap_decorator.hpp +++ b/include/seqan3/alignment/decorator/gap_decorator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::gap_decorator. diff --git a/include/seqan3/alignment/detail/pairwise_alignment_concept.hpp b/include/seqan3/alignment/detail/pairwise_alignment_concept.hpp index 7ea37ae5ed..2b5971b168 100644 --- a/include/seqan3/alignment/detail/pairwise_alignment_concept.hpp +++ b/include/seqan3/alignment/detail/pairwise_alignment_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::pairwise_alignment and seqan3::detail::writable_pairwise_alignment. diff --git a/include/seqan3/alignment/exception.hpp b/include/seqan3/alignment/exception.hpp index 7023bb6d89..05ed755f89 100644 --- a/include/seqan3/alignment/exception.hpp +++ b/include/seqan3/alignment/exception.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Includes customized exception types for the \link alignment alignment module \endlink. diff --git a/include/seqan3/alignment/matrix/all.hpp b/include/seqan3/alignment/matrix/all.hpp index d1d70e2103..c52873f85c 100644 --- a/include/seqan3/alignment/matrix/all.hpp +++ b/include/seqan3/alignment/matrix/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alignment_matrix Alignment / Matrix submodule \endlink. diff --git a/include/seqan3/alignment/matrix/detail/advanceable_alignment_coordinate.hpp b/include/seqan3/alignment/matrix/detail/advanceable_alignment_coordinate.hpp index 31f16c1653..5100314105 100644 --- a/include/seqan3/alignment/matrix/detail/advanceable_alignment_coordinate.hpp +++ b/include/seqan3/alignment/matrix/detail/advanceable_alignment_coordinate.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp b/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp index e3b6c56eae..b707b685b8 100644 --- a/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp +++ b/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::affine_cell_proxy. diff --git a/include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp b/include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp index 1cb5fa262e..cea914b071 100644 --- a/include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp +++ b/include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::aligned_sequence_builder. diff --git a/include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp b/include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp index ae23753604..dcf54def2f 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_matrix_column_major_range_base. diff --git a/include/seqan3/alignment/matrix/detail/alignment_optimum.hpp b/include/seqan3/alignment/matrix/detail/alignment_optimum.hpp index 4c93f34935..854f9d5e16 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_optimum.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_optimum.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_optimum. diff --git a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp index dfc088c726..c7fdd8e218 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_score_matrix_one_column. diff --git a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp index 6a1a3619e6..ecc5365c7b 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_score_matrix_one_column_banded. diff --git a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp index aa9fdb7338..738d9e6ca3 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_score_matrix_one_column_base. diff --git a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp index 68bb351d38..6242d61017 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_score_matrix_proxy. diff --git a/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_base.hpp b/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_base.hpp index 5b19869c48..421094c0c3 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_base.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_trace_matrix_base. diff --git a/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp b/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp index 064aefbe06..1f8050f073 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_trace_matrix_full. diff --git a/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp b/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp index ee050287eb..3b1ff88759 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_trace_matrix_full_banded. diff --git a/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_proxy.hpp b/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_proxy.hpp index bfd20902c8..890f0faa1b 100644 --- a/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_proxy.hpp +++ b/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_proxy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_trace_matrix_proxy. diff --git a/include/seqan3/alignment/matrix/detail/all.hpp b/include/seqan3/alignment/matrix/detail/all.hpp index c8cbc6ddeb..0348ac4d0c 100644 --- a/include/seqan3/alignment/matrix/detail/all.hpp +++ b/include/seqan3/alignment/matrix/detail/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the detail block of the \cond DEV \link alignment_matrix Alignment / Matrix submodule \endlink \endcond. diff --git a/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp b/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp index 8d38644fc1..150e30a114 100644 --- a/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp +++ b/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::combined_score_and_trace_matrix. diff --git a/include/seqan3/alignment/matrix/detail/coordinate_matrix.hpp b/include/seqan3/alignment/matrix/detail/coordinate_matrix.hpp index 37d2bf8633..cfd5bb1250 100644 --- a/include/seqan3/alignment/matrix/detail/coordinate_matrix.hpp +++ b/include/seqan3/alignment/matrix/detail/coordinate_matrix.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::coordinate_matrix. diff --git a/include/seqan3/alignment/matrix/detail/debug_matrix.hpp b/include/seqan3/alignment/matrix/detail/debug_matrix.hpp index 96264f3bc6..65aced0964 100644 --- a/include/seqan3/alignment/matrix/detail/debug_matrix.hpp +++ b/include/seqan3/alignment/matrix/detail/debug_matrix.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alignment/matrix/detail/edit_distance_score_matrix_full.hpp b/include/seqan3/alignment/matrix/detail/edit_distance_score_matrix_full.hpp index 631e53186e..94d24ea383 100644 --- a/include/seqan3/alignment/matrix/detail/edit_distance_score_matrix_full.hpp +++ b/include/seqan3/alignment/matrix/detail/edit_distance_score_matrix_full.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alignment/matrix/detail/edit_distance_trace_matrix_full.hpp b/include/seqan3/alignment/matrix/detail/edit_distance_trace_matrix_full.hpp index 3fc9ed6137..bce499c860 100644 --- a/include/seqan3/alignment/matrix/detail/edit_distance_trace_matrix_full.hpp +++ b/include/seqan3/alignment/matrix/detail/edit_distance_trace_matrix_full.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alignment/matrix/detail/matrix_concept.hpp b/include/seqan3/alignment/matrix/detail/matrix_concept.hpp index 30e122e654..23b12c031b 100644 --- a/include/seqan3/alignment/matrix/detail/matrix_concept.hpp +++ b/include/seqan3/alignment/matrix/detail/matrix_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp b/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp index fd6406447b..c27a8d7814 100644 --- a/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp +++ b/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::matrix_index, seqan3::detail::matrix_coordinate and associated strong types. diff --git a/include/seqan3/alignment/matrix/detail/row_wise_matrix.hpp b/include/seqan3/alignment/matrix/detail/row_wise_matrix.hpp index 56fc995d5d..2a15917632 100644 --- a/include/seqan3/alignment/matrix/detail/row_wise_matrix.hpp +++ b/include/seqan3/alignment/matrix/detail/row_wise_matrix.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp b/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp index 8103ece919..0c986c62d2 100644 --- a/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp +++ b/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::score_matrix_single_column. diff --git a/include/seqan3/alignment/matrix/detail/trace_directions.hpp b/include/seqan3/alignment/matrix/detail/trace_directions.hpp index 9163978560..5778cefbbc 100644 --- a/include/seqan3/alignment/matrix/detail/trace_directions.hpp +++ b/include/seqan3/alignment/matrix/detail/trace_directions.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alignment/matrix/detail/trace_iterator.hpp b/include/seqan3/alignment/matrix/detail/trace_iterator.hpp index b94bdbe129..e1726e2d74 100644 --- a/include/seqan3/alignment/matrix/detail/trace_iterator.hpp +++ b/include/seqan3/alignment/matrix/detail/trace_iterator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::trace_iterator. diff --git a/include/seqan3/alignment/matrix/detail/trace_iterator_banded.hpp b/include/seqan3/alignment/matrix/detail/trace_iterator_banded.hpp index 368ce49f35..5787f13721 100644 --- a/include/seqan3/alignment/matrix/detail/trace_iterator_banded.hpp +++ b/include/seqan3/alignment/matrix/detail/trace_iterator_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::trace_iterator_banded. diff --git a/include/seqan3/alignment/matrix/detail/trace_iterator_base.hpp b/include/seqan3/alignment/matrix/detail/trace_iterator_base.hpp index 1f6c0b4740..df0a74c6b0 100644 --- a/include/seqan3/alignment/matrix/detail/trace_iterator_base.hpp +++ b/include/seqan3/alignment/matrix/detail/trace_iterator_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::trace_iterator_base. diff --git a/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp b/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp index 5f2718e036..909f4627ba 100644 --- a/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp +++ b/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::trace_matrix_full. diff --git a/include/seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp b/include/seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp index 993ed1d9f6..7cc92f125f 100644 --- a/include/seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp +++ b/include/seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::two_dimensional_matrix. diff --git a/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_base.hpp b/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_base.hpp index a702e7f482..5e758c6d58 100644 --- a/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_base.hpp +++ b/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::two_dimensional_matrix_iterator_base. diff --git a/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_concept.hpp b/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_concept.hpp index e385a7b4a9..b2638c3121 100644 --- a/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_concept.hpp +++ b/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::two_dimensional_matrix_iterator. diff --git a/include/seqan3/alignment/pairwise/align_pairwise.hpp b/include/seqan3/alignment/pairwise/align_pairwise.hpp index 4d8f563818..a7018c8ba6 100644 --- a/include/seqan3/alignment/pairwise/align_pairwise.hpp +++ b/include/seqan3/alignment/pairwise/align_pairwise.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides pairwise alignment function. diff --git a/include/seqan3/alignment/pairwise/align_result_selector.hpp b/include/seqan3/alignment/pairwise/align_result_selector.hpp index f6f8800db7..9629aa8ac6 100644 --- a/include/seqan3/alignment/pairwise/align_result_selector.hpp +++ b/include/seqan3/alignment/pairwise/align_result_selector.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::align_result_selector. diff --git a/include/seqan3/alignment/pairwise/alignment_algorithm.hpp b/include/seqan3/alignment/pairwise/alignment_algorithm.hpp index 60b4dd113d..c5c5718ddf 100644 --- a/include/seqan3/alignment/pairwise/alignment_algorithm.hpp +++ b/include/seqan3/alignment/pairwise/alignment_algorithm.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_algorithm. diff --git a/include/seqan3/alignment/pairwise/alignment_configurator.hpp b/include/seqan3/alignment/pairwise/alignment_configurator.hpp index 459253fc20..c7c2d57b2d 100644 --- a/include/seqan3/alignment/pairwise/alignment_configurator.hpp +++ b/include/seqan3/alignment/pairwise/alignment_configurator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_selector. diff --git a/include/seqan3/alignment/pairwise/alignment_result.hpp b/include/seqan3/alignment/pairwise/alignment_result.hpp index bed73123db..a215e07d33 100644 --- a/include/seqan3/alignment/pairwise/alignment_result.hpp +++ b/include/seqan3/alignment/pairwise/alignment_result.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::alignment_result. diff --git a/include/seqan3/alignment/pairwise/all.hpp b/include/seqan3/alignment/pairwise/all.hpp index 16437fa701..b9c2bdf696 100644 --- a/include/seqan3/alignment/pairwise/all.hpp +++ b/include/seqan3/alignment/pairwise/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alignment_pairwise Alignment / Pairwise submodule \endlink. diff --git a/include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp b/include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp index c1b7f10fa5..c6db1f8f29 100644 --- a/include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp +++ b/include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_algorithm_state. diff --git a/include/seqan3/alignment/pairwise/detail/concept.hpp b/include/seqan3/alignment/pairwise/detail/concept.hpp index 37392ca1a8..bdd4dba3f3 100644 --- a/include/seqan3/alignment/pairwise/detail/concept.hpp +++ b/include/seqan3/alignment/pairwise/detail/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides concepts needed internally for the alignment algorithms. diff --git a/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp b/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp index c702f74152..dc14233720 100644 --- a/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp +++ b/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::pairwise_alignment_algorithm. diff --git a/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp b/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp index f0769a1cf4..ac972a067d 100644 --- a/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp +++ b/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::pairwise_alignment_algorithm. diff --git a/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion.hpp b/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion.hpp index 531db16c32..224fa654af 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_affine_gap_recursion. diff --git a/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp b/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp index f5249d8620..0205abe6d0 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_affine_gap_recursion_banded. diff --git a/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion.hpp b/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion.hpp index b876f84bd3..04f75544d6 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_affine_gap_with_trace_recursion. diff --git a/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion_banded.hpp b/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion_banded.hpp index c6d668c26e..adad4572f8 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion_banded.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_affine_gap_with_trace_recursion_banded. diff --git a/include/seqan3/alignment/pairwise/detail/policy_alignment_matrix.hpp b/include/seqan3/alignment/pairwise/detail/policy_alignment_matrix.hpp index 6776bf54fc..5ad4ff881f 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_alignment_matrix.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_alignment_matrix.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_alignment_matrix. diff --git a/include/seqan3/alignment/pairwise/detail/policy_alignment_result_builder.hpp b/include/seqan3/alignment/pairwise/detail/policy_alignment_result_builder.hpp index bb69512716..f5f41c5c6c 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_alignment_result_builder.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_alignment_result_builder.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_alignment_result_builder. diff --git a/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker.hpp b/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker.hpp index 76c2bcb79b..a36dbd8815 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_optimum_tracker. diff --git a/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp b/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp index 83b76ffb95..49ed9270f4 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_optimum_tracker_simd. diff --git a/include/seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp b/include/seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp index 9bc4aaa982..8f37d544ce 100644 --- a/include/seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp +++ b/include/seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::policy_scoring_scheme. diff --git a/include/seqan3/alignment/pairwise/detail/type_traits.hpp b/include/seqan3/alignment/pairwise/detail/type_traits.hpp index 538dfd4242..e1630bbba8 100644 --- a/include/seqan3/alignment/pairwise/detail/type_traits.hpp +++ b/include/seqan3/alignment/pairwise/detail/type_traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides helper type traits for the configuration and execution of the alignment algorithm. diff --git a/include/seqan3/alignment/pairwise/edit_distance_algorithm.hpp b/include/seqan3/alignment/pairwise/edit_distance_algorithm.hpp index 9fe4cb8037..fe2d903939 100644 --- a/include/seqan3/alignment/pairwise/edit_distance_algorithm.hpp +++ b/include/seqan3/alignment/pairwise/edit_distance_algorithm.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::edit_distance_algorithm. diff --git a/include/seqan3/alignment/pairwise/edit_distance_fwd.hpp b/include/seqan3/alignment/pairwise/edit_distance_fwd.hpp index 6044da78ff..e7dda2784a 100644 --- a/include/seqan3/alignment/pairwise/edit_distance_fwd.hpp +++ b/include/seqan3/alignment/pairwise/edit_distance_fwd.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Forwards for seqan3::edit_distance_unbanded related types. diff --git a/include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp b/include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp index f56d00d849..af5c3c1bf8 100644 --- a/include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp +++ b/include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides a pairwise alignment algorithm for edit distance but without band. diff --git a/include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp b/include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp index a5a12a330e..18d59e42cb 100644 --- a/include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp +++ b/include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::affine_gap_init_policy. diff --git a/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp b/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp index 91a38a5291..196ac6d68a 100644 --- a/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp +++ b/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::affine_gap_policy. diff --git a/include/seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp b/include/seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp index c3ae94d5f7..29c85083b5 100644 --- a/include/seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp +++ b/include/seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::alignment_matrix_policy. diff --git a/include/seqan3/alignment/pairwise/policy/all.hpp b/include/seqan3/alignment/pairwise/policy/all.hpp index d50ee813a3..bba66692e1 100644 --- a/include/seqan3/alignment/pairwise/policy/all.hpp +++ b/include/seqan3/alignment/pairwise/policy/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause //!\cond DEV /*!\file diff --git a/include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp b/include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp index 9e9d5d4d11..1cab4d7975 100644 --- a/include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp +++ b/include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::find_optimum_policy. diff --git a/include/seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp b/include/seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp index acf562c826..48a4bc7e0d 100644 --- a/include/seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp +++ b/include/seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::scoring_scheme_policy. diff --git a/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp b/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp index 18e46fe5bc..1e4e84ca70 100644 --- a/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp +++ b/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::simd_affine_gap_policy. diff --git a/include/seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp b/include/seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp index 318756a57d..83f61d4f34 100644 --- a/include/seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp +++ b/include/seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::simd_find_optimum_policy. diff --git a/include/seqan3/alignment/scoring/all.hpp b/include/seqan3/alignment/scoring/all.hpp index f534315830..fc357bd200 100644 --- a/include/seqan3/alignment/scoring/all.hpp +++ b/include/seqan3/alignment/scoring/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alignment_scoring Alignment / Scoring submodule \endlink. diff --git a/include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp b/include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp index 50713c3514..3ae2ebebe5 100644 --- a/include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp +++ b/include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::aminoacid_scoring_scheme. diff --git a/include/seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp b/include/seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp index ddcf52bc0f..56f0bf7f2d 100644 --- a/include/seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp +++ b/include/seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::simd_match_mismatch_scoring_scheme. diff --git a/include/seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp b/include/seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp index 43837e846c..993d683e2c 100644 --- a/include/seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp +++ b/include/seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::simd_matrix_scoring_scheme. diff --git a/include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp b/include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp index bce4822d23..0b65da838b 100644 --- a/include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp +++ b/include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::nucleotide_scoring_scheme. diff --git a/include/seqan3/alignment/scoring/scoring_scheme_base.hpp b/include/seqan3/alignment/scoring/scoring_scheme_base.hpp index 2d0daaea37..148b618007 100644 --- a/include/seqan3/alignment/scoring/scoring_scheme_base.hpp +++ b/include/seqan3/alignment/scoring/scoring_scheme_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::scoring_scheme_base. diff --git a/include/seqan3/alignment/scoring/scoring_scheme_concept.hpp b/include/seqan3/alignment/scoring/scoring_scheme_concept.hpp index e1c0f8b997..97ac1212fb 100644 --- a/include/seqan3/alignment/scoring/scoring_scheme_concept.hpp +++ b/include/seqan3/alignment/scoring/scoring_scheme_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::scoring_scheme_for. diff --git a/include/seqan3/alphabet/adaptation/all.hpp b/include/seqan3/alphabet/adaptation/all.hpp index 6c09db2c4b..c68156fdab 100644 --- a/include/seqan3/alphabet/adaptation/all.hpp +++ b/include/seqan3/alphabet/adaptation/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/adaptation/char.hpp b/include/seqan3/alphabet/adaptation/char.hpp index df124dfc00..ae78cc5634 100644 --- a/include/seqan3/alphabet/adaptation/char.hpp +++ b/include/seqan3/alphabet/adaptation/char.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/adaptation/uint.hpp b/include/seqan3/alphabet/adaptation/uint.hpp index 9958fe6c3d..99c1c77676 100644 --- a/include/seqan3/alphabet/adaptation/uint.hpp +++ b/include/seqan3/alphabet/adaptation/uint.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/all.hpp b/include/seqan3/alphabet/all.hpp index 2f3410f715..5ef06e2d8a 100644 --- a/include/seqan3/alphabet/all.hpp +++ b/include/seqan3/alphabet/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/alphabet_base.hpp b/include/seqan3/alphabet/alphabet_base.hpp index 216e1794d2..212f96c827 100644 --- a/include/seqan3/alphabet/alphabet_base.hpp +++ b/include/seqan3/alphabet/alphabet_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/aminoacid/aa10li.hpp b/include/seqan3/alphabet/aminoacid/aa10li.hpp index 20d6bfac0b..9ca85dbce3 100644 --- a/include/seqan3/alphabet/aminoacid/aa10li.hpp +++ b/include/seqan3/alphabet/aminoacid/aa10li.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/aminoacid/aa10murphy.hpp b/include/seqan3/alphabet/aminoacid/aa10murphy.hpp index 3f885e9e49..95aff9e0b1 100644 --- a/include/seqan3/alphabet/aminoacid/aa10murphy.hpp +++ b/include/seqan3/alphabet/aminoacid/aa10murphy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/aminoacid/aa20.hpp b/include/seqan3/alphabet/aminoacid/aa20.hpp index a180e07475..209307da62 100644 --- a/include/seqan3/alphabet/aminoacid/aa20.hpp +++ b/include/seqan3/alphabet/aminoacid/aa20.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joshua Kim diff --git a/include/seqan3/alphabet/aminoacid/aa27.hpp b/include/seqan3/alphabet/aminoacid/aa27.hpp index 4785f26bd4..1505aeae9a 100644 --- a/include/seqan3/alphabet/aminoacid/aa27.hpp +++ b/include/seqan3/alphabet/aminoacid/aa27.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/aminoacid/all.hpp b/include/seqan3/alphabet/aminoacid/all.hpp index 9fea627586..027cdfc24e 100644 --- a/include/seqan3/alphabet/aminoacid/all.hpp +++ b/include/seqan3/alphabet/aminoacid/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp b/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp index cf99203ba3..e2414d42a2 100644 --- a/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp +++ b/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/aminoacid/concept.hpp b/include/seqan3/alphabet/aminoacid/concept.hpp index ab9d6b0a61..edff7c7fd0 100644 --- a/include/seqan3/alphabet/aminoacid/concept.hpp +++ b/include/seqan3/alphabet/aminoacid/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/aminoacid/translation.hpp b/include/seqan3/alphabet/aminoacid/translation.hpp index 4071349bd6..0754e41fd7 100644 --- a/include/seqan3/alphabet/aminoacid/translation.hpp +++ b/include/seqan3/alphabet/aminoacid/translation.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/aminoacid/translation_details.hpp b/include/seqan3/alphabet/aminoacid/translation_details.hpp index 729645495e..0074113640 100644 --- a/include/seqan3/alphabet/aminoacid/translation_details.hpp +++ b/include/seqan3/alphabet/aminoacid/translation_details.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/aminoacid/translation_genetic_code.hpp b/include/seqan3/alphabet/aminoacid/translation_genetic_code.hpp index 6bef619886..61430f6f7a 100644 --- a/include/seqan3/alphabet/aminoacid/translation_genetic_code.hpp +++ b/include/seqan3/alphabet/aminoacid/translation_genetic_code.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/cigar/all.hpp b/include/seqan3/alphabet/cigar/all.hpp index fa365ac451..9cbf4dbabc 100644 --- a/include/seqan3/alphabet/cigar/all.hpp +++ b/include/seqan3/alphabet/cigar/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joshua Kim diff --git a/include/seqan3/alphabet/cigar/cigar.hpp b/include/seqan3/alphabet/cigar/cigar.hpp index 5b24ba41af..1463901d7c 100644 --- a/include/seqan3/alphabet/cigar/cigar.hpp +++ b/include/seqan3/alphabet/cigar/cigar.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::cigar alphabet. diff --git a/include/seqan3/alphabet/cigar/exposition_only/cigar_operation.hpp b/include/seqan3/alphabet/cigar/exposition_only/cigar_operation.hpp index 89cc68ae3b..196c4bd14e 100644 --- a/include/seqan3/alphabet/cigar/exposition_only/cigar_operation.hpp +++ b/include/seqan3/alphabet/cigar/exposition_only/cigar_operation.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Introduces the seqan3::exposition_only::cigar_operation alphabet. diff --git a/include/seqan3/alphabet/composite/all.hpp b/include/seqan3/alphabet/composite/all.hpp index 46fe9cbc50..dd74143f3e 100644 --- a/include/seqan3/alphabet/composite/all.hpp +++ b/include/seqan3/alphabet/composite/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp b/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp index 49838cf2e1..2c305aed4b 100644 --- a/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp +++ b/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/composite/alphabet_variant.hpp b/include/seqan3/alphabet/composite/alphabet_variant.hpp index fd7444d055..f3c91dcf24 100644 --- a/include/seqan3/alphabet/composite/alphabet_variant.hpp +++ b/include/seqan3/alphabet/composite/alphabet_variant.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alphabet/composite/detail.hpp b/include/seqan3/alphabet/composite/detail.hpp index a8e0cf85d0..c9c0483bd8 100644 --- a/include/seqan3/alphabet/composite/detail.hpp +++ b/include/seqan3/alphabet/composite/detail.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/composite/semialphabet_any.hpp b/include/seqan3/alphabet/composite/semialphabet_any.hpp index 2bb2f1f1f8..37146f6430 100644 --- a/include/seqan3/alphabet/composite/semialphabet_any.hpp +++ b/include/seqan3/alphabet/composite/semialphabet_any.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/concept.hpp b/include/seqan3/alphabet/concept.hpp index 8be04a8a6e..9a5af2a75b 100644 --- a/include/seqan3/alphabet/concept.hpp +++ b/include/seqan3/alphabet/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Core alphabet concept and free function/type trait wrappers. diff --git a/include/seqan3/alphabet/container/all.hpp b/include/seqan3/alphabet/container/all.hpp index c409470098..0dff238df3 100644 --- a/include/seqan3/alphabet/container/all.hpp +++ b/include/seqan3/alphabet/container/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alphabet/container/bitpacked_sequence.hpp b/include/seqan3/alphabet/container/bitpacked_sequence.hpp index 61e0c14af8..2b479b5af9 100644 --- a/include/seqan3/alphabet/container/bitpacked_sequence.hpp +++ b/include/seqan3/alphabet/container/bitpacked_sequence.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::bitpacked_sequence. diff --git a/include/seqan3/alphabet/container/concatenated_sequences.hpp b/include/seqan3/alphabet/container/concatenated_sequences.hpp index 8d60abebd3..040ccefd96 100644 --- a/include/seqan3/alphabet/container/concatenated_sequences.hpp +++ b/include/seqan3/alphabet/container/concatenated_sequences.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::concatenated_sequences. diff --git a/include/seqan3/alphabet/detail/alphabet_proxy.hpp b/include/seqan3/alphabet/detail/alphabet_proxy.hpp index f926b65b42..7be8044a8a 100644 --- a/include/seqan3/alphabet/detail/alphabet_proxy.hpp +++ b/include/seqan3/alphabet/detail/alphabet_proxy.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/detail/concept.hpp b/include/seqan3/alphabet/detail/concept.hpp index 7be7e6269d..e1c47c7ebd 100644 --- a/include/seqan3/alphabet/detail/concept.hpp +++ b/include/seqan3/alphabet/detail/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/alphabet/detail/convert.hpp b/include/seqan3/alphabet/detail/convert.hpp index cb251faa54..c3ebda2a54 100644 --- a/include/seqan3/alphabet/detail/convert.hpp +++ b/include/seqan3/alphabet/detail/convert.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\cond DEV * \file diff --git a/include/seqan3/alphabet/detail/debug_stream_alphabet.hpp b/include/seqan3/alphabet/detail/debug_stream_alphabet.hpp index c85a41d4f1..9b7e8e0fe7 100644 --- a/include/seqan3/alphabet/detail/debug_stream_alphabet.hpp +++ b/include/seqan3/alphabet/detail/debug_stream_alphabet.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/exception.hpp b/include/seqan3/alphabet/exception.hpp index 0638f712c8..1d329641be 100644 --- a/include/seqan3/alphabet/exception.hpp +++ b/include/seqan3/alphabet/exception.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/gap/all.hpp b/include/seqan3/alphabet/gap/all.hpp index c95b71a417..0806b2f030 100644 --- a/include/seqan3/alphabet/gap/all.hpp +++ b/include/seqan3/alphabet/gap/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alphabet/gap/gap.hpp b/include/seqan3/alphabet/gap/gap.hpp index bc81fa96b1..99a883b8a3 100644 --- a/include/seqan3/alphabet/gap/gap.hpp +++ b/include/seqan3/alphabet/gap/gap.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alphabet/gap/gapped.hpp b/include/seqan3/alphabet/gap/gapped.hpp index 3d7c76f953..c47d7657e2 100644 --- a/include/seqan3/alphabet/gap/gapped.hpp +++ b/include/seqan3/alphabet/gap/gapped.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alphabet/hash.hpp b/include/seqan3/alphabet/hash.hpp index 75543a9945..eaf2049bad 100644 --- a/include/seqan3/alphabet/hash.hpp +++ b/include/seqan3/alphabet/hash.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/alphabet/mask/all.hpp b/include/seqan3/alphabet/mask/all.hpp index b54e11f91b..9947b1ec58 100644 --- a/include/seqan3/alphabet/mask/all.hpp +++ b/include/seqan3/alphabet/mask/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alphabet_mask Alphabet / Mask submodule \endlink. diff --git a/include/seqan3/alphabet/mask/mask.hpp b/include/seqan3/alphabet/mask/mask.hpp index 8429a88e4a..0b105d464d 100644 --- a/include/seqan3/alphabet/mask/mask.hpp +++ b/include/seqan3/alphabet/mask/mask.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Create a mask composite which can be applied with another alphabet. diff --git a/include/seqan3/alphabet/mask/masked.hpp b/include/seqan3/alphabet/mask/masked.hpp index 990c7bffdb..b492267c7b 100644 --- a/include/seqan3/alphabet/mask/masked.hpp +++ b/include/seqan3/alphabet/mask/masked.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Extends a given alphabet with the mask alphabet. diff --git a/include/seqan3/alphabet/nucleotide/all.hpp b/include/seqan3/alphabet/nucleotide/all.hpp index 57d3cecc41..b1d43f18c4 100644 --- a/include/seqan3/alphabet/nucleotide/all.hpp +++ b/include/seqan3/alphabet/nucleotide/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/nucleotide/concept.hpp b/include/seqan3/alphabet/nucleotide/concept.hpp index 8df8e3c4af..76586b69be 100644 --- a/include/seqan3/alphabet/nucleotide/concept.hpp +++ b/include/seqan3/alphabet/nucleotide/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/nucleotide/dna15.hpp b/include/seqan3/alphabet/nucleotide/dna15.hpp index 7a82c5bf7d..002dfd454b 100644 --- a/include/seqan3/alphabet/nucleotide/dna15.hpp +++ b/include/seqan3/alphabet/nucleotide/dna15.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/nucleotide/dna16sam.hpp b/include/seqan3/alphabet/nucleotide/dna16sam.hpp index e61c40a6fa..388276a204 100644 --- a/include/seqan3/alphabet/nucleotide/dna16sam.hpp +++ b/include/seqan3/alphabet/nucleotide/dna16sam.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/alphabet/nucleotide/dna3bs.hpp b/include/seqan3/alphabet/nucleotide/dna3bs.hpp index 2f397a8339..b2150bf7b8 100644 --- a/include/seqan3/alphabet/nucleotide/dna3bs.hpp +++ b/include/seqan3/alphabet/nucleotide/dna3bs.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Sara Hetzel diff --git a/include/seqan3/alphabet/nucleotide/dna4.hpp b/include/seqan3/alphabet/nucleotide/dna4.hpp index c8efca3c1c..b13a34e31e 100644 --- a/include/seqan3/alphabet/nucleotide/dna4.hpp +++ b/include/seqan3/alphabet/nucleotide/dna4.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/nucleotide/dna5.hpp b/include/seqan3/alphabet/nucleotide/dna5.hpp index 403dc4c97e..1b7ab703fa 100644 --- a/include/seqan3/alphabet/nucleotide/dna5.hpp +++ b/include/seqan3/alphabet/nucleotide/dna5.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp b/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp index df3da4f4cb..f1c7bb0548 100644 --- a/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp +++ b/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/nucleotide/rna15.hpp b/include/seqan3/alphabet/nucleotide/rna15.hpp index 53ea18d99f..4e83835d89 100644 --- a/include/seqan3/alphabet/nucleotide/rna15.hpp +++ b/include/seqan3/alphabet/nucleotide/rna15.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/nucleotide/rna4.hpp b/include/seqan3/alphabet/nucleotide/rna4.hpp index ea2b330cb8..28e509b024 100644 --- a/include/seqan3/alphabet/nucleotide/rna4.hpp +++ b/include/seqan3/alphabet/nucleotide/rna4.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/nucleotide/rna5.hpp b/include/seqan3/alphabet/nucleotide/rna5.hpp index b6f4d09146..3f6c40e513 100644 --- a/include/seqan3/alphabet/nucleotide/rna5.hpp +++ b/include/seqan3/alphabet/nucleotide/rna5.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/quality/aliases.hpp b/include/seqan3/alphabet/quality/aliases.hpp index 3c04eecb49..4b2a04c4dc 100644 --- a/include/seqan3/alphabet/quality/aliases.hpp +++ b/include/seqan3/alphabet/quality/aliases.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/quality/all.hpp b/include/seqan3/alphabet/quality/all.hpp index 708112f750..9916fe0eff 100644 --- a/include/seqan3/alphabet/quality/all.hpp +++ b/include/seqan3/alphabet/quality/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marie Hoffmann diff --git a/include/seqan3/alphabet/quality/concept.hpp b/include/seqan3/alphabet/quality/concept.hpp index 3ac4fa3a3f..052b1faa7b 100644 --- a/include/seqan3/alphabet/quality/concept.hpp +++ b/include/seqan3/alphabet/quality/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marie Hoffmann diff --git a/include/seqan3/alphabet/quality/phred42.hpp b/include/seqan3/alphabet/quality/phred42.hpp index 14145a0d76..18afeb831f 100644 --- a/include/seqan3/alphabet/quality/phred42.hpp +++ b/include/seqan3/alphabet/quality/phred42.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marie Hoffmann diff --git a/include/seqan3/alphabet/quality/phred63.hpp b/include/seqan3/alphabet/quality/phred63.hpp index 4bc2c9744e..cb5397ea45 100644 --- a/include/seqan3/alphabet/quality/phred63.hpp +++ b/include/seqan3/alphabet/quality/phred63.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marie Hoffmann diff --git a/include/seqan3/alphabet/quality/phred68solexa.hpp b/include/seqan3/alphabet/quality/phred68solexa.hpp index e7a9f40aa2..5d8d85520e 100644 --- a/include/seqan3/alphabet/quality/phred68solexa.hpp +++ b/include/seqan3/alphabet/quality/phred68solexa.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marie Hoffmann diff --git a/include/seqan3/alphabet/quality/phred94.hpp b/include/seqan3/alphabet/quality/phred94.hpp index 30f660975a..d4102c58a4 100644 --- a/include/seqan3/alphabet/quality/phred94.hpp +++ b/include/seqan3/alphabet/quality/phred94.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Lydia Buntrock diff --git a/include/seqan3/alphabet/quality/phred_base.hpp b/include/seqan3/alphabet/quality/phred_base.hpp index f890dc3f20..636dccacf9 100644 --- a/include/seqan3/alphabet/quality/phred_base.hpp +++ b/include/seqan3/alphabet/quality/phred_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::phred42 quality scores. diff --git a/include/seqan3/alphabet/quality/qualified.hpp b/include/seqan3/alphabet/quality/qualified.hpp index 206f4d9632..85b9ed018e 100644 --- a/include/seqan3/alphabet/quality/qualified.hpp +++ b/include/seqan3/alphabet/quality/qualified.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/range/all.hpp b/include/seqan3/alphabet/range/all.hpp index 83273e8707..08ab39745d 100644 --- a/include/seqan3/alphabet/range/all.hpp +++ b/include/seqan3/alphabet/range/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/alphabet/range/hash.hpp b/include/seqan3/alphabet/range/hash.hpp index d75086ac4b..1b593d8e44 100644 --- a/include/seqan3/alphabet/range/hash.hpp +++ b/include/seqan3/alphabet/range/hash.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/alphabet/range/sequence.hpp b/include/seqan3/alphabet/range/sequence.hpp index 29de899870..923a002517 100644 --- a/include/seqan3/alphabet/range/sequence.hpp +++ b/include/seqan3/alphabet/range/sequence.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Additional non-standard concepts for ranges. diff --git a/include/seqan3/alphabet/structure/all.hpp b/include/seqan3/alphabet/structure/all.hpp index 0e25332537..1210861d9c 100644 --- a/include/seqan3/alphabet/structure/all.hpp +++ b/include/seqan3/alphabet/structure/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joerg Winkler diff --git a/include/seqan3/alphabet/structure/concept.hpp b/include/seqan3/alphabet/structure/concept.hpp index 6fabb0e733..9bacaf269b 100644 --- a/include/seqan3/alphabet/structure/concept.hpp +++ b/include/seqan3/alphabet/structure/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joerg Winkler diff --git a/include/seqan3/alphabet/structure/dot_bracket3.hpp b/include/seqan3/alphabet/structure/dot_bracket3.hpp index 8a1a5ea4be..764ee46270 100644 --- a/include/seqan3/alphabet/structure/dot_bracket3.hpp +++ b/include/seqan3/alphabet/structure/dot_bracket3.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joerg Winkler diff --git a/include/seqan3/alphabet/structure/dssp9.hpp b/include/seqan3/alphabet/structure/dssp9.hpp index 4d9c1fb999..b959131f72 100644 --- a/include/seqan3/alphabet/structure/dssp9.hpp +++ b/include/seqan3/alphabet/structure/dssp9.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joerg Winkler diff --git a/include/seqan3/alphabet/structure/structured_aa.hpp b/include/seqan3/alphabet/structure/structured_aa.hpp index 3383ac0c23..7519e07c7d 100644 --- a/include/seqan3/alphabet/structure/structured_aa.hpp +++ b/include/seqan3/alphabet/structure/structured_aa.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joerg Winkler diff --git a/include/seqan3/alphabet/structure/structured_rna.hpp b/include/seqan3/alphabet/structure/structured_rna.hpp index 424334d10a..8447483365 100644 --- a/include/seqan3/alphabet/structure/structured_rna.hpp +++ b/include/seqan3/alphabet/structure/structured_rna.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joerg Winkler diff --git a/include/seqan3/alphabet/structure/wuss.hpp b/include/seqan3/alphabet/structure/wuss.hpp index d24804d103..dc64017baa 100644 --- a/include/seqan3/alphabet/structure/wuss.hpp +++ b/include/seqan3/alphabet/structure/wuss.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joerg Winkler diff --git a/include/seqan3/alphabet/views/all.hpp b/include/seqan3/alphabet/views/all.hpp index 37ee6ba213..74a45469ef 100644 --- a/include/seqan3/alphabet/views/all.hpp +++ b/include/seqan3/alphabet/views/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link alphabet_views Alphabet / Views submodule \endlink. diff --git a/include/seqan3/alphabet/views/char_strictly_to.hpp b/include/seqan3/alphabet/views/char_strictly_to.hpp index ee4f44b738..23a3c21eb7 100644 --- a/include/seqan3/alphabet/views/char_strictly_to.hpp +++ b/include/seqan3/alphabet/views/char_strictly_to.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::char_strictly_to. diff --git a/include/seqan3/alphabet/views/char_to.hpp b/include/seqan3/alphabet/views/char_to.hpp index 68a6bd67d2..4e9bf58507 100644 --- a/include/seqan3/alphabet/views/char_to.hpp +++ b/include/seqan3/alphabet/views/char_to.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::char_to. diff --git a/include/seqan3/alphabet/views/complement.hpp b/include/seqan3/alphabet/views/complement.hpp index 4f7518bb46..8d0d300786 100644 --- a/include/seqan3/alphabet/views/complement.hpp +++ b/include/seqan3/alphabet/views/complement.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/alphabet/views/rank_to.hpp b/include/seqan3/alphabet/views/rank_to.hpp index b05f31962d..0b0556244b 100644 --- a/include/seqan3/alphabet/views/rank_to.hpp +++ b/include/seqan3/alphabet/views/rank_to.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::rank_to. diff --git a/include/seqan3/alphabet/views/to_char.hpp b/include/seqan3/alphabet/views/to_char.hpp index 86be00192d..d12aa82c8a 100644 --- a/include/seqan3/alphabet/views/to_char.hpp +++ b/include/seqan3/alphabet/views/to_char.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::to_char. diff --git a/include/seqan3/alphabet/views/to_rank.hpp b/include/seqan3/alphabet/views/to_rank.hpp index aa7f896319..0e356866ce 100644 --- a/include/seqan3/alphabet/views/to_rank.hpp +++ b/include/seqan3/alphabet/views/to_rank.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::to_rank. diff --git a/include/seqan3/alphabet/views/translate.hpp b/include/seqan3/alphabet/views/translate.hpp index 103a0a661e..2a130e8c3b 100644 --- a/include/seqan3/alphabet/views/translate.hpp +++ b/include/seqan3/alphabet/views/translate.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::translate and seqan3::views::translate_single. diff --git a/include/seqan3/alphabet/views/translate_join.hpp b/include/seqan3/alphabet/views/translate_join.hpp index 4d6b2f15ae..0f85c1f6fe 100644 --- a/include/seqan3/alphabet/views/translate_join.hpp +++ b/include/seqan3/alphabet/views/translate_join.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::translate_join. diff --git a/include/seqan3/alphabet/views/trim_quality.hpp b/include/seqan3/alphabet/views/trim_quality.hpp index 5f0f62fc64..9774d2f9e5 100644 --- a/include/seqan3/alphabet/views/trim_quality.hpp +++ b/include/seqan3/alphabet/views/trim_quality.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::trim_quality. diff --git a/include/seqan3/alphabet/views/validate_char_for.hpp b/include/seqan3/alphabet/views/validate_char_for.hpp index ff557a99e0..233cd0bbc2 100644 --- a/include/seqan3/alphabet/views/validate_char_for.hpp +++ b/include/seqan3/alphabet/views/validate_char_for.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::validate_char_for. diff --git a/include/seqan3/argument_parser/all.hpp b/include/seqan3/argument_parser/all.hpp index 4e6bd8f53c..8d056ea7ac 100644 --- a/include/seqan3/argument_parser/all.hpp +++ b/include/seqan3/argument_parser/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/argument_parser.hpp b/include/seqan3/argument_parser/argument_parser.hpp index fa2c05c1f0..8c29b2d281 100644 --- a/include/seqan3/argument_parser/argument_parser.hpp +++ b/include/seqan3/argument_parser/argument_parser.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/auxiliary.hpp b/include/seqan3/argument_parser/auxiliary.hpp index 53fb59b96d..a83bdd8c37 100644 --- a/include/seqan3/argument_parser/auxiliary.hpp +++ b/include/seqan3/argument_parser/auxiliary.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/detail/concept.hpp b/include/seqan3/argument_parser/detail/concept.hpp index cf1df85a25..f74343b15e 100644 --- a/include/seqan3/argument_parser/detail/concept.hpp +++ b/include/seqan3/argument_parser/detail/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/detail/format_base.hpp b/include/seqan3/argument_parser/detail/format_base.hpp index 656e30dafa..736c68a00d 100644 --- a/include/seqan3/argument_parser/detail/format_base.hpp +++ b/include/seqan3/argument_parser/detail/format_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/detail/format_help.hpp b/include/seqan3/argument_parser/detail/format_help.hpp index 8485a162a4..21125fafe0 100644 --- a/include/seqan3/argument_parser/detail/format_help.hpp +++ b/include/seqan3/argument_parser/detail/format_help.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/detail/format_html.hpp b/include/seqan3/argument_parser/detail/format_html.hpp index dd020a183c..79e53bd5f6 100644 --- a/include/seqan3/argument_parser/detail/format_html.hpp +++ b/include/seqan3/argument_parser/detail/format_html.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/detail/format_man.hpp b/include/seqan3/argument_parser/detail/format_man.hpp index ff95999982..c167225560 100644 --- a/include/seqan3/argument_parser/detail/format_man.hpp +++ b/include/seqan3/argument_parser/detail/format_man.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/detail/format_parse.hpp b/include/seqan3/argument_parser/detail/format_parse.hpp index 3933567154..67933e45a0 100644 --- a/include/seqan3/argument_parser/detail/format_parse.hpp +++ b/include/seqan3/argument_parser/detail/format_parse.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/detail/terminal.hpp b/include/seqan3/argument_parser/detail/terminal.hpp index 6e190d92c7..07791e8d51 100644 --- a/include/seqan3/argument_parser/detail/terminal.hpp +++ b/include/seqan3/argument_parser/detail/terminal.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/detail/version_check.hpp b/include/seqan3/argument_parser/detail/version_check.hpp index 5aaac1f43d..4175f09834 100644 --- a/include/seqan3/argument_parser/detail/version_check.hpp +++ b/include/seqan3/argument_parser/detail/version_check.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/exceptions.hpp b/include/seqan3/argument_parser/exceptions.hpp index 41e9ad6b43..b50640643c 100644 --- a/include/seqan3/argument_parser/exceptions.hpp +++ b/include/seqan3/argument_parser/exceptions.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/argument_parser/validators.hpp b/include/seqan3/argument_parser/validators.hpp index 9e27b72395..d2384dcc82 100644 --- a/include/seqan3/argument_parser/validators.hpp +++ b/include/seqan3/argument_parser/validators.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/contrib/README.md b/include/seqan3/contrib/README.md index 53b1786882..e3d1986722 100644 --- a/include/seqan3/contrib/README.md +++ b/include/seqan3/contrib/README.md @@ -1,3 +1,9 @@ + + The `std` directory is a git subtree and includes the content of https://github.com/seqan/seqan-std. For a general overview regarding `git subtree`, see, for example, https://www.atlassian.com/git/tutorials/git-subtree. diff --git a/include/seqan3/contrib/parallel/buffer_queue.hpp b/include/seqan3/contrib/parallel/buffer_queue.hpp index ef89bdc98c..4be9876da5 100644 --- a/include/seqan3/contrib/parallel/buffer_queue.hpp +++ b/include/seqan3/contrib/parallel/buffer_queue.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::buffer_queue. diff --git a/include/seqan3/contrib/parallel/serialised_resource_pool.hpp b/include/seqan3/contrib/parallel/serialised_resource_pool.hpp index 53dbc873dd..6b11fb7249 100644 --- a/include/seqan3/contrib/parallel/serialised_resource_pool.hpp +++ b/include/seqan3/contrib/parallel/serialised_resource_pool.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides helper structs from SeqAn2 for the bgzf_ostream. diff --git a/include/seqan3/contrib/parallel/suspendable_queue.hpp b/include/seqan3/contrib/parallel/suspendable_queue.hpp index a029d73d49..e8a6416d09 100644 --- a/include/seqan3/contrib/parallel/suspendable_queue.hpp +++ b/include/seqan3/contrib/parallel/suspendable_queue.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan suspendable queue. diff --git a/include/seqan3/contrib/std/.clang-format b/include/seqan3/contrib/std/.clang-format index c6ab535291..1e71a74dad 100644 --- a/include/seqan3/contrib/std/.clang-format +++ b/include/seqan3/contrib/std/.clang-format @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + # Format all files # find . -iname "*.hpp" | xargs clang-format-15 --style=file -i --- diff --git a/include/seqan3/contrib/std/.gitignore b/include/seqan3/contrib/std/.gitignore index 259148fa18..12e28439e5 100644 --- a/include/seqan3/contrib/std/.gitignore +++ b/include/seqan3/contrib/std/.gitignore @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + # Prerequisites *.d diff --git a/include/seqan3/contrib/std/README.md b/include/seqan3/contrib/std/README.md index 48e2703bc4..f017c86bc7 100644 --- a/include/seqan3/contrib/std/README.md +++ b/include/seqan3/contrib/std/README.md @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC-BY-4.0 + # seqan-std Implementation of several C++23 views diff --git a/include/seqan3/contrib/std/all_view.hpp b/include/seqan3/contrib/std/all_view.hpp index 8fc230d9ba..00592caa7b 100644 --- a/include/seqan3/contrib/std/all_view.hpp +++ b/include/seqan3/contrib/std/all_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/std/chunk_view.hpp b/include/seqan3/contrib/std/chunk_view.hpp index 13ab581b74..fd7667ec55 100644 --- a/include/seqan3/contrib/std/chunk_view.hpp +++ b/include/seqan3/contrib/std/chunk_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/std/concepts.hpp b/include/seqan3/contrib/std/concepts.hpp index 9be1a376a3..59d56f0e09 100644 --- a/include/seqan3/contrib/std/concepts.hpp +++ b/include/seqan3/contrib/std/concepts.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/std/detail/adaptor_base.hpp b/include/seqan3/contrib/std/detail/adaptor_base.hpp index 2ab85f9ba4..644201500a 100644 --- a/include/seqan3/contrib/std/detail/adaptor_base.hpp +++ b/include/seqan3/contrib/std/detail/adaptor_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan::stl::detail::adaptor_base and seqan::stl::detail::combined_adaptor diff --git a/include/seqan3/contrib/std/detail/adaptor_for_view_without_args.hpp b/include/seqan3/contrib/std/detail/adaptor_for_view_without_args.hpp index ae3208ca53..3e182a5b3d 100644 --- a/include/seqan3/contrib/std/detail/adaptor_for_view_without_args.hpp +++ b/include/seqan3/contrib/std/detail/adaptor_for_view_without_args.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan::stl::detail::adaptor_for_view_without_args diff --git a/include/seqan3/contrib/std/detail/adaptor_from_functor.hpp b/include/seqan3/contrib/std/detail/adaptor_from_functor.hpp index ff489e7f8d..a7c5aa6ffd 100644 --- a/include/seqan3/contrib/std/detail/adaptor_from_functor.hpp +++ b/include/seqan3/contrib/std/detail/adaptor_from_functor.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan::stl::detail::adaptor_from_functor diff --git a/include/seqan3/contrib/std/detail/compiler_definitions.hpp b/include/seqan3/contrib/std/detail/compiler_definitions.hpp index 417205b845..29a09d66e1 100644 --- a/include/seqan3/contrib/std/detail/compiler_definitions.hpp +++ b/include/seqan3/contrib/std/detail/compiler_definitions.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/std/detail/exposition_only.hpp b/include/seqan3/contrib/std/detail/exposition_only.hpp index b14e18bed3..c79a6020aa 100644 --- a/include/seqan3/contrib/std/detail/exposition_only.hpp +++ b/include/seqan3/contrib/std/detail/exposition_only.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/std/detail/non_propagating_cache.hpp b/include/seqan3/contrib/std/detail/non_propagating_cache.hpp index 3059a4ec93..8f1cfd797f 100644 --- a/include/seqan3/contrib/std/detail/non_propagating_cache.hpp +++ b/include/seqan3/contrib/std/detail/non_propagating_cache.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/std/join_with_view.hpp b/include/seqan3/contrib/std/join_with_view.hpp index d83b5b1561..c2a00e0f4a 100644 --- a/include/seqan3/contrib/std/join_with_view.hpp +++ b/include/seqan3/contrib/std/join_with_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/std/pair.hpp b/include/seqan3/contrib/std/pair.hpp index f3e8f65fd3..c9aedf63c5 100644 --- a/include/seqan3/contrib/std/pair.hpp +++ b/include/seqan3/contrib/std/pair.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan::stl::pair. diff --git a/include/seqan3/contrib/std/to.hpp b/include/seqan3/contrib/std/to.hpp index fc66f92040..e137db9772 100644 --- a/include/seqan3/contrib/std/to.hpp +++ b/include/seqan3/contrib/std/to.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/std/tuple.hpp b/include/seqan3/contrib/std/tuple.hpp index c922de226d..7d952df895 100644 --- a/include/seqan3/contrib/std/tuple.hpp +++ b/include/seqan3/contrib/std/tuple.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan::stl::tuple. diff --git a/include/seqan3/contrib/std/zip_view.hpp b/include/seqan3/contrib/std/zip_view.hpp index 653014eb8b..21f93df002 100644 --- a/include/seqan3/contrib/std/zip_view.hpp +++ b/include/seqan3/contrib/std/zip_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan-std/blob/main/LICENSE -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/contrib/stream/bgzf.hpp b/include/seqan3/contrib/stream/bgzf.hpp index 39f031890f..456b41a729 100644 --- a/include/seqan3/contrib/stream/bgzf.hpp +++ b/include/seqan3/contrib/stream/bgzf.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::contrib::bgzf_thread_count. diff --git a/include/seqan3/contrib/stream/bgzf_istream.hpp b/include/seqan3/contrib/stream/bgzf_istream.hpp index dff5f2d380..b82cd5445c 100644 --- a/include/seqan3/contrib/stream/bgzf_istream.hpp +++ b/include/seqan3/contrib/stream/bgzf_istream.hpp @@ -1,3 +1,5 @@ +// SPDX-FileCopyrightText: 2003 Jonathan de Halleux +// SPDX-License-Identifier: Zlib // zipstream Library License: // -------------------------- // diff --git a/include/seqan3/contrib/stream/bgzf_ostream.hpp b/include/seqan3/contrib/stream/bgzf_ostream.hpp index 938871294a..aa0309a95e 100644 --- a/include/seqan3/contrib/stream/bgzf_ostream.hpp +++ b/include/seqan3/contrib/stream/bgzf_ostream.hpp @@ -1,3 +1,5 @@ +// SPDX-FileCopyrightText: 2003 Jonathan de Halleux +// SPDX-License-Identifier: Zlib // zipstream Library License: // -------------------------- // diff --git a/include/seqan3/contrib/stream/bgzf_stream_util.hpp b/include/seqan3/contrib/stream/bgzf_stream_util.hpp index ff6b37b2d5..3f3ffdc764 100644 --- a/include/seqan3/contrib/stream/bgzf_stream_util.hpp +++ b/include/seqan3/contrib/stream/bgzf_stream_util.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides stream compression utilities. diff --git a/include/seqan3/contrib/stream/bz2_istream.hpp b/include/seqan3/contrib/stream/bz2_istream.hpp index 1b873f9747..4195a23336 100644 --- a/include/seqan3/contrib/stream/bz2_istream.hpp +++ b/include/seqan3/contrib/stream/bz2_istream.hpp @@ -1,3 +1,5 @@ +// SPDX-FileCopyrightText: 2003 Jonathan de Halleux +// SPDX-License-Identifier: Zlib // bzip2stream Library License: // -------------------------- // diff --git a/include/seqan3/contrib/stream/bz2_ostream.hpp b/include/seqan3/contrib/stream/bz2_ostream.hpp index 3a62b67f85..2c3eb4623f 100644 --- a/include/seqan3/contrib/stream/bz2_ostream.hpp +++ b/include/seqan3/contrib/stream/bz2_ostream.hpp @@ -1,3 +1,5 @@ +// SPDX-FileCopyrightText: 2003 Jonathan de Halleux +// SPDX-License-Identifier: Zlib // bzip2stream Library License: // -------------------------- // diff --git a/include/seqan3/contrib/stream/gz_istream.hpp b/include/seqan3/contrib/stream/gz_istream.hpp index d020e81b3f..32323dfcbd 100644 --- a/include/seqan3/contrib/stream/gz_istream.hpp +++ b/include/seqan3/contrib/stream/gz_istream.hpp @@ -1,3 +1,6 @@ +// SPDX-FileCopyrightText: 2003 Jonathan de Halleux +// SPDX-License-Identifier: Zlib + // zipstream Library License: // -------------------------- // diff --git a/include/seqan3/contrib/stream/gz_ostream.hpp b/include/seqan3/contrib/stream/gz_ostream.hpp index 611b754538..c03c4c5d64 100644 --- a/include/seqan3/contrib/stream/gz_ostream.hpp +++ b/include/seqan3/contrib/stream/gz_ostream.hpp @@ -1,3 +1,5 @@ +// SPDX-FileCopyrightText: 2003 Jonathan de Halleux +// SPDX-License-Identifier: Zlib // zipstream Library License: // -------------------------- // diff --git a/include/seqan3/core/add_enum_bitwise_operators.hpp b/include/seqan3/core/add_enum_bitwise_operators.hpp index 2dff0ffda1..1e0ecd8771 100644 --- a/include/seqan3/core/add_enum_bitwise_operators.hpp +++ b/include/seqan3/core/add_enum_bitwise_operators.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::add_enum_bitwise_operators. diff --git a/include/seqan3/core/algorithm/algorithm_result_generator_range.hpp b/include/seqan3/core/algorithm/algorithm_result_generator_range.hpp index c5c841d619..9558ae3820 100644 --- a/include/seqan3/core/algorithm/algorithm_result_generator_range.hpp +++ b/include/seqan3/core/algorithm/algorithm_result_generator_range.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::algorithm_result_generator_range. diff --git a/include/seqan3/core/algorithm/all.hpp b/include/seqan3/core/algorithm/all.hpp index e7100e4918..3242035c28 100644 --- a/include/seqan3/core/algorithm/all.hpp +++ b/include/seqan3/core/algorithm/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link core_algorithm Core / Algorithm submodule \endlink. diff --git a/include/seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp b/include/seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp index d285796b2f..e399f67fcc 100644 --- a/include/seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp +++ b/include/seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::algorithm_executor_blocking. diff --git a/include/seqan3/core/algorithm/detail/all.hpp b/include/seqan3/core/algorithm/detail/all.hpp index 92268bb4ca..ddbc36547c 100644 --- a/include/seqan3/core/algorithm/detail/all.hpp +++ b/include/seqan3/core/algorithm/detail/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the detail functionality of the \link core_algorithm Core / Algorithm submodule \endlink. diff --git a/include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp b/include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp index 1aec9aeb60..8493fb8efb 100644 --- a/include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp +++ b/include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::execution_handler_parallel. diff --git a/include/seqan3/core/algorithm/detail/execution_handler_sequential.hpp b/include/seqan3/core/algorithm/detail/execution_handler_sequential.hpp index b124f313c2..d394508654 100644 --- a/include/seqan3/core/algorithm/detail/execution_handler_sequential.hpp +++ b/include/seqan3/core/algorithm/detail/execution_handler_sequential.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::execution_handler_sequential. diff --git a/include/seqan3/core/all.hpp b/include/seqan3/core/all.hpp index 88192f47a5..d75ccce333 100644 --- a/include/seqan3/core/all.hpp +++ b/include/seqan3/core/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link core Core module \endlink. diff --git a/include/seqan3/core/concept/all.hpp b/include/seqan3/core/concept/all.hpp index 823f7b7ba3..649af5b0f9 100644 --- a/include/seqan3/core/concept/all.hpp +++ b/include/seqan3/core/concept/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link core_concept Core / Concept submodule \endlink. diff --git a/include/seqan3/core/concept/cereal.hpp b/include/seqan3/core/concept/cereal.hpp index f696acc36b..8e86db3c2a 100644 --- a/include/seqan3/core/concept/cereal.hpp +++ b/include/seqan3/core/concept/cereal.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Adaptions of concepts from the Cereal library. diff --git a/include/seqan3/core/configuration/all.hpp b/include/seqan3/core/configuration/all.hpp index 53181e50db..1824d4ca41 100644 --- a/include/seqan3/core/configuration/all.hpp +++ b/include/seqan3/core/configuration/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link core_configuration Core / Configuration submodule \endlink. diff --git a/include/seqan3/core/configuration/configuration.hpp b/include/seqan3/core/configuration/configuration.hpp index 86d617d5fc..88d8fe849a 100644 --- a/include/seqan3/core/configuration/configuration.hpp +++ b/include/seqan3/core/configuration/configuration.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::configuration and utility functions. diff --git a/include/seqan3/core/configuration/detail/all.hpp b/include/seqan3/core/configuration/detail/all.hpp index de07f28147..4f8111e9d7 100644 --- a/include/seqan3/core/configuration/detail/all.hpp +++ b/include/seqan3/core/configuration/detail/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the detail functionality of the \link core_configuration Core / Configuration submodule \endlink. diff --git a/include/seqan3/core/configuration/detail/concept.hpp b/include/seqan3/core/configuration/detail/concept.hpp index f29fcd5821..06aab80727 100644 --- a/include/seqan3/core/configuration/detail/concept.hpp +++ b/include/seqan3/core/configuration/detail/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides concepts for the configuration classes. diff --git a/include/seqan3/core/configuration/detail/configuration_element_debug_mode.hpp b/include/seqan3/core/configuration/detail/configuration_element_debug_mode.hpp index 974a34e2e7..1f2759e7d9 100644 --- a/include/seqan3/core/configuration/detail/configuration_element_debug_mode.hpp +++ b/include/seqan3/core/configuration/detail/configuration_element_debug_mode.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::debug_mode. diff --git a/include/seqan3/core/configuration/detail/configuration_element_parallel_mode.hpp b/include/seqan3/core/configuration/detail/configuration_element_parallel_mode.hpp index 3acdc00f46..ba777a68d4 100644 --- a/include/seqan3/core/configuration/detail/configuration_element_parallel_mode.hpp +++ b/include/seqan3/core/configuration/detail/configuration_element_parallel_mode.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::parallel_mode. diff --git a/include/seqan3/core/configuration/detail/configuration_utility.hpp b/include/seqan3/core/configuration/detail/configuration_utility.hpp index e279a104c2..238e207a1c 100644 --- a/include/seqan3/core/configuration/detail/configuration_utility.hpp +++ b/include/seqan3/core/configuration/detail/configuration_utility.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various auxiliary functions with which parts of the configurations can be checked. diff --git a/include/seqan3/core/configuration/pipeable_config_element.hpp b/include/seqan3/core/configuration/pipeable_config_element.hpp index 071920fc6a..3b23495a79 100644 --- a/include/seqan3/core/configuration/pipeable_config_element.hpp +++ b/include/seqan3/core/configuration/pipeable_config_element.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::pipeable_config_element. diff --git a/include/seqan3/core/debug_stream.hpp b/include/seqan3/core/debug_stream.hpp index c86dfbd3a1..9dff9179e6 100644 --- a/include/seqan3/core/debug_stream.hpp +++ b/include/seqan3/core/debug_stream.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/core/debug_stream/all.hpp b/include/seqan3/core/debug_stream/all.hpp index b518462fb3..d7b91d0c10 100644 --- a/include/seqan3/core/debug_stream/all.hpp +++ b/include/seqan3/core/debug_stream/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link core_debug_stream Core / Debug Stream submodule \endlink. diff --git a/include/seqan3/core/debug_stream/byte.hpp b/include/seqan3/core/debug_stream/byte.hpp index cbcec8479e..2c39246f1e 100644 --- a/include/seqan3/core/debug_stream/byte.hpp +++ b/include/seqan3/core/debug_stream/byte.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/core/debug_stream/debug_stream_type.hpp b/include/seqan3/core/debug_stream/debug_stream_type.hpp index 2671f49df8..56c74def92 100644 --- a/include/seqan3/core/debug_stream/debug_stream_type.hpp +++ b/include/seqan3/core/debug_stream/debug_stream_type.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/core/debug_stream/detail/to_string.hpp b/include/seqan3/core/debug_stream/detail/to_string.hpp index c3ed8c8dad..a70c039b08 100644 --- a/include/seqan3/core/debug_stream/detail/to_string.hpp +++ b/include/seqan3/core/debug_stream/detail/to_string.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/core/debug_stream/optional.hpp b/include/seqan3/core/debug_stream/optional.hpp index 637e791fde..42344ac640 100644 --- a/include/seqan3/core/debug_stream/optional.hpp +++ b/include/seqan3/core/debug_stream/optional.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/core/debug_stream/range.hpp b/include/seqan3/core/debug_stream/range.hpp index d56cd132f7..18e01db1a9 100644 --- a/include/seqan3/core/debug_stream/range.hpp +++ b/include/seqan3/core/debug_stream/range.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/core/debug_stream/tuple.hpp b/include/seqan3/core/debug_stream/tuple.hpp index e4430e6a57..896678ed52 100644 --- a/include/seqan3/core/debug_stream/tuple.hpp +++ b/include/seqan3/core/debug_stream/tuple.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/core/debug_stream/variant.hpp b/include/seqan3/core/debug_stream/variant.hpp index 1d7ba97760..38a08636ea 100644 --- a/include/seqan3/core/debug_stream/variant.hpp +++ b/include/seqan3/core/debug_stream/variant.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/core/detail/all.hpp b/include/seqan3/core/detail/all.hpp index e27084b176..8856d1f133 100644 --- a/include/seqan3/core/detail/all.hpp +++ b/include/seqan3/core/detail/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for implementation details in the core module. diff --git a/include/seqan3/core/detail/all_view.hpp b/include/seqan3/core/detail/all_view.hpp index 4f75ffdda1..7abbec9c0e 100644 --- a/include/seqan3/core/detail/all_view.hpp +++ b/include/seqan3/core/detail/all_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/core/detail/copyable_wrapper.hpp b/include/seqan3/core/detail/copyable_wrapper.hpp index 84f46b6695..c8d9007f5d 100644 --- a/include/seqan3/core/detail/copyable_wrapper.hpp +++ b/include/seqan3/core/detail/copyable_wrapper.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::copyable_wrapper. diff --git a/include/seqan3/core/detail/customisation_point.hpp b/include/seqan3/core/detail/customisation_point.hpp index 7f188dc1ba..f85fbc9359 100644 --- a/include/seqan3/core/detail/customisation_point.hpp +++ b/include/seqan3/core/detail/customisation_point.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/core/detail/deferred_crtp_base.hpp b/include/seqan3/core/detail/deferred_crtp_base.hpp index 4bd69a69ce..717286ea37 100644 --- a/include/seqan3/core/detail/deferred_crtp_base.hpp +++ b/include/seqan3/core/detail/deferred_crtp_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::deferred_crtp_base. diff --git a/include/seqan3/core/detail/empty_type.hpp b/include/seqan3/core/detail/empty_type.hpp index 5bee610b00..1b8113ce47 100644 --- a/include/seqan3/core/detail/empty_type.hpp +++ b/include/seqan3/core/detail/empty_type.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::empty_type. diff --git a/include/seqan3/core/detail/is_class_template_declarable.hpp b/include/seqan3/core/detail/is_class_template_declarable.hpp index bf4ade9619..e6bb2bdb65 100644 --- a/include/seqan3/core/detail/is_class_template_declarable.hpp +++ b/include/seqan3/core/detail/is_class_template_declarable.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides a type trait for verifying valid template declarations. diff --git a/include/seqan3/core/detail/iterator_traits.hpp b/include/seqan3/core/detail/iterator_traits.hpp index a4fd8c71a2..6ee127e930 100644 --- a/include/seqan3/core/detail/iterator_traits.hpp +++ b/include/seqan3/core/detail/iterator_traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various transformation traits for use on iterators. diff --git a/include/seqan3/core/detail/strong_type.hpp b/include/seqan3/core/detail/strong_type.hpp index 8cbbdfc7b6..74a7fbe5a2 100644 --- a/include/seqan3/core/detail/strong_type.hpp +++ b/include/seqan3/core/detail/strong_type.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides basic data structure for strong types. diff --git a/include/seqan3/core/detail/template_inspection.hpp b/include/seqan3/core/detail/template_inspection.hpp index 09fc9ee427..0120302ab8 100644 --- a/include/seqan3/core/detail/template_inspection.hpp +++ b/include/seqan3/core/detail/template_inspection.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/core/detail/test_accessor.hpp b/include/seqan3/core/detail/test_accessor.hpp index e3337f0489..3f9e93ee0f 100644 --- a/include/seqan3/core/detail/test_accessor.hpp +++ b/include/seqan3/core/detail/test_accessor.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Forward declares seqan3::detail::test_accessor. diff --git a/include/seqan3/core/detail/transfer_type_modifier_onto.hpp b/include/seqan3/core/detail/transfer_type_modifier_onto.hpp index 3aac38e2e6..d1a846274f 100644 --- a/include/seqan3/core/detail/transfer_type_modifier_onto.hpp +++ b/include/seqan3/core/detail/transfer_type_modifier_onto.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/core/platform.hpp b/include/seqan3/core/platform.hpp index 506d0b3265..f92ab6a680 100644 --- a/include/seqan3/core/platform.hpp +++ b/include/seqan3/core/platform.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides platform and dependency checks. diff --git a/include/seqan3/core/range/all.hpp b/include/seqan3/core/range/all.hpp index 33700fb8e0..79f2891eb8 100644 --- a/include/seqan3/core/range/all.hpp +++ b/include/seqan3/core/range/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link core_range Core / Range submodule \endlink. diff --git a/include/seqan3/core/range/detail/adaptor_base.hpp b/include/seqan3/core/range/detail/adaptor_base.hpp index d0981589fe..d814ba68d4 100644 --- a/include/seqan3/core/range/detail/adaptor_base.hpp +++ b/include/seqan3/core/range/detail/adaptor_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::adaptor_base and seqan3::detail::combined_adaptor diff --git a/include/seqan3/core/range/detail/adaptor_for_view_without_args.hpp b/include/seqan3/core/range/detail/adaptor_for_view_without_args.hpp index 5975195bbb..27d0f41e85 100644 --- a/include/seqan3/core/range/detail/adaptor_for_view_without_args.hpp +++ b/include/seqan3/core/range/detail/adaptor_for_view_without_args.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::adaptor_for_view_without_args diff --git a/include/seqan3/core/range/detail/adaptor_from_functor.hpp b/include/seqan3/core/range/detail/adaptor_from_functor.hpp index ca30c34428..7e28656969 100644 --- a/include/seqan3/core/range/detail/adaptor_from_functor.hpp +++ b/include/seqan3/core/range/detail/adaptor_from_functor.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::adaptor_from_functor diff --git a/include/seqan3/core/range/detail/inherited_iterator_base.hpp b/include/seqan3/core/range/detail/inherited_iterator_base.hpp index 68331fc938..e5078fc943 100644 --- a/include/seqan3/core/range/detail/inherited_iterator_base.hpp +++ b/include/seqan3/core/range/detail/inherited_iterator_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::detail::inherited_iterator_base template. diff --git a/include/seqan3/core/range/detail/misc.hpp b/include/seqan3/core/range/detail/misc.hpp index dd56a32a1b..f68bb2b890 100644 --- a/include/seqan3/core/range/detail/misc.hpp +++ b/include/seqan3/core/range/detail/misc.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various utility functions. diff --git a/include/seqan3/core/range/detail/random_access_iterator.hpp b/include/seqan3/core/range/detail/random_access_iterator.hpp index 22a23ecfc3..569e967737 100644 --- a/include/seqan3/core/range/detail/random_access_iterator.hpp +++ b/include/seqan3/core/range/detail/random_access_iterator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::detail::random_access_iterator class. diff --git a/include/seqan3/core/range/type_traits.hpp b/include/seqan3/core/range/type_traits.hpp index 5c2833afbb..ea6611c600 100644 --- a/include/seqan3/core/range/type_traits.hpp +++ b/include/seqan3/core/range/type_traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various transformation traits used by the range module. diff --git a/include/seqan3/io/all.hpp b/include/seqan3/io/all.hpp index af4cc0e98a..55dedeaeca 100644 --- a/include/seqan3/io/all.hpp +++ b/include/seqan3/io/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link io IO module \endlink. diff --git a/include/seqan3/io/detail/ignore_output_iterator.hpp b/include/seqan3/io/detail/ignore_output_iterator.hpp index 3c8e1421fb..cbc2f9e62f 100644 --- a/include/seqan3/io/detail/ignore_output_iterator.hpp +++ b/include/seqan3/io/detail/ignore_output_iterator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Rene Rahn diff --git a/include/seqan3/io/detail/in_file_iterator.hpp b/include/seqan3/io/detail/in_file_iterator.hpp index d1a31b3ce5..94df4fcb0a 100644 --- a/include/seqan3/io/detail/in_file_iterator.hpp +++ b/include/seqan3/io/detail/in_file_iterator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::detail::in_file_iterator class template. diff --git a/include/seqan3/io/detail/magic_header.hpp b/include/seqan3/io/detail/magic_header.hpp index 9a629af0f9..b32b64f84e 100644 --- a/include/seqan3/io/detail/magic_header.hpp +++ b/include/seqan3/io/detail/magic_header.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::magic_header. diff --git a/include/seqan3/io/detail/misc.hpp b/include/seqan3/io/detail/misc.hpp index 5c8d497b4d..d4b545cb85 100644 --- a/include/seqan3/io/detail/misc.hpp +++ b/include/seqan3/io/detail/misc.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various utility functions. diff --git a/include/seqan3/io/detail/misc_input.hpp b/include/seqan3/io/detail/misc_input.hpp index cf53ecce27..fff30d5cb9 100644 --- a/include/seqan3/io/detail/misc_input.hpp +++ b/include/seqan3/io/detail/misc_input.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various utility functions required only for input. diff --git a/include/seqan3/io/detail/misc_output.hpp b/include/seqan3/io/detail/misc_output.hpp index 60baf047ad..606a3d4e0e 100644 --- a/include/seqan3/io/detail/misc_output.hpp +++ b/include/seqan3/io/detail/misc_output.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various utility functions required only for output. diff --git a/include/seqan3/io/detail/out_file_iterator.hpp b/include/seqan3/io/detail/out_file_iterator.hpp index baa8423ec6..3423b79586 100644 --- a/include/seqan3/io/detail/out_file_iterator.hpp +++ b/include/seqan3/io/detail/out_file_iterator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::detail::out_file_iterator class template. diff --git a/include/seqan3/io/detail/record.hpp b/include/seqan3/io/detail/record.hpp index a18bce837d..cb99769802 100644 --- a/include/seqan3/io/detail/record.hpp +++ b/include/seqan3/io/detail/record.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\cond DEV * \file diff --git a/include/seqan3/io/detail/record_like.hpp b/include/seqan3/io/detail/record_like.hpp index a301b8cbc7..65aa4e5943 100644 --- a/include/seqan3/io/detail/record_like.hpp +++ b/include/seqan3/io/detail/record_like.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::record_like. diff --git a/include/seqan3/io/detail/safe_filesystem_entry.hpp b/include/seqan3/io/detail/safe_filesystem_entry.hpp index 434c6e0d8a..b3abb205c4 100644 --- a/include/seqan3/io/detail/safe_filesystem_entry.hpp +++ b/include/seqan3/io/detail/safe_filesystem_entry.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::safe_filesystem_entry. diff --git a/include/seqan3/io/exception.hpp b/include/seqan3/io/exception.hpp index 4bf241ca25..89c0a747b3 100644 --- a/include/seqan3/io/exception.hpp +++ b/include/seqan3/io/exception.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides exceptions used in the I/O module. diff --git a/include/seqan3/io/record.hpp b/include/seqan3/io/record.hpp index 284d9bcd89..3ca560b744 100644 --- a/include/seqan3/io/record.hpp +++ b/include/seqan3/io/record.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::record template and the seqan3::field enum. diff --git a/include/seqan3/io/sam_file/all.hpp b/include/seqan3/io/sam_file/all.hpp index 3016460449..67fca7d488 100644 --- a/include/seqan3/io/sam_file/all.hpp +++ b/include/seqan3/io/sam_file/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link io_sam_file IO / SAM File submodule \endlink. diff --git a/include/seqan3/io/sam_file/detail/cigar.hpp b/include/seqan3/io/sam_file/detail/cigar.hpp index 8da7b9dd68..a2c6700f5e 100644 --- a/include/seqan3/io/sam_file/detail/cigar.hpp +++ b/include/seqan3/io/sam_file/detail/cigar.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Auxiliary functions for the SAM IO. diff --git a/include/seqan3/io/sam_file/detail/format_sam_base.hpp b/include/seqan3/io/sam_file/detail/format_sam_base.hpp index d570d793fe..3a35874635 100644 --- a/include/seqan3/io/sam_file/detail/format_sam_base.hpp +++ b/include/seqan3/io/sam_file/detail/format_sam_base.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::format_sam_base that can be inherited from. diff --git a/include/seqan3/io/sam_file/format_bam.hpp b/include/seqan3/io/sam_file/format_bam.hpp index 92a6859b40..d96d4abb25 100644 --- a/include/seqan3/io/sam_file/format_bam.hpp +++ b/include/seqan3/io/sam_file/format_bam.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::format_bam. diff --git a/include/seqan3/io/sam_file/format_sam.hpp b/include/seqan3/io/sam_file/format_sam.hpp index 0b0c7608c2..4f0571b501 100644 --- a/include/seqan3/io/sam_file/format_sam.hpp +++ b/include/seqan3/io/sam_file/format_sam.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::format_sam. diff --git a/include/seqan3/io/sam_file/header.hpp b/include/seqan3/io/sam_file/header.hpp index 2efe5ebf15..0802ad53a7 100644 --- a/include/seqan3/io/sam_file/header.hpp +++ b/include/seqan3/io/sam_file/header.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::sam_file_header class. diff --git a/include/seqan3/io/sam_file/input.hpp b/include/seqan3/io/sam_file/input.hpp index d134b81097..f1701b139b 100644 --- a/include/seqan3/io/sam_file/input.hpp +++ b/include/seqan3/io/sam_file/input.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sam_file_input and corresponding traits classes. diff --git a/include/seqan3/io/sam_file/input_format_concept.hpp b/include/seqan3/io/sam_file/input_format_concept.hpp index abc3159368..fb043dca1b 100644 --- a/include/seqan3/io/sam_file/input_format_concept.hpp +++ b/include/seqan3/io/sam_file/input_format_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sam_file_input_format and auxiliary classes. diff --git a/include/seqan3/io/sam_file/input_options.hpp b/include/seqan3/io/sam_file/input_options.hpp index 23bb38c274..a8e546e45d 100644 --- a/include/seqan3/io/sam_file/input_options.hpp +++ b/include/seqan3/io/sam_file/input_options.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sam_file_input_options. diff --git a/include/seqan3/io/sam_file/output.hpp b/include/seqan3/io/sam_file/output.hpp index 8b57375821..c0c02d1084 100644 --- a/include/seqan3/io/sam_file/output.hpp +++ b/include/seqan3/io/sam_file/output.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sam_file_output and corresponding traits classes. diff --git a/include/seqan3/io/sam_file/output_format_concept.hpp b/include/seqan3/io/sam_file/output_format_concept.hpp index c57a1ba4e3..325a36da55 100644 --- a/include/seqan3/io/sam_file/output_format_concept.hpp +++ b/include/seqan3/io/sam_file/output_format_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sam_file_output_format and auxiliary classes. diff --git a/include/seqan3/io/sam_file/output_options.hpp b/include/seqan3/io/sam_file/output_options.hpp index d4331ebdac..d225dd8527 100644 --- a/include/seqan3/io/sam_file/output_options.hpp +++ b/include/seqan3/io/sam_file/output_options.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sam_file_output_options. diff --git a/include/seqan3/io/sam_file/record.hpp b/include/seqan3/io/sam_file/record.hpp index 090bc0a791..de27ccf191 100644 --- a/include/seqan3/io/sam_file/record.hpp +++ b/include/seqan3/io/sam_file/record.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sam_record. diff --git a/include/seqan3/io/sam_file/sam_flag.hpp b/include/seqan3/io/sam_file/sam_flag.hpp index e2c938dda7..a6a19d571a 100644 --- a/include/seqan3/io/sam_file/sam_flag.hpp +++ b/include/seqan3/io/sam_file/sam_flag.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides helper data structures for the seqan3::sam_file_output. diff --git a/include/seqan3/io/sam_file/sam_tag_dictionary.hpp b/include/seqan3/io/sam_file/sam_tag_dictionary.hpp index e5de1586c0..2f83693cec 100644 --- a/include/seqan3/io/sam_file/sam_tag_dictionary.hpp +++ b/include/seqan3/io/sam_file/sam_tag_dictionary.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::sam_tag_dictionary class and auxiliaries. diff --git a/include/seqan3/io/sequence_file/all.hpp b/include/seqan3/io/sequence_file/all.hpp index af456d91db..54e161ec94 100644 --- a/include/seqan3/io/sequence_file/all.hpp +++ b/include/seqan3/io/sequence_file/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link io_sequence_file IO / Sequence File submodule \endlink. diff --git a/include/seqan3/io/sequence_file/format_embl.hpp b/include/seqan3/io/sequence_file/format_embl.hpp index 0a58347c35..a42effb8f5 100644 --- a/include/seqan3/io/sequence_file/format_embl.hpp +++ b/include/seqan3/io/sequence_file/format_embl.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * brief Provides the seqan3::format_embl. diff --git a/include/seqan3/io/sequence_file/format_fasta.hpp b/include/seqan3/io/sequence_file/format_fasta.hpp old mode 100755 new mode 100644 index 36edf78810..e03eb98571 --- a/include/seqan3/io/sequence_file/format_fasta.hpp +++ b/include/seqan3/io/sequence_file/format_fasta.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * brief Provides the seqan3::format_fasta. diff --git a/include/seqan3/io/sequence_file/format_fastq.hpp b/include/seqan3/io/sequence_file/format_fastq.hpp index 51e0eb0457..25099a61db 100644 --- a/include/seqan3/io/sequence_file/format_fastq.hpp +++ b/include/seqan3/io/sequence_file/format_fastq.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * brief Provides the seqan3::format_fastq. diff --git a/include/seqan3/io/sequence_file/format_genbank.hpp b/include/seqan3/io/sequence_file/format_genbank.hpp index e8e4fd6970..e12ef695cc 100644 --- a/include/seqan3/io/sequence_file/format_genbank.hpp +++ b/include/seqan3/io/sequence_file/format_genbank.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::sequence_file_format_genbank class. diff --git a/include/seqan3/io/sequence_file/input.hpp b/include/seqan3/io/sequence_file/input.hpp index ef59a45713..2cbefb31c4 100644 --- a/include/seqan3/io/sequence_file/input.hpp +++ b/include/seqan3/io/sequence_file/input.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sequence_file_input and corresponding traits classes. diff --git a/include/seqan3/io/sequence_file/input_format_concept.hpp b/include/seqan3/io/sequence_file/input_format_concept.hpp index 099d194c65..3cbb5791a4 100644 --- a/include/seqan3/io/sequence_file/input_format_concept.hpp +++ b/include/seqan3/io/sequence_file/input_format_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sequence_file_input_format and auxiliary classes. diff --git a/include/seqan3/io/sequence_file/input_options.hpp b/include/seqan3/io/sequence_file/input_options.hpp index 7608a30cf1..b565de3f92 100644 --- a/include/seqan3/io/sequence_file/input_options.hpp +++ b/include/seqan3/io/sequence_file/input_options.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sequence_file_input_options. diff --git a/include/seqan3/io/sequence_file/output.hpp b/include/seqan3/io/sequence_file/output.hpp index 745c35e4da..648b366100 100644 --- a/include/seqan3/io/sequence_file/output.hpp +++ b/include/seqan3/io/sequence_file/output.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sequence_file_output and corresponding traits classes. diff --git a/include/seqan3/io/sequence_file/output_format_concept.hpp b/include/seqan3/io/sequence_file/output_format_concept.hpp index 4d25656075..63357e69ff 100644 --- a/include/seqan3/io/sequence_file/output_format_concept.hpp +++ b/include/seqan3/io/sequence_file/output_format_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sequence_file_output_format and auxiliary classes. diff --git a/include/seqan3/io/sequence_file/output_options.hpp b/include/seqan3/io/sequence_file/output_options.hpp index ea7f321c5e..71363184c1 100644 --- a/include/seqan3/io/sequence_file/output_options.hpp +++ b/include/seqan3/io/sequence_file/output_options.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sequence_file_output_options. diff --git a/include/seqan3/io/sequence_file/record.hpp b/include/seqan3/io/sequence_file/record.hpp index 94bdabed92..7611975740 100644 --- a/include/seqan3/io/sequence_file/record.hpp +++ b/include/seqan3/io/sequence_file/record.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::sequence_record. diff --git a/include/seqan3/io/stream/all.hpp b/include/seqan3/io/stream/all.hpp index c9aa43f0c2..7754a5c7ff 100644 --- a/include/seqan3/io/stream/all.hpp +++ b/include/seqan3/io/stream/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for all stream related functionality. diff --git a/include/seqan3/io/stream/concept.hpp b/include/seqan3/io/stream/concept.hpp index dbc53c4fe0..218116cada 100644 --- a/include/seqan3/io/stream/concept.hpp +++ b/include/seqan3/io/stream/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Stream concepts. diff --git a/include/seqan3/io/stream/detail/fast_istreambuf_iterator.hpp b/include/seqan3/io/stream/detail/fast_istreambuf_iterator.hpp index be3b7bf87e..50cdb80a61 100644 --- a/include/seqan3/io/stream/detail/fast_istreambuf_iterator.hpp +++ b/include/seqan3/io/stream/detail/fast_istreambuf_iterator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::fast_istreambuf_iterator. diff --git a/include/seqan3/io/stream/detail/fast_ostreambuf_iterator.hpp b/include/seqan3/io/stream/detail/fast_ostreambuf_iterator.hpp index 0aff8b0747..344a4bdc41 100644 --- a/include/seqan3/io/stream/detail/fast_ostreambuf_iterator.hpp +++ b/include/seqan3/io/stream/detail/fast_ostreambuf_iterator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::fast_ostreambuf_iterator. diff --git a/include/seqan3/io/stream/detail/stream_buffer_exposer.hpp b/include/seqan3/io/stream/detail/stream_buffer_exposer.hpp index 655abb5ebd..7ef96b8803 100644 --- a/include/seqan3/io/stream/detail/stream_buffer_exposer.hpp +++ b/include/seqan3/io/stream/detail/stream_buffer_exposer.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::stream_buffer_exposer. diff --git a/include/seqan3/io/structure_file/all.hpp b/include/seqan3/io/structure_file/all.hpp index dafed07f0b..70547f17ed 100644 --- a/include/seqan3/io/structure_file/all.hpp +++ b/include/seqan3/io/structure_file/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-include for the structure IO submodule. diff --git a/include/seqan3/io/structure_file/detail.hpp b/include/seqan3/io/structure_file/detail.hpp index 390145a16e..cca57c70f4 100644 --- a/include/seqan3/io/structure_file/detail.hpp +++ b/include/seqan3/io/structure_file/detail.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Helper functions (e.g. conversions) for the structure IO submodule. diff --git a/include/seqan3/io/structure_file/format_vienna.hpp b/include/seqan3/io/structure_file/format_vienna.hpp index 6b6bfe0e72..52c99dd41b 100644 --- a/include/seqan3/io/structure_file/format_vienna.hpp +++ b/include/seqan3/io/structure_file/format_vienna.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::format_vienna. diff --git a/include/seqan3/io/structure_file/input.hpp b/include/seqan3/io/structure_file/input.hpp index df9b7d5557..415239f8f2 100644 --- a/include/seqan3/io/structure_file/input.hpp +++ b/include/seqan3/io/structure_file/input.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::structure_file_input and corresponding traits classes. diff --git a/include/seqan3/io/structure_file/input_format_concept.hpp b/include/seqan3/io/structure_file/input_format_concept.hpp index 7ad1bfe190..ddcee1fcc0 100644 --- a/include/seqan3/io/structure_file/input_format_concept.hpp +++ b/include/seqan3/io/structure_file/input_format_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::structure_file_input_format. diff --git a/include/seqan3/io/structure_file/input_options.hpp b/include/seqan3/io/structure_file/input_options.hpp index 4254e3613b..82027036cf 100644 --- a/include/seqan3/io/structure_file/input_options.hpp +++ b/include/seqan3/io/structure_file/input_options.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::structure_file_input_options. diff --git a/include/seqan3/io/structure_file/output.hpp b/include/seqan3/io/structure_file/output.hpp index 9af9afb772..870e2243e7 100644 --- a/include/seqan3/io/structure_file/output.hpp +++ b/include/seqan3/io/structure_file/output.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::structure_file_output and corresponding traits classes. diff --git a/include/seqan3/io/structure_file/output_format_concept.hpp b/include/seqan3/io/structure_file/output_format_concept.hpp index 995629b4e8..c4c27b9705 100644 --- a/include/seqan3/io/structure_file/output_format_concept.hpp +++ b/include/seqan3/io/structure_file/output_format_concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::structure_file_output_format and auxiliary classes. diff --git a/include/seqan3/io/structure_file/output_options.hpp b/include/seqan3/io/structure_file/output_options.hpp index e6f23bbb95..540f21c826 100644 --- a/include/seqan3/io/structure_file/output_options.hpp +++ b/include/seqan3/io/structure_file/output_options.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::structure_file_output_options. diff --git a/include/seqan3/io/structure_file/record.hpp b/include/seqan3/io/structure_file/record.hpp index 5eacafdb44..6e108f3fc9 100644 --- a/include/seqan3/io/structure_file/record.hpp +++ b/include/seqan3/io/structure_file/record.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::structure_record. diff --git a/include/seqan3/io/views/all.hpp b/include/seqan3/io/views/all.hpp index 4960ec7d3c..88ae10ede4 100644 --- a/include/seqan3/io/views/all.hpp +++ b/include/seqan3/io/views/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link io_views IO / Views submodule \endlink. diff --git a/include/seqan3/io/views/async_input_buffer.hpp b/include/seqan3/io/views/async_input_buffer.hpp index 132eaac2ad..191cea7b1c 100644 --- a/include/seqan3/io/views/async_input_buffer.hpp +++ b/include/seqan3/io/views/async_input_buffer.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/io/views/detail/istreambuf_view.hpp b/include/seqan3/io/views/detail/istreambuf_view.hpp index 7e5044a52a..2d729f5f03 100644 --- a/include/seqan3/io/views/detail/istreambuf_view.hpp +++ b/include/seqan3/io/views/detail/istreambuf_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/io/views/detail/take_exactly_view.hpp b/include/seqan3/io/views/detail/take_exactly_view.hpp index 77f4c6ed07..fd730b088a 100644 --- a/include/seqan3/io/views/detail/take_exactly_view.hpp +++ b/include/seqan3/io/views/detail/take_exactly_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/io/views/detail/take_line_view.hpp b/include/seqan3/io/views/detail/take_line_view.hpp index 37b0327356..8c8c17c4a6 100644 --- a/include/seqan3/io/views/detail/take_line_view.hpp +++ b/include/seqan3/io/views/detail/take_line_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/io/views/detail/take_until_view.hpp b/include/seqan3/io/views/detail/take_until_view.hpp index f4a28a9cd9..209e33b856 100644 --- a/include/seqan3/io/views/detail/take_until_view.hpp +++ b/include/seqan3/io/views/detail/take_until_view.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/search/all.hpp b/include/seqan3/search/all.hpp index 116324063b..57c402bb05 100644 --- a/include/seqan3/search/all.hpp +++ b/include/seqan3/search/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/configuration/all.hpp b/include/seqan3/search/configuration/all.hpp index be33185904..23b45e1872 100644 --- a/include/seqan3/search/configuration/all.hpp +++ b/include/seqan3/search/configuration/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link search_configuration search configuration module \endlink. diff --git a/include/seqan3/search/configuration/default_configuration.hpp b/include/seqan3/search/configuration/default_configuration.hpp index 4586ea78b2..157546a964 100644 --- a/include/seqan3/search/configuration/default_configuration.hpp +++ b/include/seqan3/search/configuration/default_configuration.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the default configuration for the seqan3::search() interface. diff --git a/include/seqan3/search/configuration/detail.hpp b/include/seqan3/search/configuration/detail.hpp index a630ffde54..203f39ff0c 100644 --- a/include/seqan3/search/configuration/detail.hpp +++ b/include/seqan3/search/configuration/detail.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides compatibility matrix for search configurations. diff --git a/include/seqan3/search/configuration/hit.hpp b/include/seqan3/search/configuration/hit.hpp index 2b1e27c9e4..e121ffbbed 100644 --- a/include/seqan3/search/configuration/hit.hpp +++ b/include/seqan3/search/configuration/hit.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the configuration to define the hit strategies "hit_strata", "hit_all", diff --git a/include/seqan3/search/configuration/max_error.hpp b/include/seqan3/search/configuration/max_error.hpp index d176938f5b..fc9d5e7b48 100644 --- a/include/seqan3/search/configuration/max_error.hpp +++ b/include/seqan3/search/configuration/max_error.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the configuration for maximum number of errors for all error types. diff --git a/include/seqan3/search/configuration/max_error_common.hpp b/include/seqan3/search/configuration/max_error_common.hpp index 9f4e5dc4ee..d2d244d74b 100644 --- a/include/seqan3/search/configuration/max_error_common.hpp +++ b/include/seqan3/search/configuration/max_error_common.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the error types for maximum number of errors. diff --git a/include/seqan3/search/configuration/on_result.hpp b/include/seqan3/search/configuration/on_result.hpp index f176e89aa6..258301b325 100644 --- a/include/seqan3/search/configuration/on_result.hpp +++ b/include/seqan3/search/configuration/on_result.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::search_cfg::on_result. diff --git a/include/seqan3/search/configuration/output.hpp b/include/seqan3/search/configuration/output.hpp index 92e3c12fa9..d7096775af 100644 --- a/include/seqan3/search/configuration/output.hpp +++ b/include/seqan3/search/configuration/output.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the configuration for the content of the search result. diff --git a/include/seqan3/search/configuration/parallel.hpp b/include/seqan3/search/configuration/parallel.hpp index c3464f5588..9b2580fab8 100644 --- a/include/seqan3/search/configuration/parallel.hpp +++ b/include/seqan3/search/configuration/parallel.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::search_cfg::parallel configuration. diff --git a/include/seqan3/search/configuration/result_type.hpp b/include/seqan3/search/configuration/result_type.hpp index 5a540fbcf7..c63feb73bb 100644 --- a/include/seqan3/search/configuration/result_type.hpp +++ b/include/seqan3/search/configuration/result_type.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::search_cfg::detail::result_type. diff --git a/include/seqan3/search/detail/policy_max_error.hpp b/include/seqan3/search/detail/policy_max_error.hpp index f16b0e22da..344bc7c437 100644 --- a/include/seqan3/search/detail/policy_max_error.hpp +++ b/include/seqan3/search/detail/policy_max_error.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the seqan3::detail::policy_max_error. diff --git a/include/seqan3/search/detail/policy_search_result_builder.hpp b/include/seqan3/search/detail/policy_search_result_builder.hpp index 43310c7970..fda41801d5 100644 --- a/include/seqan3/search/detail/policy_search_result_builder.hpp +++ b/include/seqan3/search/detail/policy_search_result_builder.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/search/detail/search_common.hpp b/include/seqan3/search/detail/search_common.hpp index f8208d2c0f..c57a7bcfce 100644 --- a/include/seqan3/search/detail/search_common.hpp +++ b/include/seqan3/search/detail/search_common.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/detail/search_configurator.hpp b/include/seqan3/search/detail/search_configurator.hpp index 7e5031658c..87a32b281a 100644 --- a/include/seqan3/search/detail/search_configurator.hpp +++ b/include/seqan3/search/detail/search_configurator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::search_configurator. diff --git a/include/seqan3/search/detail/search_scheme_algorithm.hpp b/include/seqan3/search/detail/search_scheme_algorithm.hpp index 70fd763697..d5704052c4 100644 --- a/include/seqan3/search/detail/search_scheme_algorithm.hpp +++ b/include/seqan3/search/detail/search_scheme_algorithm.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/detail/search_scheme_precomputed.hpp b/include/seqan3/search/detail/search_scheme_precomputed.hpp index 5c584d1004..eddabbacff 100644 --- a/include/seqan3/search/detail/search_scheme_precomputed.hpp +++ b/include/seqan3/search/detail/search_scheme_precomputed.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/detail/search_traits.hpp b/include/seqan3/search/detail/search_traits.hpp index 886dce8501..b853a05c9e 100644 --- a/include/seqan3/search/detail/search_traits.hpp +++ b/include/seqan3/search/detail/search_traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::search_traits. diff --git a/include/seqan3/search/detail/unidirectional_search_algorithm.hpp b/include/seqan3/search/detail/unidirectional_search_algorithm.hpp index ecd0a3f318..9857786881 100644 --- a/include/seqan3/search/detail/unidirectional_search_algorithm.hpp +++ b/include/seqan3/search/detail/unidirectional_search_algorithm.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/dream_index/all.hpp b/include/seqan3/search/dream_index/all.hpp index 0ffc341d0c..08376c3287 100644 --- a/include/seqan3/search/dream_index/all.hpp +++ b/include/seqan3/search/dream_index/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp b/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp index cabaaa1010..4792e1de47 100644 --- a/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp +++ b/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/search/fm_index/all.hpp b/include/seqan3/search/fm_index/all.hpp index 9e067b2b41..acb9434c1c 100644 --- a/include/seqan3/search/fm_index/all.hpp +++ b/include/seqan3/search/fm_index/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/fm_index/bi_fm_index.hpp b/include/seqan3/search/fm_index/bi_fm_index.hpp index 6656918f17..e329a1d2c2 100644 --- a/include/seqan3/search/fm_index/bi_fm_index.hpp +++ b/include/seqan3/search/fm_index/bi_fm_index.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp b/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp index e55462e009..3d8ff96a36 100644 --- a/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp +++ b/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/fm_index/concept.hpp b/include/seqan3/search/fm_index/concept.hpp index 6c8d00896e..664b81c8a3 100644 --- a/include/seqan3/search/fm_index/concept.hpp +++ b/include/seqan3/search/fm_index/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/fm_index/detail/fm_index_cursor.hpp b/include/seqan3/search/fm_index/detail/fm_index_cursor.hpp index bd4f365e09..3248b8427d 100644 --- a/include/seqan3/search/fm_index/detail/fm_index_cursor.hpp +++ b/include/seqan3/search/fm_index/detail/fm_index_cursor.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/fm_index/fm_index.hpp b/include/seqan3/search/fm_index/fm_index.hpp index bfdc3174f3..36c61633c0 100644 --- a/include/seqan3/search/fm_index/fm_index.hpp +++ b/include/seqan3/search/fm_index/fm_index.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/fm_index/fm_index_cursor.hpp b/include/seqan3/search/fm_index/fm_index_cursor.hpp index dbffe26206..d6454e272e 100644 --- a/include/seqan3/search/fm_index/fm_index_cursor.hpp +++ b/include/seqan3/search/fm_index/fm_index_cursor.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Christopher Pockrandt diff --git a/include/seqan3/search/kmer_index/all.hpp b/include/seqan3/search/kmer_index/all.hpp index 32434636b4..210482a39c 100644 --- a/include/seqan3/search/kmer_index/all.hpp +++ b/include/seqan3/search/kmer_index/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/search/kmer_index/shape.hpp b/include/seqan3/search/kmer_index/shape.hpp index 6de6ba8686..9602f6feba 100644 --- a/include/seqan3/search/kmer_index/shape.hpp +++ b/include/seqan3/search/kmer_index/shape.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/search/search.hpp b/include/seqan3/search/search.hpp index 4ee9245a0e..2a33d84026 100644 --- a/include/seqan3/search/search.hpp +++ b/include/seqan3/search/search.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the public interface for search algorithms. diff --git a/include/seqan3/search/search_result.hpp b/include/seqan3/search/search_result.hpp index a55c546f73..9a2e2ceccc 100644 --- a/include/seqan3/search/search_result.hpp +++ b/include/seqan3/search/search_result.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::search_result. diff --git a/include/seqan3/search/views/all.hpp b/include/seqan3/search/views/all.hpp index 244ea1559c..17b48a7cac 100644 --- a/include/seqan3/search/views/all.hpp +++ b/include/seqan3/search/views/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link search_views Search / Views submodule \endlink. diff --git a/include/seqan3/search/views/kmer_hash.hpp b/include/seqan3/search/views/kmer_hash.hpp index b39927b6cd..8315109323 100644 --- a/include/seqan3/search/views/kmer_hash.hpp +++ b/include/seqan3/search/views/kmer_hash.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/search/views/minimiser.hpp b/include/seqan3/search/views/minimiser.hpp index ec6cc487fb..5d35b7b32a 100644 --- a/include/seqan3/search/views/minimiser.hpp +++ b/include/seqan3/search/views/minimiser.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Mitra Darvish diff --git a/include/seqan3/search/views/minimiser_hash.hpp b/include/seqan3/search/views/minimiser_hash.hpp index 6391311584..e6da8fc964 100644 --- a/include/seqan3/search/views/minimiser_hash.hpp +++ b/include/seqan3/search/views/minimiser_hash.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Mitra Darvish diff --git a/include/seqan3/std/charconv b/include/seqan3/std/charconv index 4e25c079ec..4f0a304aa2 100644 --- a/include/seqan3/std/charconv +++ b/include/seqan3/std/charconv @@ -1,10 +1,6 @@ -// -*- C++ -*- -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief The [\ header](https://en.cppreference.com/w/cpp/header/charconv) from C++17's standard library. diff --git a/include/seqan3/std/new b/include/seqan3/std/new index a02a986328..ab3bdca941 100644 --- a/include/seqan3/std/new +++ b/include/seqan3/std/new @@ -1,10 +1,6 @@ -// -*- C++ -*- -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief The [\ header](https://en.cppreference.com/w/cpp/header/new) from C++17's standard library. diff --git a/include/seqan3/utility/all.hpp b/include/seqan3/utility/all.hpp index 237e99f84c..aa9d9f55fc 100644 --- a/include/seqan3/utility/all.hpp +++ b/include/seqan3/utility/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link utility utility module \endlink, which provides useful, stand-alone features diff --git a/include/seqan3/utility/bloom_filter/all.hpp b/include/seqan3/utility/bloom_filter/all.hpp index 5d57a11a8c..b52977450e 100644 --- a/include/seqan3/utility/bloom_filter/all.hpp +++ b/include/seqan3/utility/bloom_filter/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Tobias Loka diff --git a/include/seqan3/utility/bloom_filter/bloom_filter.hpp b/include/seqan3/utility/bloom_filter/bloom_filter.hpp index c1bf20108a..501eb01e29 100644 --- a/include/seqan3/utility/bloom_filter/bloom_filter.hpp +++ b/include/seqan3/utility/bloom_filter/bloom_filter.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Tobias Loka diff --git a/include/seqan3/utility/char_operations/all.hpp b/include/seqan3/utility/char_operations/all.hpp index caed0c22c9..95df7757eb 100644 --- a/include/seqan3/utility/char_operations/all.hpp +++ b/include/seqan3/utility/char_operations/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link utility_char_operations Utility / Builtin Character Operations submodule \endlink. diff --git a/include/seqan3/utility/char_operations/predicate.hpp b/include/seqan3/utility/char_operations/predicate.hpp index fe6c8816e0..4be9eecdaf 100644 --- a/include/seqan3/utility/char_operations/predicate.hpp +++ b/include/seqan3/utility/char_operations/predicate.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides character predicates for tokenisation. diff --git a/include/seqan3/utility/char_operations/predicate_detail.hpp b/include/seqan3/utility/char_operations/predicate_detail.hpp index 8cefdc735b..840a4e5775 100644 --- a/include/seqan3/utility/char_operations/predicate_detail.hpp +++ b/include/seqan3/utility/char_operations/predicate_detail.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides parse conditions for tokenization. diff --git a/include/seqan3/utility/char_operations/pretty_print.hpp b/include/seqan3/utility/char_operations/pretty_print.hpp index f3d61f4e1b..92fcd9d556 100644 --- a/include/seqan3/utility/char_operations/pretty_print.hpp +++ b/include/seqan3/utility/char_operations/pretty_print.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/utility/char_operations/transform.hpp b/include/seqan3/utility/char_operations/transform.hpp index afd53f9bb4..4d09716c67 100644 --- a/include/seqan3/utility/char_operations/transform.hpp +++ b/include/seqan3/utility/char_operations/transform.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides utilities for modifying characters. diff --git a/include/seqan3/utility/concept.hpp b/include/seqan3/utility/concept.hpp index 4fad9aa568..0c5c69e0ef 100644 --- a/include/seqan3/utility/concept.hpp +++ b/include/seqan3/utility/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides concepts that do not have equivalents in C++20. diff --git a/include/seqan3/utility/container/aligned_allocator.hpp b/include/seqan3/utility/container/aligned_allocator.hpp index 8049d831ea..a2de27eb88 100644 --- a/include/seqan3/utility/container/aligned_allocator.hpp +++ b/include/seqan3/utility/container/aligned_allocator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/utility/container/all.hpp b/include/seqan3/utility/container/all.hpp index 9e08de3130..3d102eb7ae 100644 --- a/include/seqan3/utility/container/all.hpp +++ b/include/seqan3/utility/container/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link utility_container Utility / Container submodule \endlink. diff --git a/include/seqan3/utility/container/concept.hpp b/include/seqan3/utility/container/concept.hpp index 9bfd18096d..7719788e65 100644 --- a/include/seqan3/utility/container/concept.hpp +++ b/include/seqan3/utility/container/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Adaptations of concepts from the standard library. diff --git a/include/seqan3/utility/container/dynamic_bitset.hpp b/include/seqan3/utility/container/dynamic_bitset.hpp index c8a2b097be..1fefc968f7 100644 --- a/include/seqan3/utility/container/dynamic_bitset.hpp +++ b/include/seqan3/utility/container/dynamic_bitset.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/utility/container/small_string.hpp b/include/seqan3/utility/container/small_string.hpp index 9ebedfe2e0..c60a291ba9 100644 --- a/include/seqan3/utility/container/small_string.hpp +++ b/include/seqan3/utility/container/small_string.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/utility/container/small_vector.hpp b/include/seqan3/utility/container/small_vector.hpp index 8883923cc7..fb51452cd4 100644 --- a/include/seqan3/utility/container/small_vector.hpp +++ b/include/seqan3/utility/container/small_vector.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/utility/detail/bits_of.hpp b/include/seqan3/utility/detail/bits_of.hpp index ef5831fe53..4765167eb4 100644 --- a/include/seqan3/utility/detail/bits_of.hpp +++ b/include/seqan3/utility/detail/bits_of.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides utility functions for bit twiddling. diff --git a/include/seqan3/utility/detail/integer_traits.hpp b/include/seqan3/utility/detail/integer_traits.hpp index 4b7943d956..376cdec8f6 100644 --- a/include/seqan3/utility/detail/integer_traits.hpp +++ b/include/seqan3/utility/detail/integer_traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/include/seqan3/utility/detail/multi_invocable.hpp b/include/seqan3/utility/detail/multi_invocable.hpp index 23dd3ae536..6b616f32f6 100644 --- a/include/seqan3/utility/detail/multi_invocable.hpp +++ b/include/seqan3/utility/detail/multi_invocable.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides a type that combines multiple invocables. diff --git a/include/seqan3/utility/detail/to_little_endian.hpp b/include/seqan3/utility/detail/to_little_endian.hpp index 63a32ba8dc..14bbb66b4e 100644 --- a/include/seqan3/utility/detail/to_little_endian.hpp +++ b/include/seqan3/utility/detail/to_little_endian.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides utility functions for bit twiddling. diff --git a/include/seqan3/utility/detail/type_name_as_string.hpp b/include/seqan3/utility/detail/type_name_as_string.hpp index d82fc0394f..5151dd46b7 100644 --- a/include/seqan3/utility/detail/type_name_as_string.hpp +++ b/include/seqan3/utility/detail/type_name_as_string.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides traits to inspect some information of a type, for example its name. diff --git a/include/seqan3/utility/math.hpp b/include/seqan3/utility/math.hpp index d29fa5c8ee..c014ebdca5 100644 --- a/include/seqan3/utility/math.hpp +++ b/include/seqan3/utility/math.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides math related functionality. diff --git a/include/seqan3/utility/parallel/all.hpp b/include/seqan3/utility/parallel/all.hpp index c84d1ee872..3e2e0b9629 100644 --- a/include/seqan3/utility/parallel/all.hpp +++ b/include/seqan3/utility/parallel/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \cond DEV \link utility_parallel Utility / Parallel submodule \endlink \endcond. diff --git a/include/seqan3/utility/parallel/detail/all.hpp b/include/seqan3/utility/parallel/detail/all.hpp index bbc3d0a4e3..c3a435485b 100644 --- a/include/seqan3/utility/parallel/detail/all.hpp +++ b/include/seqan3/utility/parallel/detail/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides implementation relevant helper objects and functions. diff --git a/include/seqan3/utility/parallel/detail/latch.hpp b/include/seqan3/utility/parallel/detail/latch.hpp index 5198ef88ae..9832b24276 100644 --- a/include/seqan3/utility/parallel/detail/latch.hpp +++ b/include/seqan3/utility/parallel/detail/latch.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::latch. diff --git a/include/seqan3/utility/parallel/detail/reader_writer_manager.hpp b/include/seqan3/utility/parallel/detail/reader_writer_manager.hpp index 0ef2d47d25..cd3aa43f76 100644 --- a/include/seqan3/utility/parallel/detail/reader_writer_manager.hpp +++ b/include/seqan3/utility/parallel/detail/reader_writer_manager.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::reader_writer_manager. diff --git a/include/seqan3/utility/parallel/detail/spin_delay.hpp b/include/seqan3/utility/parallel/detail/spin_delay.hpp index ec25e1be44..2cee4bc3e8 100644 --- a/include/seqan3/utility/parallel/detail/spin_delay.hpp +++ b/include/seqan3/utility/parallel/detail/spin_delay.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::spin_delay. diff --git a/include/seqan3/utility/range/all.hpp b/include/seqan3/utility/range/all.hpp index 15206c1a17..dc005bee47 100644 --- a/include/seqan3/utility/range/all.hpp +++ b/include/seqan3/utility/range/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link utility_range Utility / Range submodule \endlink. diff --git a/include/seqan3/utility/range/concept.hpp b/include/seqan3/utility/range/concept.hpp index d0d641a3f5..610cf82951 100644 --- a/include/seqan3/utility/range/concept.hpp +++ b/include/seqan3/utility/range/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Additional non-standard concepts for ranges. diff --git a/include/seqan3/utility/range/to.hpp b/include/seqan3/utility/range/to.hpp index 01e208ea70..8fe3a14b79 100644 --- a/include/seqan3/utility/range/to.hpp +++ b/include/seqan3/utility/range/to.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Simon Gene Gottlieb diff --git a/include/seqan3/utility/simd/algorithm.hpp b/include/seqan3/utility/simd/algorithm.hpp index 7f00b759bf..9d407920fc 100644 --- a/include/seqan3/utility/simd/algorithm.hpp +++ b/include/seqan3/utility/simd/algorithm.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides algorithms to modify seqan3::simd::simd_type. diff --git a/include/seqan3/utility/simd/all.hpp b/include/seqan3/utility/simd/all.hpp index c7984ecd86..989d7f699f 100644 --- a/include/seqan3/utility/simd/all.hpp +++ b/include/seqan3/utility/simd/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/utility/simd/concept.hpp b/include/seqan3/utility/simd/concept.hpp index 196d8befd0..191410dda4 100644 --- a/include/seqan3/utility/simd/concept.hpp +++ b/include/seqan3/utility/simd/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::simd::simd_concept. diff --git a/include/seqan3/utility/simd/detail/builtin_simd.hpp b/include/seqan3/utility/simd/detail/builtin_simd.hpp index dc92928b81..16996b4809 100644 --- a/include/seqan3/utility/simd/detail/builtin_simd.hpp +++ b/include/seqan3/utility/simd/detail/builtin_simd.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/utility/simd/detail/builtin_simd_intrinsics.hpp b/include/seqan3/utility/simd/detail/builtin_simd_intrinsics.hpp index bf1e6b4917..8d057d3c60 100644 --- a/include/seqan3/utility/simd/detail/builtin_simd_intrinsics.hpp +++ b/include/seqan3/utility/simd/detail/builtin_simd_intrinsics.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides intrinsics include for builtin simd. diff --git a/include/seqan3/utility/simd/detail/debug_stream_simd.hpp b/include/seqan3/utility/simd/detail/debug_stream_simd.hpp index 30fbd9d5bb..84504df474 100644 --- a/include/seqan3/utility/simd/detail/debug_stream_simd.hpp +++ b/include/seqan3/utility/simd/detail/debug_stream_simd.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::debug_stream overload for seqan3::simd::simd_type. diff --git a/include/seqan3/utility/simd/detail/default_simd_backend.hpp b/include/seqan3/utility/simd/detail/default_simd_backend.hpp index b5c5f29468..9628eaee53 100644 --- a/include/seqan3/utility/simd/detail/default_simd_backend.hpp +++ b/include/seqan3/utility/simd/detail/default_simd_backend.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::default_simd_backend diff --git a/include/seqan3/utility/simd/detail/default_simd_length.hpp b/include/seqan3/utility/simd/detail/default_simd_length.hpp index 7b5795aea3..4a4dbbab46 100644 --- a/include/seqan3/utility/simd/detail/default_simd_length.hpp +++ b/include/seqan3/utility/simd/detail/default_simd_length.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::default_simd_length and seqan3::detail::default_simd_max_length diff --git a/include/seqan3/utility/simd/detail/simd_algorithm_avx2.hpp b/include/seqan3/utility/simd/detail/simd_algorithm_avx2.hpp index 22e5db3e4c..0bfc4fabca 100644 --- a/include/seqan3/utility/simd/detail/simd_algorithm_avx2.hpp +++ b/include/seqan3/utility/simd/detail/simd_algorithm_avx2.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides specific algorithm implementations for AVX2 instruction set. diff --git a/include/seqan3/utility/simd/detail/simd_algorithm_avx512.hpp b/include/seqan3/utility/simd/detail/simd_algorithm_avx512.hpp index d29e1ad156..75745223c2 100644 --- a/include/seqan3/utility/simd/detail/simd_algorithm_avx512.hpp +++ b/include/seqan3/utility/simd/detail/simd_algorithm_avx512.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides specific algorithm implementations for AVX512 instruction set. diff --git a/include/seqan3/utility/simd/detail/simd_algorithm_sse4.hpp b/include/seqan3/utility/simd/detail/simd_algorithm_sse4.hpp index 915be6e41d..89501dbd46 100644 --- a/include/seqan3/utility/simd/detail/simd_algorithm_sse4.hpp +++ b/include/seqan3/utility/simd/detail/simd_algorithm_sse4.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides specific algorithm implementations for SSE4 instruction set. diff --git a/include/seqan3/utility/simd/simd.hpp b/include/seqan3/utility/simd/simd.hpp index 6aef3866f7..13cdb578ad 100644 --- a/include/seqan3/utility/simd/simd.hpp +++ b/include/seqan3/utility/simd/simd.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::simd::simd_type diff --git a/include/seqan3/utility/simd/simd_traits.hpp b/include/seqan3/utility/simd/simd_traits.hpp index 4ca30df972..afd5fd46fc 100644 --- a/include/seqan3/utility/simd/simd_traits.hpp +++ b/include/seqan3/utility/simd/simd_traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::simd::simd_traits diff --git a/include/seqan3/utility/simd/views/all.hpp b/include/seqan3/utility/simd/views/all.hpp index 6864e7323d..bb8ed4beef 100644 --- a/include/seqan3/utility/simd/views/all.hpp +++ b/include/seqan3/utility/simd/views/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link utility_simd_views Utility / SIMD / Views submodule \endlink. diff --git a/include/seqan3/utility/simd/views/iota_simd.hpp b/include/seqan3/utility/simd/views/iota_simd.hpp index 2e7bcfcb7a..be4531644b 100644 --- a/include/seqan3/utility/simd/views/iota_simd.hpp +++ b/include/seqan3/utility/simd/views/iota_simd.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::counted_simd_iterator and seqan3::views::iota_simd. diff --git a/include/seqan3/utility/simd/views/to_simd.hpp b/include/seqan3/utility/simd/views/to_simd.hpp index 5746a5ce49..d5339555d3 100644 --- a/include/seqan3/utility/simd/views/to_simd.hpp +++ b/include/seqan3/utility/simd/views/to_simd.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::detail::to_simd view. diff --git a/include/seqan3/utility/tuple/all.hpp b/include/seqan3/utility/tuple/all.hpp index 000ef143a9..5d7d54fad0 100644 --- a/include/seqan3/utility/tuple/all.hpp +++ b/include/seqan3/utility/tuple/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link utility_tuple Utility / Tuple submodule \endlink. diff --git a/include/seqan3/utility/tuple/common_pair.hpp b/include/seqan3/utility/tuple/common_pair.hpp index 20b58bc537..0b28ecbab4 100644 --- a/include/seqan3/utility/tuple/common_pair.hpp +++ b/include/seqan3/utility/tuple/common_pair.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::common_pair. diff --git a/include/seqan3/utility/tuple/common_tuple.hpp b/include/seqan3/utility/tuple/common_tuple.hpp index 8c3d65109f..e24f327afb 100644 --- a/include/seqan3/utility/tuple/common_tuple.hpp +++ b/include/seqan3/utility/tuple/common_tuple.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::common_tuple. diff --git a/include/seqan3/utility/tuple/concept.hpp b/include/seqan3/utility/tuple/concept.hpp index 5dfc9d023f..5eb7d20889 100644 --- a/include/seqan3/utility/tuple/concept.hpp +++ b/include/seqan3/utility/tuple/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::tuple_like. diff --git a/include/seqan3/utility/tuple/pod_tuple.hpp b/include/seqan3/utility/tuple/pod_tuple.hpp index ad9704a6d0..c158677831 100644 --- a/include/seqan3/utility/tuple/pod_tuple.hpp +++ b/include/seqan3/utility/tuple/pod_tuple.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/utility/tuple/pop_front.hpp b/include/seqan3/utility/tuple/pop_front.hpp index e3afa97b49..5aa3fb655a 100644 --- a/include/seqan3/utility/tuple/pop_front.hpp +++ b/include/seqan3/utility/tuple/pop_front.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::tuple_pop_front. diff --git a/include/seqan3/utility/tuple/split.hpp b/include/seqan3/utility/tuple/split.hpp index 9ad99a163c..51ddade2e6 100644 --- a/include/seqan3/utility/tuple/split.hpp +++ b/include/seqan3/utility/tuple/split.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::tuple_split. diff --git a/include/seqan3/utility/type_list/all.hpp b/include/seqan3/utility/type_list/all.hpp index 5e0eb2067a..8257b59b89 100644 --- a/include/seqan3/utility/type_list/all.hpp +++ b/include/seqan3/utility/type_list/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Rene Rahn diff --git a/include/seqan3/utility/type_list/detail/type_list_algorithm.hpp b/include/seqan3/utility/type_list/detail/type_list_algorithm.hpp index 1725639765..4ea2429e3e 100644 --- a/include/seqan3/utility/type_list/detail/type_list_algorithm.hpp +++ b/include/seqan3/utility/type_list/detail/type_list_algorithm.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides algorithms for meta programming, parameter packs and seqan3::type_list. diff --git a/include/seqan3/utility/type_list/traits.hpp b/include/seqan3/utility/type_list/traits.hpp index 2ceab805d2..9daf44d056 100644 --- a/include/seqan3/utility/type_list/traits.hpp +++ b/include/seqan3/utility/type_list/traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/utility/type_list/type_list.hpp b/include/seqan3/utility/type_list/type_list.hpp index fee8f549df..d359ae5304 100644 --- a/include/seqan3/utility/type_list/type_list.hpp +++ b/include/seqan3/utility/type_list/type_list.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/utility/type_pack/all.hpp b/include/seqan3/utility/type_pack/all.hpp index 2f2eeab4d3..88a332becd 100644 --- a/include/seqan3/utility/type_pack/all.hpp +++ b/include/seqan3/utility/type_pack/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Rene Rahn diff --git a/include/seqan3/utility/type_pack/detail/type_pack_algorithm.hpp b/include/seqan3/utility/type_pack/detail/type_pack_algorithm.hpp index a88bacbdb5..43eb2b057e 100644 --- a/include/seqan3/utility/type_pack/detail/type_pack_algorithm.hpp +++ b/include/seqan3/utility/type_pack/detail/type_pack_algorithm.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides algorithms for meta programming, parameter packs and seqan3::type_list. diff --git a/include/seqan3/utility/type_pack/traits.hpp b/include/seqan3/utility/type_pack/traits.hpp index d4d356e4bd..2edaeda0a4 100644 --- a/include/seqan3/utility/type_pack/traits.hpp +++ b/include/seqan3/utility/type_pack/traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Rene Rahn diff --git a/include/seqan3/utility/type_traits/all.hpp b/include/seqan3/utility/type_traits/all.hpp index 9a5c705476..3432a19d41 100644 --- a/include/seqan3/utility/type_traits/all.hpp +++ b/include/seqan3/utility/type_traits/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link utility_type_traits Utility / Type Traits submodule \endlink. diff --git a/include/seqan3/utility/type_traits/basic.hpp b/include/seqan3/utility/type_traits/basic.hpp index 446df8f4e1..f97112b19b 100644 --- a/include/seqan3/utility/type_traits/basic.hpp +++ b/include/seqan3/utility/type_traits/basic.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various type traits on generic types. diff --git a/include/seqan3/utility/type_traits/concept.hpp b/include/seqan3/utility/type_traits/concept.hpp index 2e4c9e3274..94a11bc632 100644 --- a/include/seqan3/utility/type_traits/concept.hpp +++ b/include/seqan3/utility/type_traits/concept.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides the concepts seqan3::transformation_trait and seqan3::unary_type_trait. diff --git a/include/seqan3/utility/type_traits/detail/transformation_trait_or.hpp b/include/seqan3/utility/type_traits/detail/transformation_trait_or.hpp index 7ce74dd987..1cf0f3f77e 100644 --- a/include/seqan3/utility/type_traits/detail/transformation_trait_or.hpp +++ b/include/seqan3/utility/type_traits/detail/transformation_trait_or.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Marcel Ehrhardt diff --git a/include/seqan3/utility/type_traits/function_traits.hpp b/include/seqan3/utility/type_traits/function_traits.hpp index 4da8f72c28..496f6de24a 100644 --- a/include/seqan3/utility/type_traits/function_traits.hpp +++ b/include/seqan3/utility/type_traits/function_traits.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides various type traits for use on functions. diff --git a/include/seqan3/utility/type_traits/lazy_conditional.hpp b/include/seqan3/utility/type_traits/lazy_conditional.hpp index 185056b4af..a887b73b2e 100644 --- a/include/seqan3/utility/type_traits/lazy_conditional.hpp +++ b/include/seqan3/utility/type_traits/lazy_conditional.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides lazy template instantiation traits. diff --git a/include/seqan3/utility/views/all.hpp b/include/seqan3/utility/views/all.hpp index 4d4a0102ef..60c8375528 100644 --- a/include/seqan3/utility/views/all.hpp +++ b/include/seqan3/utility/views/all.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Meta-header for the \link utility_views Utility / Views submodule \endlink. diff --git a/include/seqan3/utility/views/chunk.hpp b/include/seqan3/utility/views/chunk.hpp index fc29d5ecd5..43b6ceea25 100644 --- a/include/seqan3/utility/views/chunk.hpp +++ b/include/seqan3/utility/views/chunk.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/utility/views/convert.hpp b/include/seqan3/utility/views/convert.hpp index b40bd79626..7a9b9cf6fd 100644 --- a/include/seqan3/utility/views/convert.hpp +++ b/include/seqan3/utility/views/convert.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/utility/views/deep.hpp b/include/seqan3/utility/views/deep.hpp index 05e47e52be..dd6c4cfd46 100644 --- a/include/seqan3/utility/views/deep.hpp +++ b/include/seqan3/utility/views/deep.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::deep. diff --git a/include/seqan3/utility/views/detail/helper.hpp b/include/seqan3/utility/views/detail/helper.hpp index 317afb5eff..417e136474 100644 --- a/include/seqan3/utility/views/detail/helper.hpp +++ b/include/seqan3/utility/views/detail/helper.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides implementation helper for seqan3::views::zip and seqan3::views::join_with. diff --git a/include/seqan3/utility/views/detail/non_propagating_cache.hpp b/include/seqan3/utility/views/detail/non_propagating_cache.hpp index bd04a72261..4cb5ca0b21 100644 --- a/include/seqan3/utility/views/detail/non_propagating_cache.hpp +++ b/include/seqan3/utility/views/detail/non_propagating_cache.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/utility/views/elements.hpp b/include/seqan3/utility/views/elements.hpp index f7594a53ce..84a1b70ca3 100644 --- a/include/seqan3/utility/views/elements.hpp +++ b/include/seqan3/utility/views/elements.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::elements. diff --git a/include/seqan3/utility/views/enforce_random_access.hpp b/include/seqan3/utility/views/enforce_random_access.hpp index 968123c179..8641df2fc1 100644 --- a/include/seqan3/utility/views/enforce_random_access.hpp +++ b/include/seqan3/utility/views/enforce_random_access.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Rene Rahn diff --git a/include/seqan3/utility/views/interleave.hpp b/include/seqan3/utility/views/interleave.hpp index 1fed9be139..d4e0b9d7ef 100644 --- a/include/seqan3/utility/views/interleave.hpp +++ b/include/seqan3/utility/views/interleave.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Joshua Kim diff --git a/include/seqan3/utility/views/join_with.hpp b/include/seqan3/utility/views/join_with.hpp index d6d31c7be2..2c9a9df88c 100644 --- a/include/seqan3/utility/views/join_with.hpp +++ b/include/seqan3/utility/views/join_with.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/utility/views/pairwise_combine.hpp b/include/seqan3/utility/views/pairwise_combine.hpp index 50e76fc9ea..147e1b1871 100644 --- a/include/seqan3/utility/views/pairwise_combine.hpp +++ b/include/seqan3/utility/views/pairwise_combine.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::pairwise_combine. diff --git a/include/seqan3/utility/views/repeat.hpp b/include/seqan3/utility/views/repeat.hpp index 0acaf93daa..f36b3f6d45 100644 --- a/include/seqan3/utility/views/repeat.hpp +++ b/include/seqan3/utility/views/repeat.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/utility/views/repeat_n.hpp b/include/seqan3/utility/views/repeat_n.hpp index aca4efcccd..cbc05bea48 100644 --- a/include/seqan3/utility/views/repeat_n.hpp +++ b/include/seqan3/utility/views/repeat_n.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Svenja Mehringer diff --git a/include/seqan3/utility/views/single_pass_input.hpp b/include/seqan3/utility/views/single_pass_input.hpp index 44c86053d2..2cddc75c11 100644 --- a/include/seqan3/utility/views/single_pass_input.hpp +++ b/include/seqan3/utility/views/single_pass_input.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Rene Rahn diff --git a/include/seqan3/utility/views/slice.hpp b/include/seqan3/utility/views/slice.hpp index d9b9eb337e..72a8d3d2c3 100644 --- a/include/seqan3/utility/views/slice.hpp +++ b/include/seqan3/utility/views/slice.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::views::slice. diff --git a/include/seqan3/utility/views/type_reduce.hpp b/include/seqan3/utility/views/type_reduce.hpp index 8902d5dcf5..36277612aa 100644 --- a/include/seqan3/utility/views/type_reduce.hpp +++ b/include/seqan3/utility/views/type_reduce.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Hannes Hauswedell diff --git a/include/seqan3/utility/views/zip.hpp b/include/seqan3/utility/views/zip.hpp index c9308b6367..57239fb9a9 100644 --- a/include/seqan3/utility/views/zip.hpp +++ b/include/seqan3/utility/views/zip.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Enrico Seiler diff --git a/include/seqan3/version.hpp b/include/seqan3/version.hpp index 04f4292dbb..3b3c8c8a6e 100644 --- a/include/seqan3/version.hpp +++ b/include/seqan3/version.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/api_stability/3.0.2/0001-NOAPI-Disable-Werror.patch.license b/test/api_stability/3.0.2/0001-NOAPI-Disable-Werror.patch.license new file mode 100644 index 0000000000..706402f5fe --- /dev/null +++ b/test/api_stability/3.0.2/0001-NOAPI-Disable-Werror.patch.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: BSD-3-Clause diff --git a/test/api_stability/3.0.2/0002-NOAPI-DETAIL-MISC-Remove-top-level-scoring-scheme-de.patch.license b/test/api_stability/3.0.2/0002-NOAPI-DETAIL-MISC-Remove-top-level-scoring-scheme-de.patch.license new file mode 100644 index 0000000000..706402f5fe --- /dev/null +++ b/test/api_stability/3.0.2/0002-NOAPI-DETAIL-MISC-Remove-top-level-scoring-scheme-de.patch.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: BSD-3-Clause diff --git a/test/api_stability/3.0.2/0003-NOAPI-INCLUDE-add-missing-include-bi_fm_index.patch.license b/test/api_stability/3.0.2/0003-NOAPI-INCLUDE-add-missing-include-bi_fm_index.patch.license new file mode 100644 index 0000000000..706402f5fe --- /dev/null +++ b/test/api_stability/3.0.2/0003-NOAPI-INCLUDE-add-missing-include-bi_fm_index.patch.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik 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Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: BSD-3-Clause diff --git a/test/api_stability/3.2.0/0007-NOAPI-DETAIL-Update-copyright.patch.license b/test/api_stability/3.2.0/0007-NOAPI-DETAIL-Update-copyright.patch.license new file mode 100644 index 0000000000..706402f5fe --- /dev/null +++ b/test/api_stability/3.2.0/0007-NOAPI-DETAIL-Update-copyright.patch.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: BSD-3-Clause diff --git a/test/api_stability/3.3.0/0001-FIX-take_until_view_test.patch.license b/test/api_stability/3.3.0/0001-FIX-take_until_view_test.patch.license new file mode 100644 index 0000000000..706402f5fe --- /dev/null +++ b/test/api_stability/3.3.0/0001-FIX-take_until_view_test.patch.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: BSD-3-Clause diff --git a/test/api_stability/3.3.0/0002-FIX-Change-constexpr-test.patch.license b/test/api_stability/3.3.0/0002-FIX-Change-constexpr-test.patch.license new file mode 100644 index 0000000000..706402f5fe --- /dev/null +++ b/test/api_stability/3.3.0/0002-FIX-Change-constexpr-test.patch.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: BSD-3-Clause diff --git a/test/api_stability/CMakeLists.txt b/test/api_stability/CMakeLists.txt index c4fd985816..199fb338ed 100644 --- a/test/api_stability/CMakeLists.txt +++ b/test/api_stability/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + cmake_minimum_required (VERSION 3.8) project (api_stability) diff --git a/test/api_stability/README.md b/test/api_stability/README.md index 6bedc49907..b77a52105e 100644 --- a/test/api_stability/README.md +++ b/test/api_stability/README.md @@ -1,3 +1,8 @@ + + # SeqAn3 API Stability This test suite will check whether the current version of seqan3 (e.g. git checkout) can be used to build the test cases diff --git a/test/cmake/add_subdirectories.cmake b/test/cmake/add_subdirectories.cmake index feb8c0f1b1..652a91a09e 100644 --- a/test/cmake/add_subdirectories.cmake +++ b/test/cmake/add_subdirectories.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/diagnostics/list_missing_unit_tests.cmake b/test/cmake/diagnostics/list_missing_unit_tests.cmake index db04179b60..a6c2f29b33 100644 --- a/test/cmake/diagnostics/list_missing_unit_tests.cmake +++ b/test/cmake/diagnostics/list_missing_unit_tests.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/diagnostics/list_unused_snippets.cmake b/test/cmake/diagnostics/list_unused_snippets.cmake index bd36fd3beb..170033bbb5 100644 --- a/test/cmake/diagnostics/list_unused_snippets.cmake +++ b/test/cmake/diagnostics/list_unused_snippets.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/diagnostics/list_unused_unit_tests.cmake b/test/cmake/diagnostics/list_unused_unit_tests.cmake index 54c648da6b..5828454885 100644 --- a/test/cmake/diagnostics/list_unused_unit_tests.cmake +++ b/test/cmake/diagnostics/list_unused_unit_tests.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/include_dependencies/add_include_dependencies.cmake b/test/cmake/include_dependencies/add_include_dependencies.cmake index b86ae42c64..32fec3492f 100644 --- a/test/cmake/include_dependencies/add_include_dependencies.cmake +++ b/test/cmake/include_dependencies/add_include_dependencies.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/include_dependencies/generate_include_dependencies.cmake b/test/cmake/include_dependencies/generate_include_dependencies.cmake index 86a76c28a8..02ee06d631 100644 --- a/test/cmake/include_dependencies/generate_include_dependencies.cmake +++ b/test/cmake/include_dependencies/generate_include_dependencies.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.12) diff --git a/test/cmake/seqan3_generate_snippet.cmake b/test/cmake/seqan3_generate_snippet.cmake index 45680cb122..68426d2f42 100644 --- a/test/cmake/seqan3_generate_snippet.cmake +++ b/test/cmake/seqan3_generate_snippet.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/seqan3_macro_benchmark.cmake b/test/cmake/seqan3_macro_benchmark.cmake index 8b9ccd0d98..1b4456ee9a 100644 --- a/test/cmake/seqan3_macro_benchmark.cmake +++ b/test/cmake/seqan3_macro_benchmark.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/seqan3_path_longest_stem.cmake b/test/cmake/seqan3_path_longest_stem.cmake index b6e08029fd..bd2cd333b8 100644 --- a/test/cmake/seqan3_path_longest_stem.cmake +++ b/test/cmake/seqan3_path_longest_stem.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/seqan3_require_benchmark.cmake b/test/cmake/seqan3_require_benchmark.cmake index 82d7527f18..fbfec8c83b 100644 --- a/test/cmake/seqan3_require_benchmark.cmake +++ b/test/cmake/seqan3_require_benchmark.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.16) diff --git a/test/cmake/seqan3_require_ccache.cmake b/test/cmake/seqan3_require_ccache.cmake index 8fd3716179..d5ed971880 100644 --- a/test/cmake/seqan3_require_ccache.cmake +++ b/test/cmake/seqan3_require_ccache.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.15) diff --git a/test/cmake/seqan3_require_test.cmake b/test/cmake/seqan3_require_test.cmake index c91f65d4d5..1a97a2d1ef 100644 --- a/test/cmake/seqan3_require_test.cmake +++ b/test/cmake/seqan3_require_test.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.16) diff --git a/test/cmake/seqan3_test_component.cmake b/test/cmake/seqan3_test_component.cmake index e6c4210106..52d2b58bd5 100644 --- a/test/cmake/seqan3_test_component.cmake +++ b/test/cmake/seqan3_test_component.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/cmake/seqan3_test_files.cmake b/test/cmake/seqan3_test_files.cmake index 7f8c607693..820fa11652 100644 --- a/test/cmake/seqan3_test_files.cmake +++ b/test/cmake/seqan3_test_files.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/coverage/CMakeLists.txt b/test/coverage/CMakeLists.txt index 42e5e40ca8..eed8508cdf 100644 --- a/test/coverage/CMakeLists.txt +++ b/test/coverage/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10...3.22) project (seqan3_test_coverage CXX) diff --git a/test/documentation/.vercel/README.md b/test/documentation/.vercel/README.md index 46aba9c3b3..dae6af7e14 100644 --- a/test/documentation/.vercel/README.md +++ b/test/documentation/.vercel/README.md @@ -1,3 +1,8 @@ + + How to setup vercel.com: * In vercel.com go create a new project. diff --git a/test/documentation/.vercel/build.sh b/test/documentation/.vercel/build.sh index f0fd3729a6..ec979d56f0 100755 --- a/test/documentation/.vercel/build.sh +++ b/test/documentation/.vercel/build.sh @@ -1,4 +1,9 @@ #!/usr/bin/env bash + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + set -exo pipefail SOURCE_DIR=`pwd` diff --git a/test/documentation/.vercel/index.html b/test/documentation/.vercel/index.html index aab137bfac..ce5f127a2c 100644 --- a/test/documentation/.vercel/index.html +++ b/test/documentation/.vercel/index.html @@ -1,3 +1,8 @@ + + SeqAn Documentation Preview diff --git a/test/documentation/.vercel/install.sh b/test/documentation/.vercel/install.sh index 0b89492dc8..86e5412888 100755 --- a/test/documentation/.vercel/install.sh +++ b/test/documentation/.vercel/install.sh @@ -1,4 +1,9 @@ #!/usr/bin/env bash + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + set -exo pipefail DOXYGEN_VERSION=1.9.8 diff --git a/test/documentation/.vercel/powered-by-vercel.svg b/test/documentation/.vercel/powered-by-vercel.svg index 6ed36d3b74..f0e4fd3b49 100644 --- a/test/documentation/.vercel/powered-by-vercel.svg +++ b/test/documentation/.vercel/powered-by-vercel.svg @@ -1,3 +1,6 @@ + diff --git a/test/documentation/.vercel/vercel.css b/test/documentation/.vercel/vercel.css index 04afab81b5..5389e3e7c4 100644 --- a/test/documentation/.vercel/vercel.css +++ b/test/documentation/.vercel/vercel.css @@ -1,3 +1,8 @@ +/* SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin + SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik + SPDX-License-Identifier: BSD-3-Clause +*/ + @media (prefers-color-scheme: dark) { :root { --background-color: black; diff --git a/test/documentation/CMakeLists.txt b/test/documentation/CMakeLists.txt index 2d821e1b7a..dc582f007b 100644 --- a/test/documentation/CMakeLists.txt +++ b/test/documentation/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause # Minimum cmake version cmake_minimum_required (VERSION 3.7) diff --git a/test/documentation/DoxygenLayout.xml b/test/documentation/DoxygenLayout.xml index 15f74bb3a2..cffaaaeaa5 100644 --- a/test/documentation/DoxygenLayout.xml +++ b/test/documentation/DoxygenLayout.xml @@ -1,3 +1,7 @@ + diff --git a/test/documentation/README.md b/test/documentation/README.md index fef7fc3411..8cfe636cf3 100644 --- a/test/documentation/README.md +++ b/test/documentation/README.md @@ -1,3 +1,8 @@ + + # seqan3 documentation Currently, we can only build the documentation on *nix systems. diff --git a/test/documentation/api-stability.js b/test/documentation/api-stability.js index 6f626b2f3a..893cdef0c5 100644 --- a/test/documentation/api-stability.js +++ b/test/documentation/api-stability.js @@ -1,3 +1,7 @@ +/* SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin + SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik + SPDX-License-Identifier: BSD-3-Clause +*/ /* Enrico Seiler (enrico.seiler@fu-berlin.de), 2021 */ $(document).ready(function() diff --git a/test/documentation/doc_dev/CMakeLists.txt b/test/documentation/doc_dev/CMakeLists.txt index 23f38be5af..636132635f 100644 --- a/test/documentation/doc_dev/CMakeLists.txt +++ b/test/documentation/doc_dev/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause message (STATUS "Configuring devel doc.") diff --git a/test/documentation/doc_usr/CMakeLists.txt b/test/documentation/doc_usr/CMakeLists.txt index 0f9c4fe149..d2e5c23207 100644 --- a/test/documentation/doc_usr/CMakeLists.txt +++ b/test/documentation/doc_usr/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause message (STATUS "Configuring user doc.") diff --git a/test/documentation/doxygen-awesome/doxygen-awesome-darkmode-toggle.js b/test/documentation/doxygen-awesome/doxygen-awesome-darkmode-toggle.js index 40fe2d38e0..e2d7ec6008 100644 --- a/test/documentation/doxygen-awesome/doxygen-awesome-darkmode-toggle.js +++ b/test/documentation/doxygen-awesome/doxygen-awesome-darkmode-toggle.js @@ -1,3 +1,6 @@ +/* SPDX-FileCopyrightText: 2021 - 2023 jothepro + SPDX-License-Identifier: MIT +*/ /** Doxygen Awesome diff --git a/test/documentation/doxygen-awesome/doxygen-awesome-fragment-copy-button.js b/test/documentation/doxygen-awesome/doxygen-awesome-fragment-copy-button.js index 86c16fd93a..6da6e30df6 100644 --- a/test/documentation/doxygen-awesome/doxygen-awesome-fragment-copy-button.js +++ b/test/documentation/doxygen-awesome/doxygen-awesome-fragment-copy-button.js @@ -1,3 +1,6 @@ +/* SPDX-FileCopyrightText: 2022 - 2023 jothepro + SPDX-License-Identifier: MIT +*/ /** Doxygen Awesome diff --git a/test/documentation/doxygen-awesome/doxygen-awesome-interactive-toc.js b/test/documentation/doxygen-awesome/doxygen-awesome-interactive-toc.js index 20a9669d7d..35aaa2814c 100644 --- a/test/documentation/doxygen-awesome/doxygen-awesome-interactive-toc.js +++ b/test/documentation/doxygen-awesome/doxygen-awesome-interactive-toc.js @@ -1,3 +1,6 @@ +/* SPDX-FileCopyrightText: 2022 - 2023 jothepro + SPDX-License-Identifier: MIT +*/ /** Doxygen Awesome @@ -78,4 +81,4 @@ class DoxygenAwesomeInteractiveToc { active?.classList.add("active") active?.classList.remove("aboveActive") } -} \ No newline at end of file +} diff --git a/test/documentation/doxygen-awesome/doxygen-awesome-paragraph-link.js b/test/documentation/doxygen-awesome/doxygen-awesome-paragraph-link.js index e53d132cea..8006bcb5b5 100644 --- a/test/documentation/doxygen-awesome/doxygen-awesome-paragraph-link.js +++ b/test/documentation/doxygen-awesome/doxygen-awesome-paragraph-link.js @@ -1,3 +1,6 @@ +/* SPDX-FileCopyrightText: 2022 - 2023 jothepro + SPDX-License-Identifier: MIT +*/ /** Doxygen Awesome diff --git a/test/documentation/doxygen-awesome/doxygen-awesome-tabs.js b/test/documentation/doxygen-awesome/doxygen-awesome-tabs.js index 8e725b2300..9677897ff9 100644 --- a/test/documentation/doxygen-awesome/doxygen-awesome-tabs.js +++ b/test/documentation/doxygen-awesome/doxygen-awesome-tabs.js @@ -1,3 +1,5 @@ +// SPDX-FileCopyrightText: 2023 jothepro +// SPDX-License-Identifier: MIT /** Doxygen Awesome @@ -67,4 +69,4 @@ class DoxygenAwesomeTabs { }) }) } -} \ No newline at end of file +} diff --git a/test/documentation/doxygen-awesome/doxygen-awesome.css b/test/documentation/doxygen-awesome/doxygen-awesome.css index e8399cbce5..571b014211 100644 --- a/test/documentation/doxygen-awesome/doxygen-awesome.css +++ b/test/documentation/doxygen-awesome/doxygen-awesome.css @@ -1,3 +1,6 @@ +/* SPDX-FileCopyrightText: 2021 - 2023 jothepro + SPDX-License-Identifier: MIT +*/ /** Doxygen Awesome @@ -2519,4 +2522,4 @@ h2:hover a.anchorlink, h1:hover a.anchorlink, h3:hover a.anchorlink, h4:hover a. html.dark-mode .tabs-overview button.tab-button:hover .tab-title { color: var(--page-foreground-color); -} \ No newline at end of file +} diff --git a/test/documentation/seqan3-doxygen-layout.cmake b/test/documentation/seqan3-doxygen-layout.cmake index 6ba6d9d5d1..76abb485e7 100644 --- a/test/documentation/seqan3-doxygen-layout.cmake +++ b/test/documentation/seqan3-doxygen-layout.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/documentation/seqan3-doxygen-package.cmake b/test/documentation/seqan3-doxygen-package.cmake index 73ad0c28f0..6d0ec5d730 100644 --- a/test/documentation/seqan3-doxygen-package.cmake +++ b/test/documentation/seqan3-doxygen-package.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/documentation/seqan3-doxygen.cmake b/test/documentation/seqan3-doxygen.cmake index ab0ad54880..778b7325c4 100644 --- a/test/documentation/seqan3-doxygen.cmake +++ b/test/documentation/seqan3-doxygen.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10) diff --git a/test/documentation/seqan3.css b/test/documentation/seqan3.css index bb06abb2bd..9b79bc144c 100644 --- a/test/documentation/seqan3.css +++ b/test/documentation/seqan3.css @@ -1,3 +1,7 @@ +/* SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin + SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik + SPDX-License-Identifier: BSD-3-Clause +*/ /* https://jothepro.github.io/doxygen-awesome-css/md_docs_customization.html */ diff --git a/test/documentation/seqan3_doxygen_cfg.in b/test/documentation/seqan3_doxygen_cfg.in index dbd11fce7d..bc18d57383 100644 --- a/test/documentation/seqan3_doxygen_cfg.in +++ b/test/documentation/seqan3_doxygen_cfg.in @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + # Doxyfile 1.9.8 #--------------------------------------------------------------------------- diff --git a/test/documentation/seqan3_footer.html.in b/test/documentation/seqan3_footer.html.in index 84ddec3f9f..c5d1457661 100644 --- a/test/documentation/seqan3_footer.html.in +++ b/test/documentation/seqan3_footer.html.in @@ -1,3 +1,7 @@ + diff --git a/test/documentation/seqan3_header.html b/test/documentation/seqan3_header.html index 9e11917db4..87d8c9bf1b 100644 --- a/test/documentation/seqan3_header.html +++ b/test/documentation/seqan3_header.html @@ -1,3 +1,7 @@ + diff --git a/test/documentation/seqan_logo.svg b/test/documentation/seqan_logo.svg old mode 100755 new mode 100644 diff --git a/test/documentation/seqan_logo.svg.license b/test/documentation/seqan_logo.svg.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/test/documentation/seqan_logo.svg.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/test/documentation/version.js b/test/documentation/version.js index b4512c9332..cbfd65cab3 100644 --- a/test/documentation/version.js +++ b/test/documentation/version.js @@ -1,3 +1,7 @@ +/* SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin + SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik + SPDX-License-Identifier: BSD-3-Clause +*/ /* Jongkyu Kim (j.kim@fu-berlin.de), 2016.01.12 Adaptations by Enrico Seiler (enrico.seiler@fu-berlin.de), 2020 */ diff --git a/test/documentation/version.php b/test/documentation/version.php index 5c7bc08465..571d3dbc86 100644 --- a/test/documentation/version.php +++ b/test/documentation/version.php @@ -1,3 +1,8 @@ + int main() diff --git a/test/external_project/use-cmake3.5.cmake b/test/external_project/use-cmake3.5.cmake index 2e482e70f8..c8f9954db6 100644 --- a/test/external_project/use-cmake3.5.cmake +++ b/test/external_project/use-cmake3.5.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.14) project (seqan3_test_seqan3_config CXX) diff --git a/test/header/CMakeLists.txt b/test/header/CMakeLists.txt index 5bfab0be52..9d366197c9 100644 --- a/test/header/CMakeLists.txt +++ b/test/header/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.12...3.22) project (seqan3_header_test CXX) diff --git a/test/header/generate_header_source.cmake b/test/header/generate_header_source.cmake index 87bd248d25..a161b8e8d8 100644 --- a/test/header/generate_header_source.cmake +++ b/test/header/generate_header_source.cmake @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + cmake_minimum_required (VERSION 3.10) option (HEADER_FILE_ABSOLUTE "") diff --git a/test/include/seqan3/test/alignment/align_pairwise_edit_distance.hpp b/test/include/seqan3/test/alignment/align_pairwise_edit_distance.hpp index be27361485..3834a4fbbe 100644 --- a/test/include/seqan3/test/alignment/align_pairwise_edit_distance.hpp +++ b/test/include/seqan3/test/alignment/align_pairwise_edit_distance.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/include/seqan3/test/cereal.hpp b/test/include/seqan3/test/cereal.hpp index 599a19e23d..38461521a2 100644 --- a/test/include/seqan3/test/cereal.hpp +++ b/test/include/seqan3/test/cereal.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides cereal functionality for tests. diff --git a/test/include/seqan3/test/concept_helper_classes.hpp b/test/include/seqan3/test/concept_helper_classes.hpp index 34470f7630..adb0122c8f 100644 --- a/test/include/seqan3/test/concept_helper_classes.hpp +++ b/test/include/seqan3/test/concept_helper_classes.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides helper classes for testing concepts. diff --git a/test/include/seqan3/test/expect_range_eq.hpp b/test/include/seqan3/test/expect_range_eq.hpp index 5082b58150..bb4782fe7b 100644 --- a/test/include/seqan3/test/expect_range_eq.hpp +++ b/test/include/seqan3/test/expect_range_eq.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides test utilities for std::ranges::range types. diff --git a/test/include/seqan3/test/expect_same_type.hpp b/test/include/seqan3/test/expect_same_type.hpp index 3bf459bb25..64599dfe4d 100644 --- a/test/include/seqan3/test/expect_same_type.hpp +++ b/test/include/seqan3/test/expect_same_type.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides EXPECT_SAME_TYPE. diff --git a/test/include/seqan3/test/file_access.hpp b/test/include/seqan3/test/file_access.hpp index ba15a6e426..b7b8fe0a05 100644 --- a/test/include/seqan3/test/file_access.hpp +++ b/test/include/seqan3/test/file_access.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Detects read and write access for a path. diff --git a/test/include/seqan3/test/fixture/io/sam_file/simple_three_verbose_reads_fixture.hpp b/test/include/seqan3/test/fixture/io/sam_file/simple_three_verbose_reads_fixture.hpp index 34f55803cf..6d79a6a6e0 100644 --- a/test/include/seqan3/test/fixture/io/sam_file/simple_three_verbose_reads_fixture.hpp +++ b/test/include/seqan3/test/fixture/io/sam_file/simple_three_verbose_reads_fixture.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/include/seqan3/test/fixture/io/sequence_file/standard_fixture.hpp b/test/include/seqan3/test/fixture/io/sequence_file/standard_fixture.hpp index 8d7bda6aae..143beeb82f 100644 --- a/test/include/seqan3/test/fixture/io/sequence_file/standard_fixture.hpp +++ b/test/include/seqan3/test/fixture/io/sequence_file/standard_fixture.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/include/seqan3/test/literal/bytes.hpp b/test/include/seqan3/test/literal/bytes.hpp index 4a0a0ab86b..b5c024ae91 100644 --- a/test/include/seqan3/test/literal/bytes.hpp +++ b/test/include/seqan3/test/literal/bytes.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides literals for unit conversions. diff --git a/test/include/seqan3/test/literal/cigar_literal.hpp b/test/include/seqan3/test/literal/cigar_literal.hpp index 8e2532fc54..60cd7b1f52 100644 --- a/test/include/seqan3/test/literal/cigar_literal.hpp +++ b/test/include/seqan3/test/literal/cigar_literal.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides a test literal "1S1M1D1M1I"_cigar for std::vector. diff --git a/test/include/seqan3/test/literal/gapped_dna5_literal.hpp b/test/include/seqan3/test/literal/gapped_dna5_literal.hpp index 4771576887..ec8231251e 100644 --- a/test/include/seqan3/test/literal/gapped_dna5_literal.hpp +++ b/test/include/seqan3/test/literal/gapped_dna5_literal.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides a test literal "AC-GT"_gapped_dna5 for std::vector>. diff --git a/test/include/seqan3/test/performance/seqan2_minimiser.h b/test/include/seqan3/test/performance/seqan2_minimiser.h index 3e5a335078..50864ee5d1 100644 --- a/test/include/seqan3/test/performance/seqan2_minimiser.h +++ b/test/include/seqan3/test/performance/seqan2_minimiser.h @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \author Mitra Darvish * \brief Provides a SeqAn2 minimiser hash. diff --git a/test/include/seqan3/test/performance/sequence_generator.hpp b/test/include/seqan3/test/performance/sequence_generator.hpp index 0221188db1..9c563588b5 100644 --- a/test/include/seqan3/test/performance/sequence_generator.hpp +++ b/test/include/seqan3/test/performance/sequence_generator.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides test utilities for seqan3::simd::simd_type types. diff --git a/test/include/seqan3/test/performance/simd_dna4.hpp b/test/include/seqan3/test/performance/simd_dna4.hpp index 2cf501163f..f04881abc9 100644 --- a/test/include/seqan3/test/performance/simd_dna4.hpp +++ b/test/include/seqan3/test/performance/simd_dna4.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/include/seqan3/test/performance/thread_utility.hpp b/test/include/seqan3/test/performance/thread_utility.hpp index b9a77c77c3..3885c252d0 100644 --- a/test/include/seqan3/test/performance/thread_utility.hpp +++ b/test/include/seqan3/test/performance/thread_utility.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/include/seqan3/test/performance/units.hpp b/test/include/seqan3/test/performance/units.hpp index 200c046410..22cffe16a2 100644 --- a/test/include/seqan3/test/performance/units.hpp +++ b/test/include/seqan3/test/performance/units.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides predefined custom units for google benchmark. diff --git a/test/include/seqan3/test/pretty_printing.hpp b/test/include/seqan3/test/pretty_printing.hpp index bb95f2e311..5e4ae9b4b6 100644 --- a/test/include/seqan3/test/pretty_printing.hpp +++ b/test/include/seqan3/test/pretty_printing.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides an hacky overload for the googletest PrintTo function. diff --git a/test/include/seqan3/test/range/container_test_template.hpp b/test/include/seqan3/test/range/container_test_template.hpp index 5aca0d9d98..d7c5f7f20c 100644 --- a/test/include/seqan3/test/range/container_test_template.hpp +++ b/test/include/seqan3/test/range/container_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/include/seqan3/test/sandboxed_path.hpp b/test/include/seqan3/test/sandboxed_path.hpp index 80a301f871..c6d2fc1ebd 100644 --- a/test/include/seqan3/test/sandboxed_path.hpp +++ b/test/include/seqan3/test/sandboxed_path.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides seqan3::test::sandboxed_path and related free functions. diff --git a/test/include/seqan3/test/seqan2.hpp b/test/include/seqan3/test/seqan2.hpp index 2732b15b17..ba23b77e8f 100644 --- a/test/include/seqan3/test/seqan2.hpp +++ b/test/include/seqan3/test/seqan2.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Adds seqan2 to the test environment. diff --git a/test/include/seqan3/test/simd_utility.hpp b/test/include/seqan3/test/simd_utility.hpp index b8bc2e1ad9..8b074f68a5 100644 --- a/test/include/seqan3/test/simd_utility.hpp +++ b/test/include/seqan3/test/simd_utility.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides test utilities for seqan3::simd::simd_type types. diff --git a/test/include/seqan3/test/snippet/create_temporary_snippet_file.hpp b/test/include/seqan3/test/snippet/create_temporary_snippet_file.hpp index 7624545c3b..02f5ddb110 100644 --- a/test/include/seqan3/test/snippet/create_temporary_snippet_file.hpp +++ b/test/include/seqan3/test/snippet/create_temporary_snippet_file.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/include/seqan3/test/streambuf.hpp b/test/include/seqan3/test/streambuf.hpp index 439f3c9a1f..1d3dc2155a 100644 --- a/test/include/seqan3/test/streambuf.hpp +++ b/test/include/seqan3/test/streambuf.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides a stream class with a custom sized underlying buffer. diff --git a/test/include/seqan3/test/tmp_directory.hpp b/test/include/seqan3/test/tmp_directory.hpp index 5c54689e38..b4c4615270 100644 --- a/test/include/seqan3/test/tmp_directory.hpp +++ b/test/include/seqan3/test/tmp_directory.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/macro_benchmark/CMakeLists.txt b/test/macro_benchmark/CMakeLists.txt index 16c5febd7d..d159f7ce5d 100644 --- a/test/macro_benchmark/CMakeLists.txt +++ b/test/macro_benchmark/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10...3.22) project (seqan3_test_unit CXX) diff --git a/test/macro_benchmark/example/CMakeLists.txt b/test/macro_benchmark/example/CMakeLists.txt index df8686d8a7..f941992526 100644 --- a/test/macro_benchmark/example/CMakeLists.txt +++ b/test/macro_benchmark/example/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_macro_benchmark ( memcpy_macro_benchmark.cpp REPETITIONS 10 # optional, default: 3 diff --git a/test/macro_benchmark/example/memcpy_macro_benchmark.cpp b/test/macro_benchmark/example/memcpy_macro_benchmark.cpp index e4945df361..3adfae0085 100644 --- a/test/macro_benchmark/example/memcpy_macro_benchmark.cpp +++ b/test/macro_benchmark/example/memcpy_macro_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/CMakeLists.txt b/test/performance/CMakeLists.txt index f5eff75689..d21b4c534c 100644 --- a/test/performance/CMakeLists.txt +++ b/test/performance/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10...3.22) project (seqan3_test_performance CXX) diff --git a/test/performance/alignment/CMakeLists.txt b/test/performance/alignment/CMakeLists.txt index 52742c02d6..21e8c4adae 100644 --- a/test/performance/alignment/CMakeLists.txt +++ b/test/performance/alignment/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (global_affine_alignment_banded_simd_benchmark.cpp) seqan3_benchmark (global_affine_alignment_benchmark.cpp) seqan3_benchmark (global_affine_alignment_parallel_benchmark.cpp) diff --git a/test/performance/alignment/edit_distance_benchmark_template.hpp b/test/performance/alignment/edit_distance_benchmark_template.hpp index 4f67eea420..08a36bd8bc 100644 --- a/test/performance/alignment/edit_distance_benchmark_template.hpp +++ b/test/performance/alignment/edit_distance_benchmark_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/performance/alignment/edit_distance_unbanded_benchmark.cpp b/test/performance/alignment/edit_distance_unbanded_benchmark.cpp index 392bc64c91..b7e5bec20c 100644 --- a/test/performance/alignment/edit_distance_unbanded_benchmark.cpp +++ b/test/performance/alignment/edit_distance_unbanded_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alignment/global_affine_alignment_banded_simd_benchmark.cpp b/test/performance/alignment/global_affine_alignment_banded_simd_benchmark.cpp index f3f8c56a30..80deb7f7aa 100644 --- a/test/performance/alignment/global_affine_alignment_banded_simd_benchmark.cpp +++ b/test/performance/alignment/global_affine_alignment_banded_simd_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alignment/global_affine_alignment_benchmark.cpp b/test/performance/alignment/global_affine_alignment_benchmark.cpp index d2a4263515..17315413ad 100644 --- a/test/performance/alignment/global_affine_alignment_benchmark.cpp +++ b/test/performance/alignment/global_affine_alignment_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alignment/global_affine_alignment_parallel_benchmark.cpp b/test/performance/alignment/global_affine_alignment_parallel_benchmark.cpp index fbdd9ce649..97835b9096 100644 --- a/test/performance/alignment/global_affine_alignment_parallel_benchmark.cpp +++ b/test/performance/alignment/global_affine_alignment_parallel_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alignment/global_affine_alignment_protein_simd_benchmark.cpp b/test/performance/alignment/global_affine_alignment_protein_simd_benchmark.cpp index 5a2df07e5c..0ebb310281 100644 --- a/test/performance/alignment/global_affine_alignment_protein_simd_benchmark.cpp +++ b/test/performance/alignment/global_affine_alignment_protein_simd_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alignment/global_affine_alignment_simd_benchmark.cpp b/test/performance/alignment/global_affine_alignment_simd_benchmark.cpp index eaa5ae5ada..f8bbcde1b4 100644 --- a/test/performance/alignment/global_affine_alignment_simd_benchmark.cpp +++ b/test/performance/alignment/global_affine_alignment_simd_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alignment/global_affine_alignment_simd_benchmark_template.hpp b/test/performance/alignment/global_affine_alignment_simd_benchmark_template.hpp index 4e0ef2f00b..aef6597ae4 100644 --- a/test/performance/alignment/global_affine_alignment_simd_benchmark_template.hpp +++ b/test/performance/alignment/global_affine_alignment_simd_benchmark_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alignment/local_affine_alignment_benchmark.cpp b/test/performance/alignment/local_affine_alignment_benchmark.cpp index 8c9964cea0..bd79c8f2f5 100644 --- a/test/performance/alignment/local_affine_alignment_benchmark.cpp +++ b/test/performance/alignment/local_affine_alignment_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alphabet/CMakeLists.txt b/test/performance/alphabet/CMakeLists.txt index edaebf0ed4..2b567673ef 100644 --- a/test/performance/alphabet/CMakeLists.txt +++ b/test/performance/alphabet/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_benchmark (alphabet_assign_char_benchmark.cpp) diff --git a/test/performance/alphabet/alphabet_assign_char_benchmark.cpp b/test/performance/alphabet/alphabet_assign_char_benchmark.cpp index e4acb7a602..e8f0560e6e 100644 --- a/test/performance/alphabet/alphabet_assign_char_benchmark.cpp +++ b/test/performance/alphabet/alphabet_assign_char_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alphabet/alphabet_assign_rank_benchmark.cpp b/test/performance/alphabet/alphabet_assign_rank_benchmark.cpp index 699eb863a6..590898e843 100644 --- a/test/performance/alphabet/alphabet_assign_rank_benchmark.cpp +++ b/test/performance/alphabet/alphabet_assign_rank_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alphabet/alphabet_complement_benchmark.cpp b/test/performance/alphabet/alphabet_complement_benchmark.cpp index e092b5e0c8..eab473478f 100644 --- a/test/performance/alphabet/alphabet_complement_benchmark.cpp +++ b/test/performance/alphabet/alphabet_complement_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /* Copied and adjusted from https://raw.githubusercontent.com/kloetzl/libdna/master/bench2/revcomp.cxx * Credits go to Fabian Klötzl (@kloetzl - https://github.com/kloetzl) diff --git a/test/performance/alphabet/alphabet_to_char_benchmark.cpp b/test/performance/alphabet/alphabet_to_char_benchmark.cpp index d8f3f449e8..878501a76c 100644 --- a/test/performance/alphabet/alphabet_to_char_benchmark.cpp +++ b/test/performance/alphabet/alphabet_to_char_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alphabet/alphabet_to_rank_benchmark.cpp b/test/performance/alphabet/alphabet_to_rank_benchmark.cpp index d24c19db0b..b27e7c6ea0 100644 --- a/test/performance/alphabet/alphabet_to_rank_benchmark.cpp +++ b/test/performance/alphabet/alphabet_to_rank_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alphabet/views/CMakeLists.txt b/test/performance/alphabet/views/CMakeLists.txt index f66e03beeb..6b8a016818 100644 --- a/test/performance/alphabet/views/CMakeLists.txt +++ b/test/performance/alphabet/views/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (view_translate_1D_benchmark.cpp) seqan3_benchmark (view_translate_2D_1D_benchmark.cpp) seqan3_benchmark (view_translate_2D_benchmark.cpp) diff --git a/test/performance/alphabet/views/view_translate_1D_benchmark.cpp b/test/performance/alphabet/views/view_translate_1D_benchmark.cpp index 86a19183d1..332abbe7f2 100644 --- a/test/performance/alphabet/views/view_translate_1D_benchmark.cpp +++ b/test/performance/alphabet/views/view_translate_1D_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alphabet/views/view_translate_2D_1D_benchmark.cpp b/test/performance/alphabet/views/view_translate_2D_1D_benchmark.cpp index e5443e9c5c..6af41d08a8 100644 --- a/test/performance/alphabet/views/view_translate_2D_1D_benchmark.cpp +++ b/test/performance/alphabet/views/view_translate_2D_1D_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/alphabet/views/view_translate_2D_benchmark.cpp b/test/performance/alphabet/views/view_translate_2D_benchmark.cpp index d9c1add62a..59a7a1b77d 100644 --- a/test/performance/alphabet/views/view_translate_2D_benchmark.cpp +++ b/test/performance/alphabet/views/view_translate_2D_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/example/CMakeLists.txt b/test/performance/example/CMakeLists.txt index ca036cb818..4073bc2ea2 100644 --- a/test/performance/example/CMakeLists.txt +++ b/test/performance/example/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (example_benchmark.cpp) diff --git a/test/performance/example/example_benchmark.cpp b/test/performance/example/example_benchmark.cpp index d5645fb231..112c7f5df5 100644 --- a/test/performance/example/example_benchmark.cpp +++ b/test/performance/example/example_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/io/CMakeLists.txt b/test/performance/io/CMakeLists.txt index 9e6313c860..34aa92677b 100644 --- a/test/performance/io/CMakeLists.txt +++ b/test/performance/io/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_benchmark (format_fasta_benchmark.cpp) diff --git a/test/performance/io/detail/CMakeLists.txt b/test/performance/io/detail/CMakeLists.txt index 3274e002e2..2264a6eaba 100644 --- a/test/performance/io/detail/CMakeLists.txt +++ b/test/performance/io/detail/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (view_take_until_benchmark.cpp) diff --git a/test/performance/io/detail/view_take_until_benchmark.cpp b/test/performance/io/detail/view_take_until_benchmark.cpp index 9ecb3998e7..852650cac8 100644 --- a/test/performance/io/detail/view_take_until_benchmark.cpp +++ b/test/performance/io/detail/view_take_until_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/io/format_fasta_benchmark.cpp b/test/performance/io/format_fasta_benchmark.cpp index c8cc3e3bfc..eaead8a406 100644 --- a/test/performance/io/format_fasta_benchmark.cpp +++ b/test/performance/io/format_fasta_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #if __has_include() # include diff --git a/test/performance/io/format_fasta_no_performance_benchmark.cpp b/test/performance/io/format_fasta_no_performance_benchmark.cpp index 3283499b2e..8ce16bf10d 100644 --- a/test/performance/io/format_fasta_no_performance_benchmark.cpp +++ b/test/performance/io/format_fasta_no_performance_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /* This file includes the same performance tests as format_fasta_benchmark.cpp * but sets the `SEQAN3_WORKAROUND_VIEW_PERFORMANCE` variable first. diff --git a/test/performance/io/format_fastq_benchmark.cpp b/test/performance/io/format_fastq_benchmark.cpp index 977f51373d..f61c3d69d7 100644 --- a/test/performance/io/format_fastq_benchmark.cpp +++ b/test/performance/io/format_fastq_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/io/format_fastq_no_performance_benchmark.cpp b/test/performance/io/format_fastq_no_performance_benchmark.cpp index 96eb473206..a290f68672 100644 --- a/test/performance/io/format_fastq_no_performance_benchmark.cpp +++ b/test/performance/io/format_fastq_no_performance_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /* This file includes the same performance tests as format_fastq_benchmark.cpp * but sets the `SEQAN3_WORKAROUND_VIEW_PERFORMANCE` variable first. diff --git a/test/performance/io/format_sam_benchmark.cpp b/test/performance/io/format_sam_benchmark.cpp index 21009c053a..dda9b81f4a 100644 --- a/test/performance/io/format_sam_benchmark.cpp +++ b/test/performance/io/format_sam_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/io/format_vienna_benchmark.cpp b/test/performance/io/format_vienna_benchmark.cpp index 3c83c48579..fe44492fae 100644 --- a/test/performance/io/format_vienna_benchmark.cpp +++ b/test/performance/io/format_vienna_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/io/lowlevel_stream_input_benchmark.cpp b/test/performance/io/lowlevel_stream_input_benchmark.cpp index 8f00da87dc..908421cb5a 100644 --- a/test/performance/io/lowlevel_stream_input_benchmark.cpp +++ b/test/performance/io/lowlevel_stream_input_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/io/lowlevel_stream_output_benchmark.cpp b/test/performance/io/lowlevel_stream_output_benchmark.cpp index 9bfea9932d..01dfd057e2 100644 --- a/test/performance/io/lowlevel_stream_output_benchmark.cpp +++ b/test/performance/io/lowlevel_stream_output_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/io/stream_input_benchmark.cpp b/test/performance/io/stream_input_benchmark.cpp index d9f636e2f9..a68b7855c8 100644 --- a/test/performance/io/stream_input_benchmark.cpp +++ b/test/performance/io/stream_input_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/io/stream_output_benchmark.cpp b/test/performance/io/stream_output_benchmark.cpp index 463fcd134c..d40aba6b58 100644 --- a/test/performance/io/stream_output_benchmark.cpp +++ b/test/performance/io/stream_output_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/CMakeLists.txt b/test/performance/range/CMakeLists.txt index bf8f02f620..c77f2fd476 100644 --- a/test/performance/range/CMakeLists.txt +++ b/test/performance/range/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_benchmark (container_assignment_benchmark.cpp) diff --git a/test/performance/range/container_assignment_benchmark.cpp b/test/performance/range/container_assignment_benchmark.cpp index e22ad21e64..0e4d1731b5 100644 --- a/test/performance/range/container_assignment_benchmark.cpp +++ b/test/performance/range/container_assignment_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/container_push_back_benchmark.cpp b/test/performance/range/container_push_back_benchmark.cpp index b49bbdeada..277ff54143 100644 --- a/test/performance/range/container_push_back_benchmark.cpp +++ b/test/performance/range/container_push_back_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/container_seq_read_benchmark.cpp b/test/performance/range/container_seq_read_benchmark.cpp index aa7d57d978..04780b59bc 100644 --- a/test/performance/range/container_seq_read_benchmark.cpp +++ b/test/performance/range/container_seq_read_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/container_seq_write_benchmark.cpp b/test/performance/range/container_seq_write_benchmark.cpp index f7d9c77663..1c5ad3356c 100644 --- a/test/performance/range/container_seq_write_benchmark.cpp +++ b/test/performance/range/container_seq_write_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/gap_decorator_helper.hpp b/test/performance/range/gap_decorator_helper.hpp index cd5d45c193..c62b6fd462 100644 --- a/test/performance/range/gap_decorator_helper.hpp +++ b/test/performance/range/gap_decorator_helper.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/gap_decorator_rand_read_benchmark.cpp b/test/performance/range/gap_decorator_rand_read_benchmark.cpp index 8e96647f8e..4fc35345bc 100644 --- a/test/performance/range/gap_decorator_rand_read_benchmark.cpp +++ b/test/performance/range/gap_decorator_rand_read_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/gap_decorator_rand_write_benchmark.cpp b/test/performance/range/gap_decorator_rand_write_benchmark.cpp index ff448902ed..d4b087b20f 100644 --- a/test/performance/range/gap_decorator_rand_write_benchmark.cpp +++ b/test/performance/range/gap_decorator_rand_write_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/gap_decorator_seq_read_benchmark.cpp b/test/performance/range/gap_decorator_seq_read_benchmark.cpp index dcd436d712..4be2e19d46 100644 --- a/test/performance/range/gap_decorator_seq_read_benchmark.cpp +++ b/test/performance/range/gap_decorator_seq_read_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/gap_decorator_seq_write_benchmark.cpp b/test/performance/range/gap_decorator_seq_write_benchmark.cpp index a6409748a8..74a5ababea 100644 --- a/test/performance/range/gap_decorator_seq_write_benchmark.cpp +++ b/test/performance/range/gap_decorator_seq_write_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/views/CMakeLists.txt b/test/performance/range/views/CMakeLists.txt index ce65cba931..988fb4d976 100644 --- a/test/performance/range/views/CMakeLists.txt +++ b/test/performance/range/views/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (view_all_benchmark.cpp) seqan3_benchmark (view_drop_benchmark.cpp) seqan3_benchmark (view_drop_view_take_benchmark.cpp) diff --git a/test/performance/range/views/view_all_benchmark.cpp b/test/performance/range/views/view_all_benchmark.cpp index 2dda431a4b..1c9341e99e 100644 --- a/test/performance/range/views/view_all_benchmark.cpp +++ b/test/performance/range/views/view_all_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/views/view_drop_benchmark.cpp b/test/performance/range/views/view_drop_benchmark.cpp index 7e3d303394..74a44ffa16 100644 --- a/test/performance/range/views/view_drop_benchmark.cpp +++ b/test/performance/range/views/view_drop_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/views/view_drop_view_take_benchmark.cpp b/test/performance/range/views/view_drop_view_take_benchmark.cpp index 38cd8c2351..15d694a62e 100644 --- a/test/performance/range/views/view_drop_view_take_benchmark.cpp +++ b/test/performance/range/views/view_drop_view_take_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/views/view_filter_benchmark.cpp b/test/performance/range/views/view_filter_benchmark.cpp index 7c10b355bc..7b9e8a1c96 100644 --- a/test/performance/range/views/view_filter_benchmark.cpp +++ b/test/performance/range/views/view_filter_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/range/views/view_take_benchmark.cpp b/test/performance/range/views/view_take_benchmark.cpp index 1924434afd..cb3e67d75c 100644 --- a/test/performance/range/views/view_take_benchmark.cpp +++ b/test/performance/range/views/view_take_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/search/CMakeLists.txt b/test/performance/search/CMakeLists.txt index ff14622572..82ce477663 100644 --- a/test/performance/search/CMakeLists.txt +++ b/test/performance/search/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (index_construction_benchmark.cpp) seqan3_benchmark (search_benchmark.cpp) diff --git a/test/performance/search/dream_index/CMakeLists.txt b/test/performance/search/dream_index/CMakeLists.txt index fc852717a9..22cfdf4710 100644 --- a/test/performance/search/dream_index/CMakeLists.txt +++ b/test/performance/search/dream_index/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (interleaved_bloom_filter_benchmark.cpp) diff --git a/test/performance/search/dream_index/interleaved_bloom_filter_benchmark.cpp b/test/performance/search/dream_index/interleaved_bloom_filter_benchmark.cpp index 13fdfa68e0..5c5d34424c 100644 --- a/test/performance/search/dream_index/interleaved_bloom_filter_benchmark.cpp +++ b/test/performance/search/dream_index/interleaved_bloom_filter_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/search/index_construction_benchmark.cpp b/test/performance/search/index_construction_benchmark.cpp index 05df89fd0e..00ba998e3c 100644 --- a/test/performance/search/index_construction_benchmark.cpp +++ b/test/performance/search/index_construction_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/search/search_benchmark.cpp b/test/performance/search/search_benchmark.cpp index 481fec09b0..fad117b502 100644 --- a/test/performance/search/search_benchmark.cpp +++ b/test/performance/search/search_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/search/views/CMakeLists.txt b/test/performance/search/views/CMakeLists.txt index 6d6f723b65..cb5549677f 100644 --- a/test/performance/search/views/CMakeLists.txt +++ b/test/performance/search/views/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (view_kmer_hash_benchmark.cpp) seqan3_benchmark (view_minimiser_hash_benchmark.cpp) diff --git a/test/performance/search/views/view_kmer_hash_benchmark.cpp b/test/performance/search/views/view_kmer_hash_benchmark.cpp index bd4b690ad6..d7c0150e03 100644 --- a/test/performance/search/views/view_kmer_hash_benchmark.cpp +++ b/test/performance/search/views/view_kmer_hash_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/search/views/view_minimiser_hash_benchmark.cpp b/test/performance/search/views/view_minimiser_hash_benchmark.cpp index 351a94abc4..2d7c6e8796 100644 --- a/test/performance/search/views/view_minimiser_hash_benchmark.cpp +++ b/test/performance/search/views/view_minimiser_hash_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/std/CMakeLists.txt b/test/performance/std/CMakeLists.txt index 20b2ec332f..33e65997da 100644 --- a/test/performance/std/CMakeLists.txt +++ b/test/performance/std/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (bit_benchmark.cpp) seqan3_benchmark (charconv_to_chars_benchmark.cpp) seqan3_benchmark (charconv_from_chars_benchmark.cpp) diff --git a/test/performance/std/bit_benchmark.cpp b/test/performance/std/bit_benchmark.cpp index 305f5ae7c3..4c88bd8f4a 100644 --- a/test/performance/std/bit_benchmark.cpp +++ b/test/performance/std/bit_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/std/charconv_from_chars_benchmark.cpp b/test/performance/std/charconv_from_chars_benchmark.cpp index 959d7334ea..313a6e5482 100644 --- a/test/performance/std/charconv_from_chars_benchmark.cpp +++ b/test/performance/std/charconv_from_chars_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/std/charconv_to_chars_benchmark.cpp b/test/performance/std/charconv_to_chars_benchmark.cpp index c28322588c..a27039d7af 100644 --- a/test/performance/std/charconv_to_chars_benchmark.cpp +++ b/test/performance/std/charconv_to_chars_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/utility/CMakeLists.txt b/test/performance/utility/CMakeLists.txt index 9ddf96d30c..eb99a605f5 100644 --- a/test/performance/utility/CMakeLists.txt +++ b/test/performance/utility/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () diff --git a/test/performance/utility/bloom_filter/CMakeLists.txt b/test/performance/utility/bloom_filter/CMakeLists.txt index e86e599e83..7aae3fb0c1 100644 --- a/test/performance/utility/bloom_filter/CMakeLists.txt +++ b/test/performance/utility/bloom_filter/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (bloom_filter_benchmark.cpp) diff --git a/test/performance/utility/bloom_filter/bloom_filter_benchmark.cpp b/test/performance/utility/bloom_filter/bloom_filter_benchmark.cpp index 3b20ab70cb..bb0ca16bd9 100644 --- a/test/performance/utility/bloom_filter/bloom_filter_benchmark.cpp +++ b/test/performance/utility/bloom_filter/bloom_filter_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/utility/char_operations/CMakeLists.txt b/test/performance/utility/char_operations/CMakeLists.txt index 5afeaed4dc..84bf388b4f 100644 --- a/test/performance/utility/char_operations/CMakeLists.txt +++ b/test/performance/utility/char_operations/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (char_predicate_benchmark.cpp) diff --git a/test/performance/utility/char_operations/char_predicate_benchmark.cpp b/test/performance/utility/char_operations/char_predicate_benchmark.cpp index d026a9aa2a..6f4f10f63f 100644 --- a/test/performance/utility/char_operations/char_predicate_benchmark.cpp +++ b/test/performance/utility/char_operations/char_predicate_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/utility/simd/CMakeLists.txt b/test/performance/utility/simd/CMakeLists.txt index e2707315fb..1e570194bd 100644 --- a/test/performance/utility/simd/CMakeLists.txt +++ b/test/performance/utility/simd/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_benchmark (simd_algorithm_benchmark.cpp) diff --git a/test/performance/utility/simd/simd_algorithm_benchmark.cpp b/test/performance/utility/simd/simd_algorithm_benchmark.cpp index a6f967c38a..b78bf9a315 100644 --- a/test/performance/utility/simd/simd_algorithm_benchmark.cpp +++ b/test/performance/utility/simd/simd_algorithm_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/utility/simd/views/CMakeLists.txt b/test/performance/utility/simd/views/CMakeLists.txt index 5139acc342..dbdf9d83d6 100644 --- a/test/performance/utility/simd/views/CMakeLists.txt +++ b/test/performance/utility/simd/views/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_benchmark (iota_simd_benchmark.cpp) seqan3_benchmark (to_simd_benchmark.cpp) diff --git a/test/performance/utility/simd/views/iota_simd_benchmark.cpp b/test/performance/utility/simd/views/iota_simd_benchmark.cpp index 13c24152cc..b6b1cd31fe 100644 --- a/test/performance/utility/simd/views/iota_simd_benchmark.cpp +++ b/test/performance/utility/simd/views/iota_simd_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/performance/utility/simd/views/to_simd_benchmark.cpp b/test/performance/utility/simd/views/to_simd_benchmark.cpp index 32e29ef793..9d0d48dd6a 100644 --- a/test/performance/utility/simd/views/to_simd_benchmark.cpp +++ b/test/performance/utility/simd/views/to_simd_benchmark.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/scripts/add_snippets_to_cookbook.sh b/test/scripts/add_snippets_to_cookbook.sh index f22139b9cc..2b9955fe8d 100755 --- a/test/scripts/add_snippets_to_cookbook.sh +++ b/test/scripts/add_snippets_to_cookbook.sh @@ -1,11 +1,9 @@ #!/usr/bin/env bash -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- -# + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + # Usage: create_all_hpp.sh # Will update the cookbook to include all snippets of the documentation. diff --git a/test/scripts/check_include_order.pl b/test/scripts/check_include_order.pl index 2222ec40ef..3cff7b52fa 100755 --- a/test/scripts/check_include_order.pl +++ b/test/scripts/check_include_order.pl @@ -1,11 +1,9 @@ #!/usr/bin/env perl -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- -# + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + # Usage check_include_order.pl [] [] .... # Will output the names of the files that have incorrect include order. # diff --git a/test/scripts/create_all_hpp.sh b/test/scripts/create_all_hpp.sh index 6ccd520326..990309f879 100755 --- a/test/scripts/create_all_hpp.sh +++ b/test/scripts/create_all_hpp.sh @@ -1,11 +1,9 @@ #!/usr/bin/env bash -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- -# + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + # Usage: create_all_hpp.sh # Will create all.hpp in all subdirectories diff --git a/test/scripts/link_check.sh b/test/scripts/link_check.sh index f2a8314e81..18a5b87b73 100644 --- a/test/scripts/link_check.sh +++ b/test/scripts/link_check.sh @@ -1,11 +1,9 @@ #!/usr/bin/env bash -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- -# + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + # Usage: link_check.sh # Will output the status of links in the repository. # diff --git a/test/scripts/update_copyright.sh b/test/scripts/update_copyright.sh index 3015a63f48..5b9cfecb34 100755 --- a/test/scripts/update_copyright.sh +++ b/test/scripts/update_copyright.sh @@ -1,25 +1,23 @@ #!/usr/bin/env bash -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- -# + +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + set -Eeuo pipefail usage="\ SYNOPSIS - update_copyright.sh ] []... + update_copyright.sh [] []... DESCRIPTION Updates the copyright year of files that are formatted in a certain way. And prints out the copyright years that it ignores. EXAMPLES - ./test/scripts/update_copyright.sh 2020 2021 \$(find . -not -path '*/\.*' -and -not -path '*/submodules/*' -and -not -path '*/build/*' -and -not -iname '*.patch' -type f) + ./test/scripts/update_copyright.sh 2020 2021 \$(find . -not -path '*/\.git/**' -and -not -path '*/submodules/*' -and -not -path '*/build/*' -and -not -iname '*.patch' -type f) Updates all copyright entries from 2020 to 2021. Only scans non hidden directories. Does not scan build and - submodules directory. Ignores patches in test/api_stability. + submodules directory. " if [ $# -eq 0 ]; then @@ -34,6 +32,6 @@ shift 2 echo "Setting copyright dates from ${oldyear} to ${year}" for file in "$@"; do - perl -i -pe 's/^(.*Copyright \(c\) [0-9]{4}-)'${oldyear}'(, Knut Reinert.*$)/${1}'${year}'${2}/' $file - perl -ne 'print "'$file':$.: $_" if (/^.*Copyright.*'${oldyear}'.*$/);' $file + perl -i -pe 's/^(.*SPDX-FileCopyrightText: [0-9]{4}-)'${oldyear}'(,? Knut Reinert.*$)/${1}'${year}'${2}/' $file + perl -ne 'print "'$file':$.: $_" if (/^.*SPDX-FileCopyrightText.*'${oldyear}'.*$/);' $file done diff --git a/test/seqan3-test.cmake b/test/seqan3-test.cmake index 1d383783bd..d56035daef 100644 --- a/test/seqan3-test.cmake +++ b/test/seqan3-test.cmake @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause # This file provides functionality common to the different test modules used by # SeqAn3. To build tests, run cmake on one of the sub-folders in this directory diff --git a/test/snippet/CMakeLists.txt b/test/snippet/CMakeLists.txt index 7bae4d6483..a601b0af87 100644 --- a/test/snippet/CMakeLists.txt +++ b/test/snippet/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10...3.22) project (seqan3_test_snippet CXX) diff --git a/test/snippet/alignment/cigar_conversion/alignment_from_cigar.cpp b/test/snippet/alignment/cigar_conversion/alignment_from_cigar.cpp index f27f5a7222..be56e7bf1d 100644 --- a/test/snippet/alignment/cigar_conversion/alignment_from_cigar.cpp +++ b/test/snippet/alignment/cigar_conversion/alignment_from_cigar.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/cigar_conversion/alignment_from_cigar.err.license b/test/snippet/alignment/cigar_conversion/alignment_from_cigar.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/cigar_conversion/alignment_from_cigar.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/cigar_conversion/alignment_from_cigar_io.cpp b/test/snippet/alignment/cigar_conversion/alignment_from_cigar_io.cpp index 337c27e425..24c9772573 100644 --- a/test/snippet/alignment/cigar_conversion/alignment_from_cigar_io.cpp +++ b/test/snippet/alignment/cigar_conversion/alignment_from_cigar_io.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/cigar_conversion/alignment_from_cigar_io.err.license b/test/snippet/alignment/cigar_conversion/alignment_from_cigar_io.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/cigar_conversion/alignment_from_cigar_io.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/cigar_conversion/cigar_from_alignment.cpp b/test/snippet/alignment/cigar_conversion/cigar_from_alignment.cpp index dfd189badd..56a186742d 100644 --- a/test/snippet/alignment/cigar_conversion/cigar_from_alignment.cpp +++ b/test/snippet/alignment/cigar_conversion/cigar_from_alignment.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/cigar_conversion/cigar_from_alignment.err.license b/test/snippet/alignment/cigar_conversion/cigar_from_alignment.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/cigar_conversion/cigar_from_alignment.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/cigar_conversion/cigar_from_alignment_with_clipping.cpp b/test/snippet/alignment/cigar_conversion/cigar_from_alignment_with_clipping.cpp index 4924abda3c..c25cde8ed6 100644 --- a/test/snippet/alignment/cigar_conversion/cigar_from_alignment_with_clipping.cpp +++ b/test/snippet/alignment/cigar_conversion/cigar_from_alignment_with_clipping.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/cigar_conversion/cigar_from_alignment_with_clipping.err.license b/test/snippet/alignment/cigar_conversion/cigar_from_alignment_with_clipping.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/cigar_conversion/cigar_from_alignment_with_clipping.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/configuration/align_cfg_band_example.cpp b/test/snippet/alignment/configuration/align_cfg_band_example.cpp index a76c4eb29e..4842b895a2 100644 --- a/test/snippet/alignment/configuration/align_cfg_band_example.cpp +++ b/test/snippet/alignment/configuration/align_cfg_band_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/configuration/align_cfg_edit_example.cpp b/test/snippet/alignment/configuration/align_cfg_edit_example.cpp index e0c64fa139..5308dddfad 100644 --- a/test/snippet/alignment/configuration/align_cfg_edit_example.cpp +++ b/test/snippet/alignment/configuration/align_cfg_edit_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_gap_cost_affine_example.cpp b/test/snippet/alignment/configuration/align_cfg_gap_cost_affine_example.cpp index 1f66a12a4f..1c14695007 100644 --- a/test/snippet/alignment/configuration/align_cfg_gap_cost_affine_example.cpp +++ b/test/snippet/alignment/configuration/align_cfg_gap_cost_affine_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_gap_cost_affine_example.out.license b/test/snippet/alignment/configuration/align_cfg_gap_cost_affine_example.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/configuration/align_cfg_gap_cost_affine_example.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/configuration/align_cfg_method_global.cpp b/test/snippet/alignment/configuration/align_cfg_method_global.cpp index 0e1f927575..997bd01f26 100644 --- a/test/snippet/alignment/configuration/align_cfg_method_global.cpp +++ b/test/snippet/alignment/configuration/align_cfg_method_global.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_method_global.err.license b/test/snippet/alignment/configuration/align_cfg_method_global.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/configuration/align_cfg_method_global.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/configuration/align_cfg_method_local.cpp b/test/snippet/alignment/configuration/align_cfg_method_local.cpp index 05e8b8a330..4a070e5ed7 100644 --- a/test/snippet/alignment/configuration/align_cfg_method_local.cpp +++ b/test/snippet/alignment/configuration/align_cfg_method_local.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_method_local.err.license b/test/snippet/alignment/configuration/align_cfg_method_local.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/configuration/align_cfg_method_local.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/configuration/align_cfg_min_score_example.cpp b/test/snippet/alignment/configuration/align_cfg_min_score_example.cpp index fa75a876b8..be3bd9aa41 100644 --- a/test/snippet/alignment/configuration/align_cfg_min_score_example.cpp +++ b/test/snippet/alignment/configuration/align_cfg_min_score_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_on_result.cpp b/test/snippet/alignment/configuration/align_cfg_on_result.cpp index b63e668dc1..9a5f8b389b 100644 --- a/test/snippet/alignment/configuration/align_cfg_on_result.cpp +++ b/test/snippet/alignment/configuration/align_cfg_on_result.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_output_alignment.cpp b/test/snippet/alignment/configuration/align_cfg_output_alignment.cpp index 8c515fc68a..ba11da04d8 100644 --- a/test/snippet/alignment/configuration/align_cfg_output_alignment.cpp +++ b/test/snippet/alignment/configuration/align_cfg_output_alignment.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/configuration/align_cfg_output_begin_position.cpp b/test/snippet/alignment/configuration/align_cfg_output_begin_position.cpp index ec59787de0..56b9699136 100644 --- a/test/snippet/alignment/configuration/align_cfg_output_begin_position.cpp +++ b/test/snippet/alignment/configuration/align_cfg_output_begin_position.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/configuration/align_cfg_output_end_position.cpp b/test/snippet/alignment/configuration/align_cfg_output_end_position.cpp index 2d333be731..66fb2f330b 100644 --- a/test/snippet/alignment/configuration/align_cfg_output_end_position.cpp +++ b/test/snippet/alignment/configuration/align_cfg_output_end_position.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/configuration/align_cfg_output_examples.cpp b/test/snippet/alignment/configuration/align_cfg_output_examples.cpp index dd6040bed3..bfb3a36f60 100644 --- a/test/snippet/alignment/configuration/align_cfg_output_examples.cpp +++ b/test/snippet/alignment/configuration/align_cfg_output_examples.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_output_examples.err.license b/test/snippet/alignment/configuration/align_cfg_output_examples.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/configuration/align_cfg_output_examples.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/configuration/align_cfg_output_score.cpp b/test/snippet/alignment/configuration/align_cfg_output_score.cpp index b979985b6f..9c6e244ba2 100644 --- a/test/snippet/alignment/configuration/align_cfg_output_score.cpp +++ b/test/snippet/alignment/configuration/align_cfg_output_score.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/configuration/align_cfg_output_sequence1_id.cpp b/test/snippet/alignment/configuration/align_cfg_output_sequence1_id.cpp index 9ef417225c..c2ac79ac69 100644 --- a/test/snippet/alignment/configuration/align_cfg_output_sequence1_id.cpp +++ b/test/snippet/alignment/configuration/align_cfg_output_sequence1_id.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/configuration/align_cfg_output_sequence2_id.cpp b/test/snippet/alignment/configuration/align_cfg_output_sequence2_id.cpp index 3e327057ad..c8aaa61b4e 100644 --- a/test/snippet/alignment/configuration/align_cfg_output_sequence2_id.cpp +++ b/test/snippet/alignment/configuration/align_cfg_output_sequence2_id.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/configuration/align_cfg_parallel_example.cpp b/test/snippet/alignment/configuration/align_cfg_parallel_example.cpp index c6e584eb89..fd3a5ac66e 100644 --- a/test/snippet/alignment/configuration/align_cfg_parallel_example.cpp +++ b/test/snippet/alignment/configuration/align_cfg_parallel_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_score_type.cpp b/test/snippet/alignment/configuration/align_cfg_score_type.cpp index 2461cccec0..d2cbd2dc20 100644 --- a/test/snippet/alignment/configuration/align_cfg_score_type.cpp +++ b/test/snippet/alignment/configuration/align_cfg_score_type.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/configuration/align_cfg_vectorised_example.cpp b/test/snippet/alignment/configuration/align_cfg_vectorised_example.cpp index 38dbf79d89..6e07b80197 100644 --- a/test/snippet/alignment/configuration/align_cfg_vectorised_example.cpp +++ b/test/snippet/alignment/configuration/align_cfg_vectorised_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/configuration/minimal_alignment_config.cpp b/test/snippet/alignment/configuration/minimal_alignment_config.cpp index 0e8b5b1a5c..593c510759 100644 --- a/test/snippet/alignment/configuration/minimal_alignment_config.cpp +++ b/test/snippet/alignment/configuration/minimal_alignment_config.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/configuration/minimal_alignment_config.err.license b/test/snippet/alignment/configuration/minimal_alignment_config.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/configuration/minimal_alignment_config.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/matrix/detail/alignment_matrix_column_major_range_base.cpp b/test/snippet/alignment/matrix/detail/alignment_matrix_column_major_range_base.cpp index 37fc2410d5..639b2ec6c9 100644 --- a/test/snippet/alignment/matrix/detail/alignment_matrix_column_major_range_base.cpp +++ b/test/snippet/alignment/matrix/detail/alignment_matrix_column_major_range_base.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/matrix/detail/alignment_matrix_column_major_range_base.err.license b/test/snippet/alignment/matrix/detail/alignment_matrix_column_major_range_base.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/matrix/detail/alignment_matrix_column_major_range_base.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/matrix/detail/debug_matrix_score.cpp b/test/snippet/alignment/matrix/detail/debug_matrix_score.cpp index a32d0364d5..3838bcfb36 100644 --- a/test/snippet/alignment/matrix/detail/debug_matrix_score.cpp +++ b/test/snippet/alignment/matrix/detail/debug_matrix_score.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/matrix/detail/debug_matrix_score.err.license b/test/snippet/alignment/matrix/detail/debug_matrix_score.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/matrix/detail/debug_matrix_score.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/matrix/detail/debug_matrix_trace.cpp b/test/snippet/alignment/matrix/detail/debug_matrix_trace.cpp index 0f5f295b49..01e1077cdb 100644 --- a/test/snippet/alignment/matrix/detail/debug_matrix_trace.cpp +++ b/test/snippet/alignment/matrix/detail/debug_matrix_trace.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/matrix/detail/debug_matrix_trace.err.license b/test/snippet/alignment/matrix/detail/debug_matrix_trace.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/matrix/detail/debug_matrix_trace.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/pairwise/align_pairwise.cpp b/test/snippet/alignment/pairwise/align_pairwise.cpp index 917fdf48bb..1d568b5f89 100644 --- a/test/snippet/alignment/pairwise/align_pairwise.cpp +++ b/test/snippet/alignment/pairwise/align_pairwise.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //![start] #include diff --git a/test/snippet/alignment/pairwise/align_pairwise.err.license b/test/snippet/alignment/pairwise/align_pairwise.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/pairwise/align_pairwise.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/pairwise/align_pairwise_range.cpp b/test/snippet/alignment/pairwise/align_pairwise_range.cpp index 3a43b4376e..ef9f0eeb8c 100644 --- a/test/snippet/alignment/pairwise/align_pairwise_range.cpp +++ b/test/snippet/alignment/pairwise/align_pairwise_range.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/pairwise/align_pairwise_range.err.license b/test/snippet/alignment/pairwise/align_pairwise_range.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/pairwise/align_pairwise_range.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/pairwise/alignment_configurator.cpp b/test/snippet/alignment/pairwise/alignment_configurator.cpp index 7af1ee5a41..ff2d100a84 100644 --- a/test/snippet/alignment/pairwise/alignment_configurator.cpp +++ b/test/snippet/alignment/pairwise/alignment_configurator.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alignment/pairwise/parallel_align_pairwise_with_callback.cpp b/test/snippet/alignment/pairwise/parallel_align_pairwise_with_callback.cpp index 9d12f2b9c8..b45da80788 100644 --- a/test/snippet/alignment/pairwise/parallel_align_pairwise_with_callback.cpp +++ b/test/snippet/alignment/pairwise/parallel_align_pairwise_with_callback.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alignment/pairwise/parallel_align_pairwise_with_callback.err.license b/test/snippet/alignment/pairwise/parallel_align_pairwise_with_callback.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/pairwise/parallel_align_pairwise_with_callback.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/scoring/aminoacid_scoring_scheme.cpp b/test/snippet/alignment/scoring/aminoacid_scoring_scheme.cpp index 83e8196788..67589a5781 100644 --- a/test/snippet/alignment/scoring/aminoacid_scoring_scheme.cpp +++ b/test/snippet/alignment/scoring/aminoacid_scoring_scheme.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/scoring/aminoacid_scoring_scheme.err.license b/test/snippet/alignment/scoring/aminoacid_scoring_scheme.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/scoring/aminoacid_scoring_scheme.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alignment/scoring/nucleotide_scoring_scheme.cpp b/test/snippet/alignment/scoring/nucleotide_scoring_scheme.cpp index 2d3fc1e7c8..21f5923922 100644 --- a/test/snippet/alignment/scoring/nucleotide_scoring_scheme.cpp +++ b/test/snippet/alignment/scoring/nucleotide_scoring_scheme.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alignment/scoring/nucleotide_scoring_scheme.err.license b/test/snippet/alignment/scoring/nucleotide_scoring_scheme.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alignment/scoring/nucleotide_scoring_scheme.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/all_ambiguous.cpp b/test/snippet/alphabet/all_ambiguous.cpp index 2049e163e4..bcf13b0791 100644 --- a/test/snippet/alphabet/all_ambiguous.cpp +++ b/test/snippet/alphabet/all_ambiguous.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/all_literal.cpp b/test/snippet/alphabet/all_literal.cpp index 68ee6a8575..6bf0c422f9 100644 --- a/test/snippet/alphabet/all_literal.cpp +++ b/test/snippet/alphabet/all_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/all_nonambiguous.cpp b/test/snippet/alphabet/all_nonambiguous.cpp index 270d8f46f8..22bdcb6e4b 100644 --- a/test/snippet/alphabet/all_nonambiguous.cpp +++ b/test/snippet/alphabet/all_nonambiguous.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/all_nonambiguous.err.license b/test/snippet/alphabet/all_nonambiguous.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/all_nonambiguous.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/all_nonambiguous.out.license b/test/snippet/alphabet/all_nonambiguous.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/all_nonambiguous.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/alphabet_base.cpp b/test/snippet/alphabet/alphabet_base.cpp index 30bc2b5e73..c32d9fface 100644 --- a/test/snippet/alphabet/alphabet_base.cpp +++ b/test/snippet/alphabet/alphabet_base.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include // seqan3::to_lower diff --git a/test/snippet/alphabet/alphabet_size.cpp b/test/snippet/alphabet/alphabet_size.cpp index fb7bf18a70..2f42f0568b 100644 --- a/test/snippet/alphabet/alphabet_size.cpp +++ b/test/snippet/alphabet/alphabet_size.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/alphabet_size.out.license b/test/snippet/alphabet/alphabet_size.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/alphabet_size.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/aminoacid/aa10li.cpp b/test/snippet/alphabet/aminoacid/aa10li.cpp index 59d7c2028f..3f6f1defae 100644 --- a/test/snippet/alphabet/aminoacid/aa10li.cpp +++ b/test/snippet/alphabet/aminoacid/aa10li.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/aminoacid/aa10li.err.license b/test/snippet/alphabet/aminoacid/aa10li.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/aminoacid/aa10li.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/aminoacid/aa10li_char_literal.cpp b/test/snippet/alphabet/aminoacid/aa10li_char_literal.cpp index 65dda387e1..9aa7849360 100644 --- a/test/snippet/alphabet/aminoacid/aa10li_char_literal.cpp +++ b/test/snippet/alphabet/aminoacid/aa10li_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/aminoacid/aa10li_literal.cpp b/test/snippet/alphabet/aminoacid/aa10li_literal.cpp index 4d525ca187..f3edc3d282 100644 --- a/test/snippet/alphabet/aminoacid/aa10li_literal.cpp +++ b/test/snippet/alphabet/aminoacid/aa10li_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/aminoacid/aa10murphy.cpp b/test/snippet/alphabet/aminoacid/aa10murphy.cpp index f5d25605d4..6102a94cba 100644 --- a/test/snippet/alphabet/aminoacid/aa10murphy.cpp +++ b/test/snippet/alphabet/aminoacid/aa10murphy.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/aminoacid/aa10murphy.err.license b/test/snippet/alphabet/aminoacid/aa10murphy.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/aminoacid/aa10murphy.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/aminoacid/aa10murphy_char_literal.cpp b/test/snippet/alphabet/aminoacid/aa10murphy_char_literal.cpp index ef327b0c90..74aadec75a 100644 --- a/test/snippet/alphabet/aminoacid/aa10murphy_char_literal.cpp +++ b/test/snippet/alphabet/aminoacid/aa10murphy_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/aminoacid/aa10murphy_literal.cpp b/test/snippet/alphabet/aminoacid/aa10murphy_literal.cpp index 6994f72ea0..0236658a09 100644 --- a/test/snippet/alphabet/aminoacid/aa10murphy_literal.cpp +++ b/test/snippet/alphabet/aminoacid/aa10murphy_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/aminoacid/aa20.cpp b/test/snippet/alphabet/aminoacid/aa20.cpp index 9e6bfda2d1..bd536d165c 100644 --- a/test/snippet/alphabet/aminoacid/aa20.cpp +++ b/test/snippet/alphabet/aminoacid/aa20.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/aminoacid/aa20.err.license b/test/snippet/alphabet/aminoacid/aa20.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/aminoacid/aa20.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/aminoacid/aa20_char_literal.cpp b/test/snippet/alphabet/aminoacid/aa20_char_literal.cpp index 3d182d2096..dfe803e671 100644 --- a/test/snippet/alphabet/aminoacid/aa20_char_literal.cpp +++ b/test/snippet/alphabet/aminoacid/aa20_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/aminoacid/aa20_literal.cpp b/test/snippet/alphabet/aminoacid/aa20_literal.cpp index cf9a77ba55..b9065e7cab 100644 --- a/test/snippet/alphabet/aminoacid/aa20_literal.cpp +++ b/test/snippet/alphabet/aminoacid/aa20_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/aminoacid/aa27.cpp b/test/snippet/alphabet/aminoacid/aa27.cpp index b050d36a02..c343b3f700 100644 --- a/test/snippet/alphabet/aminoacid/aa27.cpp +++ b/test/snippet/alphabet/aminoacid/aa27.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/aminoacid/aa27.err.license b/test/snippet/alphabet/aminoacid/aa27.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/aminoacid/aa27.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/aminoacid/aa27_char_literal.cpp b/test/snippet/alphabet/aminoacid/aa27_char_literal.cpp index 85cd374467..2a7a751ade 100644 --- a/test/snippet/alphabet/aminoacid/aa27_char_literal.cpp +++ b/test/snippet/alphabet/aminoacid/aa27_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/aminoacid/aa27_literal.cpp b/test/snippet/alphabet/aminoacid/aa27_literal.cpp index b52c1a9f28..3ff1f0d097 100644 --- a/test/snippet/alphabet/aminoacid/aa27_literal.cpp +++ b/test/snippet/alphabet/aminoacid/aa27_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/aminoacid/enable_aminoacid.cpp b/test/snippet/alphabet/aminoacid/enable_aminoacid.cpp index 39db934038..5b4366a51e 100644 --- a/test/snippet/alphabet/aminoacid/enable_aminoacid.cpp +++ b/test/snippet/alphabet/aminoacid/enable_aminoacid.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include namespace your_namespace diff --git a/test/snippet/alphabet/assign_char_strictly_to.cpp b/test/snippet/alphabet/assign_char_strictly_to.cpp index 7e7e24a8a7..00613cbca3 100644 --- a/test/snippet/alphabet/assign_char_strictly_to.cpp +++ b/test/snippet/alphabet/assign_char_strictly_to.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/assign_char_to.cpp b/test/snippet/alphabet/assign_char_to.cpp index 43e0866ff3..55f432745b 100644 --- a/test/snippet/alphabet/assign_char_to.cpp +++ b/test/snippet/alphabet/assign_char_to.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/assign_rank_to.cpp b/test/snippet/alphabet/assign_rank_to.cpp index 3988d82125..f7e07ae5bd 100644 --- a/test/snippet/alphabet/assign_rank_to.cpp +++ b/test/snippet/alphabet/assign_rank_to.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/char_is_valid_for.cpp b/test/snippet/alphabet/char_is_valid_for.cpp index 3a4117721e..07a4ae671e 100644 --- a/test/snippet/alphabet/char_is_valid_for.cpp +++ b/test/snippet/alphabet/char_is_valid_for.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/char_is_valid_for.out.license b/test/snippet/alphabet/char_is_valid_for.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/char_is_valid_for.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/cigar/cigar.cpp b/test/snippet/alphabet/cigar/cigar.cpp index a59f972fce..bbdffae554 100644 --- a/test/snippet/alphabet/cigar/cigar.cpp +++ b/test/snippet/alphabet/cigar/cigar.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/cigar/cigar.err.license b/test/snippet/alphabet/cigar/cigar.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/cigar/cigar.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/cigar/cigar_assign_string.cpp b/test/snippet/alphabet/cigar/cigar_assign_string.cpp index f2ffcb4392..dbdf916025 100644 --- a/test/snippet/alphabet/cigar/cigar_assign_string.cpp +++ b/test/snippet/alphabet/cigar/cigar_assign_string.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/cigar/cigar_assign_string.err.license b/test/snippet/alphabet/cigar/cigar_assign_string.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/cigar/cigar_assign_string.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/cigar/cigar_get_index.cpp b/test/snippet/alphabet/cigar/cigar_get_index.cpp index 2150b0f318..0f12b42849 100644 --- a/test/snippet/alphabet/cigar/cigar_get_index.cpp +++ b/test/snippet/alphabet/cigar/cigar_get_index.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/cigar/cigar_get_index.err.license b/test/snippet/alphabet/cigar/cigar_get_index.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/cigar/cigar_get_index.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/cigar/cigar_get_type.cpp b/test/snippet/alphabet/cigar/cigar_get_type.cpp index 77cb5c6ac6..76222eae07 100644 --- a/test/snippet/alphabet/cigar/cigar_get_type.cpp +++ b/test/snippet/alphabet/cigar/cigar_get_type.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/cigar/cigar_get_type.err.license b/test/snippet/alphabet/cigar/cigar_get_type.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/cigar/cigar_get_type.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/cigar/cigar_operation.cpp b/test/snippet/alphabet/cigar/cigar_operation.cpp index 085e89a74b..a263251ece 100644 --- a/test/snippet/alphabet/cigar/cigar_operation.cpp +++ b/test/snippet/alphabet/cigar/cigar_operation.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/cigar/cigar_operation.err.license b/test/snippet/alphabet/cigar/cigar_operation.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/cigar/cigar_operation.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/cigar/cigar_operation_char_literal.cpp b/test/snippet/alphabet/cigar/cigar_operation_char_literal.cpp index a54fe05d7f..559f5399d7 100644 --- a/test/snippet/alphabet/cigar/cigar_operation_char_literal.cpp +++ b/test/snippet/alphabet/cigar/cigar_operation_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/cigar/cigar_value_assignment.cpp b/test/snippet/alphabet/cigar/cigar_value_assignment.cpp index d61a1601fc..a1fc1762b7 100644 --- a/test/snippet/alphabet/cigar/cigar_value_assignment.cpp +++ b/test/snippet/alphabet/cigar/cigar_value_assignment.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/cigar/cigar_value_assignment.err.license b/test/snippet/alphabet/cigar/cigar_value_assignment.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/cigar/cigar_value_assignment.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/cigar/cigar_value_construction.cpp b/test/snippet/alphabet/cigar/cigar_value_construction.cpp index ad91a3101e..875a157dad 100644 --- a/test/snippet/alphabet/cigar/cigar_value_construction.cpp +++ b/test/snippet/alphabet/cigar/cigar_value_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/cigar/cigar_value_construction.err.license b/test/snippet/alphabet/cigar/cigar_value_construction.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/cigar/cigar_value_construction.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_assignment.cpp b/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_assignment.cpp index 7b798eb321..98e40227d6 100644 --- a/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_assignment.cpp +++ b/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_assignment.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_construction.cpp b/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_construction.cpp index 8caf9c0217..1f895c9119 100644 --- a/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_construction.cpp +++ b/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_construction.err.license b/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_construction.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_construction.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/composite/alphabet_tuple_base_value_assignment.cpp b/test/snippet/alphabet/composite/alphabet_tuple_base_value_assignment.cpp index a8369f29fd..13dd312fc1 100644 --- a/test/snippet/alphabet/composite/alphabet_tuple_base_value_assignment.cpp +++ b/test/snippet/alphabet/composite/alphabet_tuple_base_value_assignment.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/alphabet_tuple_base_value_construction.cpp b/test/snippet/alphabet/composite/alphabet_tuple_base_value_construction.cpp index 6ce722b709..f412e90e7a 100644 --- a/test/snippet/alphabet/composite/alphabet_tuple_base_value_construction.cpp +++ b/test/snippet/alphabet/composite/alphabet_tuple_base_value_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/alphabet_variant.cpp b/test/snippet/alphabet/composite/alphabet_variant.cpp index 4e49861199..a97a10729b 100644 --- a/test/snippet/alphabet/composite/alphabet_variant.cpp +++ b/test/snippet/alphabet/composite/alphabet_variant.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/alphabet_variant_char_representation.cpp b/test/snippet/alphabet/composite/alphabet_variant_char_representation.cpp index 57963849cb..e483c53ee0 100644 --- a/test/snippet/alphabet/composite/alphabet_variant_char_representation.cpp +++ b/test/snippet/alphabet/composite/alphabet_variant_char_representation.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/composite/alphabet_variant_conversion.cpp b/test/snippet/alphabet/composite/alphabet_variant_conversion.cpp index 27f9d59009..4f17c00cf1 100644 --- a/test/snippet/alphabet/composite/alphabet_variant_conversion.cpp +++ b/test/snippet/alphabet/composite/alphabet_variant_conversion.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/alphabet_variant_conversion_explicit.cpp b/test/snippet/alphabet/composite/alphabet_variant_conversion_explicit.cpp index d098c05c53..b0b9f75026 100644 --- a/test/snippet/alphabet/composite/alphabet_variant_conversion_explicit.cpp +++ b/test/snippet/alphabet/composite/alphabet_variant_conversion_explicit.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/alphabet_variant_is_alternative.cpp b/test/snippet/alphabet/composite/alphabet_variant_is_alternative.cpp index 684485b565..067f25fcaa 100644 --- a/test/snippet/alphabet/composite/alphabet_variant_is_alternative.cpp +++ b/test/snippet/alphabet/composite/alphabet_variant_is_alternative.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/composite/alphabet_variant_subtype_construction.cpp b/test/snippet/alphabet/composite/alphabet_variant_subtype_construction.cpp index 3a8a90b3f7..224f13f3a3 100644 --- a/test/snippet/alphabet/composite/alphabet_variant_subtype_construction.cpp +++ b/test/snippet/alphabet/composite/alphabet_variant_subtype_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/alphabet_variant_value_construction.cpp b/test/snippet/alphabet/composite/alphabet_variant_value_construction.cpp index bec0070dfe..92551d2f5a 100644 --- a/test/snippet/alphabet/composite/alphabet_variant_value_construction.cpp +++ b/test/snippet/alphabet/composite/alphabet_variant_value_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/composite/semialphabet_any.cpp b/test/snippet/alphabet/composite/semialphabet_any.cpp index 076cd33107..78d58dda52 100644 --- a/test/snippet/alphabet/composite/semialphabet_any.cpp +++ b/test/snippet/alphabet/composite/semialphabet_any.cpp @@ -1,8 +1,12 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // This example illustrates how we can reduce the usage of templates (or the amount of different instantiations) via // type erasure. Having only one function generated for `algorithm()` is the only benefit of using `semialphabet_any` // here. Of course this only makes sense for your application if the part of the program that is agnostic of the // character representation (your equivalent of `algorithm()`) is substantially larger than the specific parts – and -// if compile-time and/or size of the exectuble are a concern. +// if compile-time and/or size of the executable are a concern. #include @@ -29,7 +33,7 @@ void algorithm(std::vector> & r, bool is_murphy) if (seqan3::to_rank(v) == 0) seqan3::assign_rank_to(1, v); - // Here we reify the type for printing + // Here we verify the type for printing if (is_murphy) print(r | std::views::transform( diff --git a/test/snippet/alphabet/composite/semialphabet_any.err.license b/test/snippet/alphabet/composite/semialphabet_any.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/composite/semialphabet_any.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/container/bitpacked_sequence.cpp b/test/snippet/alphabet/container/bitpacked_sequence.cpp index 6863a3e102..ee6f89ea39 100644 --- a/test/snippet/alphabet/container/bitpacked_sequence.cpp +++ b/test/snippet/alphabet/container/bitpacked_sequence.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/container/concatenated_sequences.cpp b/test/snippet/alphabet/container/concatenated_sequences.cpp index 1474128f47..9ff0af6a48 100644 --- a/test/snippet/alphabet/container/concatenated_sequences.cpp +++ b/test/snippet/alphabet/container/concatenated_sequences.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/container/concatenated_sequences.err.license b/test/snippet/alphabet/container/concatenated_sequences.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/container/concatenated_sequences.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/container/concatenated_sequences_insert.cpp b/test/snippet/alphabet/container/concatenated_sequences_insert.cpp index 4094ae15ee..83c65f683b 100644 --- a/test/snippet/alphabet/container/concatenated_sequences_insert.cpp +++ b/test/snippet/alphabet/container/concatenated_sequences_insert.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/container/concatenated_sequences_insert.err.license b/test/snippet/alphabet/container/concatenated_sequences_insert.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/container/concatenated_sequences_insert.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/container/concatenated_sequences_insert2.cpp b/test/snippet/alphabet/container/concatenated_sequences_insert2.cpp index 03c336f792..3e5914526b 100644 --- a/test/snippet/alphabet/container/concatenated_sequences_insert2.cpp +++ b/test/snippet/alphabet/container/concatenated_sequences_insert2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/container/concatenated_sequences_insert2.err.license b/test/snippet/alphabet/container/concatenated_sequences_insert2.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/container/concatenated_sequences_insert2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/gap/gap.cpp b/test/snippet/alphabet/gap/gap.cpp index 883b554797..f706d848ca 100644 --- a/test/snippet/alphabet/gap/gap.cpp +++ b/test/snippet/alphabet/gap/gap.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/gap/gap.err.license b/test/snippet/alphabet/gap/gap.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/gap/gap.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/gap/gapped.cpp b/test/snippet/alphabet/gap/gapped.cpp index 504f7e99bf..ae880fab39 100644 --- a/test/snippet/alphabet/gap/gapped.cpp +++ b/test/snippet/alphabet/gap/gapped.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/mask/mask.cpp b/test/snippet/alphabet/mask/mask.cpp index 2cde2b5d01..3881c34a3b 100644 --- a/test/snippet/alphabet/mask/mask.cpp +++ b/test/snippet/alphabet/mask/mask.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/mask/mask.err.license b/test/snippet/alphabet/mask/mask.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/mask/mask.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/mask/masked.cpp b/test/snippet/alphabet/mask/masked.cpp index ab3e86e6a8..212335376d 100644 --- a/test/snippet/alphabet/mask/masked.cpp +++ b/test/snippet/alphabet/mask/masked.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in b/test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in index 96d20b4d4d..44978789d7 100644 --- a/test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in +++ b/test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from ${source_snippet} //![main] diff --git a/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in b/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in index 61a4c69679..7f43f454ce 100644 --- a/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in +++ b/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from ${source_snippet} //![main] diff --git a/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in b/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in index 92fd6cac48..fbce47b7dc 100644 --- a/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in +++ b/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from ${source_snippet} //![main] diff --git a/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in b/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in index 56cadf14c5..f894322389 100644 --- a/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in +++ b/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from ${source_snippet} //![main] diff --git a/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in b/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in index ac7a9e6387..36cc5c549d 100644 --- a/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in +++ b/test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from ${source_snippet} //![main] diff --git a/test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in b/test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in index dc4723f7de..235a0c7777 100644 --- a/test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in +++ b/test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from ${source_snippet} //![main] diff --git a/test/snippet/alphabet/nucleotide/complement_cpo.cpp b/test/snippet/alphabet/nucleotide/complement_cpo.cpp index 665404f0f6..45f73fda8a 100644 --- a/test/snippet/alphabet/nucleotide/complement_cpo.cpp +++ b/test/snippet/alphabet/nucleotide/complement_cpo.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/nucleotide/dna15.cpp b/test/snippet/alphabet/nucleotide/dna15.cpp index 5a0e6d4fd6..62628ff79c 100644 --- a/test/snippet/alphabet/nucleotide/dna15.cpp +++ b/test/snippet/alphabet/nucleotide/dna15.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/nucleotide/dna15.err.license b/test/snippet/alphabet/nucleotide/dna15.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/nucleotide/dna15.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/nucleotide/dna15_char_literal.cpp b/test/snippet/alphabet/nucleotide/dna15_char_literal.cpp index 83f86bda20..0f321af2b0 100644 --- a/test/snippet/alphabet/nucleotide/dna15_char_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna15_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15.cpp b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15.cpp index c27b498941..0796412cd5 100644 --- a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15.cpp +++ b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_inherit.cpp b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_inherit.cpp index 342358e629..670fe4a9bf 100644 --- a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_inherit.cpp +++ b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_inherit.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_vector.cpp b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_vector.cpp index 8ee8e8ed7c..0376d45ab6 100644 --- a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_vector.cpp +++ b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_vector.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_views.cpp b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_views.cpp index 82f371c36c..1acb88063a 100644 --- a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_views.cpp +++ b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_views.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna15_literal.cpp b/test/snippet/alphabet/nucleotide/dna15_literal.cpp index 73f4d4039d..7dd62219ce 100644 --- a/test/snippet/alphabet/nucleotide/dna15_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna15_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna16sam.cpp b/test/snippet/alphabet/nucleotide/dna16sam.cpp index f26249d9af..94627da0a2 100644 --- a/test/snippet/alphabet/nucleotide/dna16sam.cpp +++ b/test/snippet/alphabet/nucleotide/dna16sam.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/nucleotide/dna16sam.err.license b/test/snippet/alphabet/nucleotide/dna16sam.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/nucleotide/dna16sam.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/nucleotide/dna16sam_char_literal.cpp b/test/snippet/alphabet/nucleotide/dna16sam_char_literal.cpp index 432cd1bea1..40c06ee4ff 100644 --- a/test/snippet/alphabet/nucleotide/dna16sam_char_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna16sam_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna16sam_literal.cpp b/test/snippet/alphabet/nucleotide/dna16sam_literal.cpp index 011734712a..a97288650b 100644 --- a/test/snippet/alphabet/nucleotide/dna16sam_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna16sam_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna3bs.cpp b/test/snippet/alphabet/nucleotide/dna3bs.cpp index 4e999fd0e5..14242a249c 100644 --- a/test/snippet/alphabet/nucleotide/dna3bs.cpp +++ b/test/snippet/alphabet/nucleotide/dna3bs.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/nucleotide/dna3bs.err.license b/test/snippet/alphabet/nucleotide/dna3bs.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/nucleotide/dna3bs.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/nucleotide/dna3bs_char_literal.cpp b/test/snippet/alphabet/nucleotide/dna3bs_char_literal.cpp index 59de8b9724..c9a4253d11 100644 --- a/test/snippet/alphabet/nucleotide/dna3bs_char_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna3bs_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna3bs_literal.cpp b/test/snippet/alphabet/nucleotide/dna3bs_literal.cpp index efc43e769f..8646280e9b 100644 --- a/test/snippet/alphabet/nucleotide/dna3bs_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna3bs_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna4.cpp b/test/snippet/alphabet/nucleotide/dna4.cpp index 654b76fa44..3beae7c618 100644 --- a/test/snippet/alphabet/nucleotide/dna4.cpp +++ b/test/snippet/alphabet/nucleotide/dna4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/nucleotide/dna4.err.license b/test/snippet/alphabet/nucleotide/dna4.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/nucleotide/dna4.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/nucleotide/dna4_char_literal.cpp b/test/snippet/alphabet/nucleotide/dna4_char_literal.cpp index 40b5c88bac..30a13186ed 100644 --- a/test/snippet/alphabet/nucleotide/dna4_char_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna4_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4.cpp b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4.cpp index 3af19ed814..1caed54c4a 100644 --- a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4.cpp +++ b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_inherit.cpp b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_inherit.cpp index b2bc4af6f0..2ab3a87a8f 100644 --- a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_inherit.cpp +++ b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_inherit.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_vector.cpp b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_vector.cpp index 6213ffb433..e2bf03fd29 100644 --- a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_vector.cpp +++ b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_vector.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_views.cpp b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_views.cpp index c6c4a8eb95..2d3d8fdbdb 100644 --- a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_views.cpp +++ b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_views.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna4_literal.cpp b/test/snippet/alphabet/nucleotide/dna4_literal.cpp index c7c5a9c85b..8899902de5 100644 --- a/test/snippet/alphabet/nucleotide/dna4_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna4_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna5.cpp b/test/snippet/alphabet/nucleotide/dna5.cpp index e245a3918e..2f5d4e9841 100644 --- a/test/snippet/alphabet/nucleotide/dna5.cpp +++ b/test/snippet/alphabet/nucleotide/dna5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/nucleotide/dna5.err.license b/test/snippet/alphabet/nucleotide/dna5.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/nucleotide/dna5.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/nucleotide/dna5_char_literal.cpp b/test/snippet/alphabet/nucleotide/dna5_char_literal.cpp index 007be04761..38386288cf 100644 --- a/test/snippet/alphabet/nucleotide/dna5_char_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna5_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5.cpp b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5.cpp index e999275a18..863cdf9097 100644 --- a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5.cpp +++ b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_inherit.cpp b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_inherit.cpp index 6c5f3c68aa..c4f093b3f3 100644 --- a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_inherit.cpp +++ b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_inherit.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_vector.cpp b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_vector.cpp index 15462245c4..1db22731f9 100644 --- a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_vector.cpp +++ b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_vector.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_views.cpp b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_views.cpp index 031ee5f598..cca242e783 100644 --- a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_views.cpp +++ b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_views.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/dna5_literal.cpp b/test/snippet/alphabet/nucleotide/dna5_literal.cpp index f726c846b8..c784260f66 100644 --- a/test/snippet/alphabet/nucleotide/dna5_literal.cpp +++ b/test/snippet/alphabet/nucleotide/dna5_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna15.cpp b/test/snippet/alphabet/nucleotide/rna15.cpp index ceb4f49ae2..0febe5c652 100644 --- a/test/snippet/alphabet/nucleotide/rna15.cpp +++ b/test/snippet/alphabet/nucleotide/rna15.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/nucleotide/rna15.err.license b/test/snippet/alphabet/nucleotide/rna15.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/nucleotide/rna15.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/nucleotide/rna15_char_literal.cpp b/test/snippet/alphabet/nucleotide/rna15_char_literal.cpp index 62362ad47a..8ebd507005 100644 --- a/test/snippet/alphabet/nucleotide/rna15_char_literal.cpp +++ b/test/snippet/alphabet/nucleotide/rna15_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15.cpp b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15.cpp index cb4c9f901a..8d93151edf 100644 --- a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15.cpp +++ b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_inherit.cpp b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_inherit.cpp index 608c695b91..3ccac61d97 100644 --- a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_inherit.cpp +++ b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_inherit.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_vector.cpp b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_vector.cpp index bd88f87ee9..8f78a52f53 100644 --- a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_vector.cpp +++ b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_vector.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_views.cpp b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_views.cpp index 750d068a2a..0ccbbc078e 100644 --- a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_views.cpp +++ b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_views.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna15_literal.cpp b/test/snippet/alphabet/nucleotide/rna15_literal.cpp index dc1a310ad9..74fbe08f61 100644 --- a/test/snippet/alphabet/nucleotide/rna15_literal.cpp +++ b/test/snippet/alphabet/nucleotide/rna15_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna4.cpp b/test/snippet/alphabet/nucleotide/rna4.cpp index 0dd707f6b9..0bdeeae493 100644 --- a/test/snippet/alphabet/nucleotide/rna4.cpp +++ b/test/snippet/alphabet/nucleotide/rna4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/nucleotide/rna4.err.license b/test/snippet/alphabet/nucleotide/rna4.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/nucleotide/rna4.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/nucleotide/rna4_char_literal.cpp b/test/snippet/alphabet/nucleotide/rna4_char_literal.cpp index 639243bd79..c2da247485 100644 --- a/test/snippet/alphabet/nucleotide/rna4_char_literal.cpp +++ b/test/snippet/alphabet/nucleotide/rna4_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4.cpp b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4.cpp index 0341c46653..ebe327d1c9 100644 --- a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4.cpp +++ b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_inherit.cpp b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_inherit.cpp index 10575d152d..5cdc8962d7 100644 --- a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_inherit.cpp +++ b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_inherit.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_vector.cpp b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_vector.cpp index d78da0abf1..088e4e5581 100644 --- a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_vector.cpp +++ b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_vector.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_views.cpp b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_views.cpp index 14c0993597..f9428a9c0e 100644 --- a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_views.cpp +++ b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_views.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna4_literal.cpp b/test/snippet/alphabet/nucleotide/rna4_literal.cpp index 43eb034a62..64f164bea9 100644 --- a/test/snippet/alphabet/nucleotide/rna4_literal.cpp +++ b/test/snippet/alphabet/nucleotide/rna4_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna5.cpp b/test/snippet/alphabet/nucleotide/rna5.cpp index d90e23b01e..c760a83146 100644 --- a/test/snippet/alphabet/nucleotide/rna5.cpp +++ b/test/snippet/alphabet/nucleotide/rna5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include int main() diff --git a/test/snippet/alphabet/nucleotide/rna5.err.license b/test/snippet/alphabet/nucleotide/rna5.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/nucleotide/rna5.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/nucleotide/rna5_char_literal.cpp b/test/snippet/alphabet/nucleotide/rna5_char_literal.cpp index 001b5b379a..df7c7eb547 100644 --- a/test/snippet/alphabet/nucleotide/rna5_char_literal.cpp +++ b/test/snippet/alphabet/nucleotide/rna5_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5.cpp b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5.cpp index 69866f4944..a70fdfaf68 100644 --- a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5.cpp +++ b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_inherit.cpp b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_inherit.cpp index bead15333b..b96de8b9f5 100644 --- a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_inherit.cpp +++ b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_inherit.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_vector.cpp b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_vector.cpp index b27b70b0e0..2825d5d2a5 100644 --- a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_vector.cpp +++ b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_vector.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_vector.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_views.cpp b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_views.cpp index 61ab3830c7..e66c5acae1 100644 --- a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_views.cpp +++ b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_views.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_views.cpp.in //![main] diff --git a/test/snippet/alphabet/nucleotide/rna5_literal.cpp b/test/snippet/alphabet/nucleotide/rna5_literal.cpp index e9930d95d0..b67e49a0e4 100644 --- a/test/snippet/alphabet/nucleotide/rna5_literal.cpp +++ b/test/snippet/alphabet/nucleotide/rna5_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + // generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in //![main] diff --git a/test/snippet/alphabet/quality/phred42.cpp b/test/snippet/alphabet/quality/phred42.cpp index 33800e160d..5d1fd19b71 100644 --- a/test/snippet/alphabet/quality/phred42.cpp +++ b/test/snippet/alphabet/quality/phred42.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/quality/phred42.err.license b/test/snippet/alphabet/quality/phred42.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/quality/phred42.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/quality/phred42_char_literal.cpp b/test/snippet/alphabet/quality/phred42_char_literal.cpp index c8a77685e3..d2c85c10a1 100644 --- a/test/snippet/alphabet/quality/phred42_char_literal.cpp +++ b/test/snippet/alphabet/quality/phred42_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/quality/phred42_literal.cpp b/test/snippet/alphabet/quality/phred42_literal.cpp index b38c075e15..bce898b84c 100644 --- a/test/snippet/alphabet/quality/phred42_literal.cpp +++ b/test/snippet/alphabet/quality/phred42_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/quality/phred63.cpp b/test/snippet/alphabet/quality/phred63.cpp index 9987008581..4fb396a95b 100644 --- a/test/snippet/alphabet/quality/phred63.cpp +++ b/test/snippet/alphabet/quality/phred63.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/quality/phred63.err.license b/test/snippet/alphabet/quality/phred63.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/quality/phred63.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/quality/phred63_char_literal.cpp b/test/snippet/alphabet/quality/phred63_char_literal.cpp index 9c811d4ddd..37b86fa4c4 100644 --- a/test/snippet/alphabet/quality/phred63_char_literal.cpp +++ b/test/snippet/alphabet/quality/phred63_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/quality/phred63_literal.cpp b/test/snippet/alphabet/quality/phred63_literal.cpp index 89b39940e9..887a49fd8f 100644 --- a/test/snippet/alphabet/quality/phred63_literal.cpp +++ b/test/snippet/alphabet/quality/phred63_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/quality/phred68solexa.cpp b/test/snippet/alphabet/quality/phred68solexa.cpp index 72d8917c00..ec10c9c849 100644 --- a/test/snippet/alphabet/quality/phred68solexa.cpp +++ b/test/snippet/alphabet/quality/phred68solexa.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/quality/phred68solexa.err.license b/test/snippet/alphabet/quality/phred68solexa.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/quality/phred68solexa.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/quality/phred68solexa_char_literal.cpp b/test/snippet/alphabet/quality/phred68solexa_char_literal.cpp index 283186068d..a3e385867e 100644 --- a/test/snippet/alphabet/quality/phred68solexa_char_literal.cpp +++ b/test/snippet/alphabet/quality/phred68solexa_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/quality/phred68solexa_literal.cpp b/test/snippet/alphabet/quality/phred68solexa_literal.cpp index c258cbbcb0..acfe5f2ddd 100644 --- a/test/snippet/alphabet/quality/phred68solexa_literal.cpp +++ b/test/snippet/alphabet/quality/phred68solexa_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/quality/phred94.cpp b/test/snippet/alphabet/quality/phred94.cpp index 5207418d35..174ab166c2 100644 --- a/test/snippet/alphabet/quality/phred94.cpp +++ b/test/snippet/alphabet/quality/phred94.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/quality/phred94.err.license b/test/snippet/alphabet/quality/phred94.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/quality/phred94.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/quality/phred94_char_literal.cpp b/test/snippet/alphabet/quality/phred94_char_literal.cpp index cd774f2164..4cfb28b534 100644 --- a/test/snippet/alphabet/quality/phred94_char_literal.cpp +++ b/test/snippet/alphabet/quality/phred94_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/quality/phred94_literal.cpp b/test/snippet/alphabet/quality/phred94_literal.cpp index 3f1f11c4a3..65d297343a 100644 --- a/test/snippet/alphabet/quality/phred94_literal.cpp +++ b/test/snippet/alphabet/quality/phred94_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/quality/qualified.cpp b/test/snippet/alphabet/quality/qualified.cpp index e9159c6bea..cca133ccbd 100644 --- a/test/snippet/alphabet/quality/qualified.cpp +++ b/test/snippet/alphabet/quality/qualified.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/quality/qualified.err.license b/test/snippet/alphabet/quality/qualified.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/quality/qualified.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/dot_bracket3.cpp b/test/snippet/alphabet/structure/dot_bracket3.cpp index 8891bc3a1d..40aa5f24e3 100644 --- a/test/snippet/alphabet/structure/dot_bracket3.cpp +++ b/test/snippet/alphabet/structure/dot_bracket3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/structure/dot_bracket3.err.license b/test/snippet/alphabet/structure/dot_bracket3.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/dot_bracket3.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/dot_bracket3_char_literal.cpp b/test/snippet/alphabet/structure/dot_bracket3_char_literal.cpp index 40bb8f02e4..0cc97fa2b4 100644 --- a/test/snippet/alphabet/structure/dot_bracket3_char_literal.cpp +++ b/test/snippet/alphabet/structure/dot_bracket3_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/structure/dot_bracket3_literal.cpp b/test/snippet/alphabet/structure/dot_bracket3_literal.cpp index a5baf16f9c..9ff3baf2d5 100644 --- a/test/snippet/alphabet/structure/dot_bracket3_literal.cpp +++ b/test/snippet/alphabet/structure/dot_bracket3_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/structure/dssp9.cpp b/test/snippet/alphabet/structure/dssp9.cpp index 319e7cc3dd..b24e8c0a9c 100644 --- a/test/snippet/alphabet/structure/dssp9.cpp +++ b/test/snippet/alphabet/structure/dssp9.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/structure/dssp9.err.license b/test/snippet/alphabet/structure/dssp9.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/dssp9.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/dssp9_char_literal.cpp b/test/snippet/alphabet/structure/dssp9_char_literal.cpp index 648c98bc4f..d299575b51 100644 --- a/test/snippet/alphabet/structure/dssp9_char_literal.cpp +++ b/test/snippet/alphabet/structure/dssp9_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/structure/dssp9_literal.cpp b/test/snippet/alphabet/structure/dssp9_literal.cpp index a9143d31f9..602ddae17c 100644 --- a/test/snippet/alphabet/structure/dssp9_literal.cpp +++ b/test/snippet/alphabet/structure/dssp9_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/structure/structured_aa.cpp b/test/snippet/alphabet/structure/structured_aa.cpp index dec5d1bc80..115060b17c 100644 --- a/test/snippet/alphabet/structure/structured_aa.cpp +++ b/test/snippet/alphabet/structure/structured_aa.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/structure/structured_aa.err.license b/test/snippet/alphabet/structure/structured_aa.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/structured_aa.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/structured_rna.cpp b/test/snippet/alphabet/structure/structured_rna.cpp index b3ac51953f..9fdf780589 100644 --- a/test/snippet/alphabet/structure/structured_rna.cpp +++ b/test/snippet/alphabet/structure/structured_rna.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/structure/structured_rna.err.license b/test/snippet/alphabet/structure/structured_rna.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/structured_rna.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/wuss.cpp b/test/snippet/alphabet/structure/wuss.cpp index 50e4c7bf45..ad6e24ead0 100644 --- a/test/snippet/alphabet/structure/wuss.cpp +++ b/test/snippet/alphabet/structure/wuss.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/structure/wuss.err.license b/test/snippet/alphabet/structure/wuss.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/wuss.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/wuss_char_literal.cpp b/test/snippet/alphabet/structure/wuss_char_literal.cpp index a9b51c5f27..11a84dd099 100644 --- a/test/snippet/alphabet/structure/wuss_char_literal.cpp +++ b/test/snippet/alphabet/structure/wuss_char_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/structure/wuss_is_pair_close.cpp b/test/snippet/alphabet/structure/wuss_is_pair_close.cpp index 3762f292a9..f5057bd0d1 100644 --- a/test/snippet/alphabet/structure/wuss_is_pair_close.cpp +++ b/test/snippet/alphabet/structure/wuss_is_pair_close.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/structure/wuss_is_pair_close.out.license b/test/snippet/alphabet/structure/wuss_is_pair_close.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/wuss_is_pair_close.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/wuss_is_pair_open.cpp b/test/snippet/alphabet/structure/wuss_is_pair_open.cpp index 019e5bf16d..5942f36d1e 100644 --- a/test/snippet/alphabet/structure/wuss_is_pair_open.cpp +++ b/test/snippet/alphabet/structure/wuss_is_pair_open.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/structure/wuss_is_pair_open.out.license b/test/snippet/alphabet/structure/wuss_is_pair_open.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/wuss_is_pair_open.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/wuss_is_unpaired.cpp b/test/snippet/alphabet/structure/wuss_is_unpaired.cpp index a078f3a2c9..0b9e0a4cb0 100644 --- a/test/snippet/alphabet/structure/wuss_is_unpaired.cpp +++ b/test/snippet/alphabet/structure/wuss_is_unpaired.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/structure/wuss_is_unpaired.out.license b/test/snippet/alphabet/structure/wuss_is_unpaired.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/wuss_is_unpaired.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/wuss_literal.cpp b/test/snippet/alphabet/structure/wuss_literal.cpp index f9b6caf172..5c0b9639bd 100644 --- a/test/snippet/alphabet/structure/wuss_literal.cpp +++ b/test/snippet/alphabet/structure/wuss_literal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/alphabet/structure/wuss_max_pseudoknot_depth.cpp b/test/snippet/alphabet/structure/wuss_max_pseudoknot_depth.cpp index 9aea13adf1..9658cbf525 100644 --- a/test/snippet/alphabet/structure/wuss_max_pseudoknot_depth.cpp +++ b/test/snippet/alphabet/structure/wuss_max_pseudoknot_depth.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/structure/wuss_max_pseudoknot_depth.out.license b/test/snippet/alphabet/structure/wuss_max_pseudoknot_depth.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/wuss_max_pseudoknot_depth.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/structure/wuss_pseudoknot_id.cpp b/test/snippet/alphabet/structure/wuss_pseudoknot_id.cpp index 416ddfd207..cd2d52c4ff 100644 --- a/test/snippet/alphabet/structure/wuss_pseudoknot_id.cpp +++ b/test/snippet/alphabet/structure/wuss_pseudoknot_id.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/structure/wuss_pseudoknot_id.err.license b/test/snippet/alphabet/structure/wuss_pseudoknot_id.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/structure/wuss_pseudoknot_id.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/char_strictly_to.cpp b/test/snippet/alphabet/views/char_strictly_to.cpp index 310faaf50e..4540724408 100644 --- a/test/snippet/alphabet/views/char_strictly_to.cpp +++ b/test/snippet/alphabet/views/char_strictly_to.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/views/char_strictly_to.err.license b/test/snippet/alphabet/views/char_strictly_to.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/char_strictly_to.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/char_to.cpp b/test/snippet/alphabet/views/char_to.cpp index bf0d437442..1f922c7fcc 100644 --- a/test/snippet/alphabet/views/char_to.cpp +++ b/test/snippet/alphabet/views/char_to.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/views/char_to.err.license b/test/snippet/alphabet/views/char_to.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/char_to.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/complement.cpp b/test/snippet/alphabet/views/complement.cpp index 938bc72071..26ca5abe7f 100644 --- a/test/snippet/alphabet/views/complement.cpp +++ b/test/snippet/alphabet/views/complement.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/views/complement.err.license b/test/snippet/alphabet/views/complement.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/complement.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/range_view_to_char.cpp b/test/snippet/alphabet/views/range_view_to_char.cpp index 09a0bed711..b5ed949ef5 100644 --- a/test/snippet/alphabet/views/range_view_to_char.cpp +++ b/test/snippet/alphabet/views/range_view_to_char.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/views/range_view_to_char.err.license b/test/snippet/alphabet/views/range_view_to_char.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/range_view_to_char.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/range_view_to_rank.cpp b/test/snippet/alphabet/views/range_view_to_rank.cpp index cfe5bfbea6..e1bf1fac35 100644 --- a/test/snippet/alphabet/views/range_view_to_rank.cpp +++ b/test/snippet/alphabet/views/range_view_to_rank.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/views/range_view_to_rank.err.license b/test/snippet/alphabet/views/range_view_to_rank.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/range_view_to_rank.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/rank_to.cpp b/test/snippet/alphabet/views/rank_to.cpp index 640ab58744..47c5056b01 100644 --- a/test/snippet/alphabet/views/rank_to.cpp +++ b/test/snippet/alphabet/views/rank_to.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/views/rank_to.err.license b/test/snippet/alphabet/views/rank_to.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/rank_to.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/to_char.cpp b/test/snippet/alphabet/views/to_char.cpp index 79f7dc55f4..c785a23262 100644 --- a/test/snippet/alphabet/views/to_char.cpp +++ b/test/snippet/alphabet/views/to_char.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/views/to_char.out.license b/test/snippet/alphabet/views/to_char.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/to_char.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/to_rank.cpp b/test/snippet/alphabet/views/to_rank.cpp index ee43a73e36..e8df19bae2 100644 --- a/test/snippet/alphabet/views/to_rank.cpp +++ b/test/snippet/alphabet/views/to_rank.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/views/to_rank.out.license b/test/snippet/alphabet/views/to_rank.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/to_rank.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/translate_dna5.cpp b/test/snippet/alphabet/views/translate_dna5.cpp index 3910cb8742..9fc31a5f3d 100644 --- a/test/snippet/alphabet/views/translate_dna5.cpp +++ b/test/snippet/alphabet/views/translate_dna5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/views/translate_dna5.err.license b/test/snippet/alphabet/views/translate_dna5.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/translate_dna5.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/translate_join.cpp b/test/snippet/alphabet/views/translate_join.cpp index 8e659001bb..a878548f2e 100644 --- a/test/snippet/alphabet/views/translate_join.cpp +++ b/test/snippet/alphabet/views/translate_join.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //! [example] #include diff --git a/test/snippet/alphabet/views/translate_join.err.license b/test/snippet/alphabet/views/translate_join.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/translate_join.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/translate_usage.cpp b/test/snippet/alphabet/views/translate_usage.cpp index cfb82d4deb..af590424f9 100644 --- a/test/snippet/alphabet/views/translate_usage.cpp +++ b/test/snippet/alphabet/views/translate_usage.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/views/translate_usage.err.license b/test/snippet/alphabet/views/translate_usage.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/translate_usage.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/trim_quality_dna5q.cpp b/test/snippet/alphabet/views/trim_quality_dna5q.cpp index be9bad4a5c..2db1db1ef6 100644 --- a/test/snippet/alphabet/views/trim_quality_dna5q.cpp +++ b/test/snippet/alphabet/views/trim_quality_dna5q.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/views/trim_quality_dna5q.err.license b/test/snippet/alphabet/views/trim_quality_dna5q.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/trim_quality_dna5q.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/trim_quality_phred42.cpp b/test/snippet/alphabet/views/trim_quality_phred42.cpp index 702578f6e2..caa21c5213 100644 --- a/test/snippet/alphabet/views/trim_quality_phred42.cpp +++ b/test/snippet/alphabet/views/trim_quality_phred42.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/alphabet/views/trim_quality_phred42.err.license b/test/snippet/alphabet/views/trim_quality_phred42.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/trim_quality_phred42.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/alphabet/views/validate_char_for.cpp b/test/snippet/alphabet/views/validate_char_for.cpp index 87b606f20b..daee252d1b 100644 --- a/test/snippet/alphabet/views/validate_char_for.cpp +++ b/test/snippet/alphabet/views/validate_char_for.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/alphabet/views/validate_char_for.err.license b/test/snippet/alphabet/views/validate_char_for.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/alphabet/views/validate_char_for.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/argument_parser_1.cpp b/test/snippet/argument_parser/argument_parser_1.cpp index 02556ab697..2db1597d6b 100644 --- a/test/snippet/argument_parser/argument_parser_1.cpp +++ b/test/snippet/argument_parser/argument_parser_1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/argument_parser_1.out.license b/test/snippet/argument_parser/argument_parser_1.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/argument_parser_1.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/argument_parser_2.cpp b/test/snippet/argument_parser/argument_parser_2.cpp index c10b2af131..cc19693e8c 100644 --- a/test/snippet/argument_parser/argument_parser_2.cpp +++ b/test/snippet/argument_parser/argument_parser_2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/argument_parser_2.out.license b/test/snippet/argument_parser/argument_parser_2.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/argument_parser_2.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/argument_parser_3.cpp b/test/snippet/argument_parser/argument_parser_3.cpp index 2aae30a46b..636f9e85e4 100644 --- a/test/snippet/argument_parser/argument_parser_3.cpp +++ b/test/snippet/argument_parser/argument_parser_3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main(int argc, char ** argv) diff --git a/test/snippet/argument_parser/argument_parser_3.out.license b/test/snippet/argument_parser/argument_parser_3.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/argument_parser_3.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/auxiliary.cpp b/test/snippet/argument_parser/auxiliary.cpp index 30e651629f..6b5f51101b 100644 --- a/test/snippet/argument_parser/auxiliary.cpp +++ b/test/snippet/argument_parser/auxiliary.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main(int argc, char const ** argv) diff --git a/test/snippet/argument_parser/custom_argument_parsing_enumeration.cpp b/test/snippet/argument_parser/custom_argument_parsing_enumeration.cpp index 95343af5aa..a7aa11c416 100644 --- a/test/snippet/argument_parser/custom_argument_parsing_enumeration.cpp +++ b/test/snippet/argument_parser/custom_argument_parsing_enumeration.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/custom_argument_parsing_enumeration.out.license b/test/snippet/argument_parser/custom_argument_parsing_enumeration.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/custom_argument_parsing_enumeration.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/custom_enumeration.cpp b/test/snippet/argument_parser/custom_enumeration.cpp index c845b7932d..82c74e6517 100644 --- a/test/snippet/argument_parser/custom_enumeration.cpp +++ b/test/snippet/argument_parser/custom_enumeration.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include namespace foo diff --git a/test/snippet/argument_parser/custom_enumeration.out.license b/test/snippet/argument_parser/custom_enumeration.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/custom_enumeration.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/is_option_set.cpp b/test/snippet/argument_parser/is_option_set.cpp index f3ca2ea11e..c077cd0c76 100644 --- a/test/snippet/argument_parser/is_option_set.cpp +++ b/test/snippet/argument_parser/is_option_set.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/is_option_set.out.license b/test/snippet/argument_parser/is_option_set.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/is_option_set.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_1.cpp b/test/snippet/argument_parser/validators_1.cpp index fd6e830648..fa8ffd29ec 100644 --- a/test/snippet/argument_parser/validators_1.cpp +++ b/test/snippet/argument_parser/validators_1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_1.out.license b/test/snippet/argument_parser/validators_1.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_1.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_2.cpp b/test/snippet/argument_parser/validators_2.cpp index 87804a806d..4bb9e1c3f8 100644 --- a/test/snippet/argument_parser/validators_2.cpp +++ b/test/snippet/argument_parser/validators_2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_2.out.license b/test/snippet/argument_parser/validators_2.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_2.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_3.cpp b/test/snippet/argument_parser/validators_3.cpp index d885edf1c2..189d09154c 100644 --- a/test/snippet/argument_parser/validators_3.cpp +++ b/test/snippet/argument_parser/validators_3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_3.out.license b/test/snippet/argument_parser/validators_3.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_3.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_4.cpp b/test/snippet/argument_parser/validators_4.cpp index 5bdfaf2a35..72867b6d6a 100644 --- a/test/snippet/argument_parser/validators_4.cpp +++ b/test/snippet/argument_parser/validators_4.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_4.out.license b/test/snippet/argument_parser/validators_4.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_4.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_chaining.cpp b/test/snippet/argument_parser/validators_chaining.cpp index 7ef6503408..8f43b48bbc 100644 --- a/test/snippet/argument_parser/validators_chaining.cpp +++ b/test/snippet/argument_parser/validators_chaining.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_chaining.out.license b/test/snippet/argument_parser/validators_chaining.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_chaining.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_input_directory.cpp b/test/snippet/argument_parser/validators_input_directory.cpp index 2537e03b7b..a0ad9d2b2d 100644 --- a/test/snippet/argument_parser/validators_input_directory.cpp +++ b/test/snippet/argument_parser/validators_input_directory.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_input_directory.out.license b/test/snippet/argument_parser/validators_input_directory.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_input_directory.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_input_file.cpp b/test/snippet/argument_parser/validators_input_file.cpp index b86352ce4f..fcd54facfa 100644 --- a/test/snippet/argument_parser/validators_input_file.cpp +++ b/test/snippet/argument_parser/validators_input_file.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_input_file.out.license b/test/snippet/argument_parser/validators_input_file.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_input_file.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_input_file_ext_from_file.cpp b/test/snippet/argument_parser/validators_input_file_ext_from_file.cpp index 75f7cba326..aa6b8e2633 100644 --- a/test/snippet/argument_parser/validators_input_file_ext_from_file.cpp +++ b/test/snippet/argument_parser/validators_input_file_ext_from_file.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/argument_parser/validators_input_file_ext_from_file.err.license b/test/snippet/argument_parser/validators_input_file_ext_from_file.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_input_file_ext_from_file.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_output_directory.cpp b/test/snippet/argument_parser/validators_output_directory.cpp index fc6cfa6292..3af0becc1b 100644 --- a/test/snippet/argument_parser/validators_output_directory.cpp +++ b/test/snippet/argument_parser/validators_output_directory.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_output_directory.out.license b/test/snippet/argument_parser/validators_output_directory.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_output_directory.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_output_file.cpp b/test/snippet/argument_parser/validators_output_file.cpp index bab124d574..c63347bd9e 100644 --- a/test/snippet/argument_parser/validators_output_file.cpp +++ b/test/snippet/argument_parser/validators_output_file.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/argument_parser/validators_output_file.out.license b/test/snippet/argument_parser/validators_output_file.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_output_file.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/argument_parser/validators_output_file_ext_from_file.cpp b/test/snippet/argument_parser/validators_output_file_ext_from_file.cpp index f6c7efe085..0c5d4e5593 100644 --- a/test/snippet/argument_parser/validators_output_file_ext_from_file.cpp +++ b/test/snippet/argument_parser/validators_output_file_ext_from_file.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/argument_parser/validators_output_file_ext_from_file.err.license b/test/snippet/argument_parser/validators_output_file_ext_from_file.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/argument_parser/validators_output_file_ext_from_file.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/compare_snippet_output.cmake b/test/snippet/compare_snippet_output.cmake index bd953453d2..6569d872cd 100644 --- a/test/snippet/compare_snippet_output.cmake +++ b/test/snippet/compare_snippet_output.cmake @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause + cmake_minimum_required (VERSION 3.10) include ("${CMAKE_CURRENT_LIST_DIR}/../cmake/seqan3_path_longest_stem.cmake") diff --git a/test/snippet/core/add_enum_bitwise_operators.cpp b/test/snippet/core/add_enum_bitwise_operators.cpp index 0224de8726..20dab48cc9 100644 --- a/test/snippet/core/add_enum_bitwise_operators.cpp +++ b/test/snippet/core/add_enum_bitwise_operators.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/add_enum_bitwise_operators.out.license b/test/snippet/core/add_enum_bitwise_operators.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/add_enum_bitwise_operators.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/cereal_example.cpp b/test/snippet/core/cereal_example.cpp index fb7c26e280..cfa798bd75 100644 --- a/test/snippet/core/cereal_example.cpp +++ b/test/snippet/core/cereal_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #if SEQAN3_WITH_CEREAL # include # include diff --git a/test/snippet/core/configuration/configuration_combine.cpp b/test/snippet/core/configuration/configuration_combine.cpp index 5b4f71af3c..03632c0c76 100644 --- a/test/snippet/core/configuration/configuration_combine.cpp +++ b/test/snippet/core/configuration/configuration_combine.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/core/configuration/configuration_compatibility.cpp b/test/snippet/core/configuration/configuration_compatibility.cpp index e114284cfc..bdf78332b7 100644 --- a/test/snippet/core/configuration/configuration_compatibility.cpp +++ b/test/snippet/core/configuration/configuration_compatibility.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include enum struct my_id : int diff --git a/test/snippet/core/configuration/configuration_get.cpp b/test/snippet/core/configuration/configuration_get.cpp index d73c1d80ec..d507170aae 100644 --- a/test/snippet/core/configuration/configuration_get.cpp +++ b/test/snippet/core/configuration/configuration_get.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/core/configuration/configuration_get.err.license b/test/snippet/core/configuration/configuration_get.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/configuration/configuration_get.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/configuration/configuration_get_or.cpp b/test/snippet/core/configuration/configuration_get_or.cpp index 5d32a9fdca..8c15a95a7e 100644 --- a/test/snippet/core/configuration/configuration_get_or.cpp +++ b/test/snippet/core/configuration/configuration_get_or.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/core/configuration/configuration_get_or.err.license b/test/snippet/core/configuration/configuration_get_or.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/configuration/configuration_get_or.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/configuration/configuration_setup.cpp b/test/snippet/core/configuration/configuration_setup.cpp index 0c14d2a5fe..4e1bac8a39 100644 --- a/test/snippet/core/configuration/configuration_setup.cpp +++ b/test/snippet/core/configuration/configuration_setup.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/debug_stream_flags.cpp b/test/snippet/core/debug_stream_flags.cpp index 6e8b967c46..55c20a547d 100644 --- a/test/snippet/core/debug_stream_flags.cpp +++ b/test/snippet/core/debug_stream_flags.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/core/debug_stream_flags.err.license b/test/snippet/core/debug_stream_flags.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/debug_stream_flags.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/debug_stream_set_underlying_stream.cpp b/test/snippet/core/debug_stream_set_underlying_stream.cpp index f8d3427fbf..dfa798cf26 100644 --- a/test/snippet/core/debug_stream_set_underlying_stream.cpp +++ b/test/snippet/core/debug_stream_set_underlying_stream.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/debug_stream_set_underlying_stream2.cpp b/test/snippet/core/debug_stream_set_underlying_stream2.cpp index 6f687936ed..db6aee880c 100644 --- a/test/snippet/core/debug_stream_set_underlying_stream2.cpp +++ b/test/snippet/core/debug_stream_set_underlying_stream2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/debug_stream_set_underlying_stream2.err.license b/test/snippet/core/debug_stream_set_underlying_stream2.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/debug_stream_set_underlying_stream2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/debug_stream_usage.cpp b/test/snippet/core/debug_stream_usage.cpp index 85ec5ffcdf..6fd34ca001 100644 --- a/test/snippet/core/debug_stream_usage.cpp +++ b/test/snippet/core/debug_stream_usage.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/debug_stream_usage.err.license b/test/snippet/core/debug_stream_usage.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/debug_stream_usage.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/debug_stream_usage.out.license b/test/snippet/core/debug_stream_usage.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/debug_stream_usage.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/detail/copyable_wrapper.cpp b/test/snippet/core/detail/copyable_wrapper.cpp index 0f73321f5c..7ff5c03275 100644 --- a/test/snippet/core/detail/copyable_wrapper.cpp +++ b/test/snippet/core/detail/copyable_wrapper.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/detail/copyable_wrapper.err.license b/test/snippet/core/detail/copyable_wrapper.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/detail/copyable_wrapper.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/detail/customisation_point.cpp b/test/snippet/core/detail/customisation_point.cpp index 7b453c24b1..6bfd256dd7 100644 --- a/test/snippet/core/detail/customisation_point.cpp +++ b/test/snippet/core/detail/customisation_point.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/detail/deferred_crtp_base.cpp b/test/snippet/core/detail/deferred_crtp_base.cpp index b10f944408..ebf43337cf 100644 --- a/test/snippet/core/detail/deferred_crtp_base.cpp +++ b/test/snippet/core/detail/deferred_crtp_base.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/detail/is_class_template_declarable_with.cpp b/test/snippet/core/detail/is_class_template_declarable_with.cpp index 4a355170ed..08d90343bc 100644 --- a/test/snippet/core/detail/is_class_template_declarable_with.cpp +++ b/test/snippet/core/detail/is_class_template_declarable_with.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/detail/is_class_template_declarable_with.err.license b/test/snippet/core/detail/is_class_template_declarable_with.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/core/detail/is_class_template_declarable_with.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/core/detail/strong_type_adding_skills.cpp b/test/snippet/core/detail/strong_type_adding_skills.cpp index 747fa83062..5b38ab2e6e 100644 --- a/test/snippet/core/detail/strong_type_adding_skills.cpp +++ b/test/snippet/core/detail/strong_type_adding_skills.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include using seqan3::operator|; diff --git a/test/snippet/core/detail/strong_type_error_window.cpp b/test/snippet/core/detail/strong_type_error_window.cpp index 9cae33ea70..531d3d70fc 100644 --- a/test/snippet/core/detail/strong_type_error_window.cpp +++ b/test/snippet/core/detail/strong_type_error_window.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include struct error : seqan3::detail::strong_type diff --git a/test/snippet/core/detail/strong_type_new_usage.cpp b/test/snippet/core/detail/strong_type_new_usage.cpp index 0ab15f42f9..03bb65ac3a 100644 --- a/test/snippet/core/detail/strong_type_new_usage.cpp +++ b/test/snippet/core/detail/strong_type_new_usage.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/detail/strong_type_usage.cpp b/test/snippet/core/detail/strong_type_usage.cpp index 4357cdb36b..a1fbe8573d 100644 --- a/test/snippet/core/detail/strong_type_usage.cpp +++ b/test/snippet/core/detail/strong_type_usage.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/detail/template_inspection_usage.cpp b/test/snippet/core/detail/template_inspection_usage.cpp index 74b798ceae..9954e40e2c 100644 --- a/test/snippet/core/detail/template_inspection_usage.cpp +++ b/test/snippet/core/detail/template_inspection_usage.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/detail/template_inspection_usage_2.cpp b/test/snippet/core/detail/template_inspection_usage_2.cpp index b64dab9edd..0464923179 100644 --- a/test/snippet/core/detail/template_inspection_usage_2.cpp +++ b/test/snippet/core/detail/template_inspection_usage_2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/core/detail/template_inspection_usage_3.cpp b/test/snippet/core/detail/template_inspection_usage_3.cpp index 1a2e06f660..f1f3e15d86 100644 --- a/test/snippet/core/detail/template_inspection_usage_3.cpp +++ b/test/snippet/core/detail/template_inspection_usage_3.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/detail/detail_record.cpp b/test/snippet/io/detail/detail_record.cpp index 22c2cc2394..fd8ecafc25 100644 --- a/test/snippet/io/detail/detail_record.cpp +++ b/test/snippet/io/detail/detail_record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/detail/iterator_write_range.cpp b/test/snippet/io/detail/iterator_write_range.cpp index 0170dca6dc..f875b525b9 100644 --- a/test/snippet/io/detail/iterator_write_range.cpp +++ b/test/snippet/io/detail/iterator_write_range.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/detail/safe_filesystem_entry_snippet.cpp b/test/snippet/io/detail/safe_filesystem_entry_snippet.cpp index 741ccdf06c..6e5f834f94 100644 --- a/test/snippet/io/detail/safe_filesystem_entry_snippet.cpp +++ b/test/snippet/io/detail/safe_filesystem_entry_snippet.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/record_1.cpp b/test/snippet/io/record_1.cpp index 578b364825..2ce1411326 100644 --- a/test/snippet/io/record_1.cpp +++ b/test/snippet/io/record_1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/record_1.err.license b/test/snippet/io/record_1.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/record_1.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/record_2.cpp b/test/snippet/io/record_2.cpp index 1064b0e2c6..d02a6e5768 100644 --- a/test/snippet/io/record_2.cpp +++ b/test/snippet/io/record_2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/begin_iterator.cpp b/test/snippet/io/sam_file/begin_iterator.cpp index 22711bb942..061c7f33a7 100644 --- a/test/snippet/io/sam_file/begin_iterator.cpp +++ b/test/snippet/io/sam_file/begin_iterator.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sam_file/emplace_back.cpp b/test/snippet/io/sam_file/emplace_back.cpp index 7bba8ff411..776e5ac6c3 100644 --- a/test/snippet/io/sam_file/emplace_back.cpp +++ b/test/snippet/io/sam_file/emplace_back.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/push_back_record.cpp b/test/snippet/io/sam_file/push_back_record.cpp index df7e7a7978..6bbed91cec 100644 --- a/test/snippet/io/sam_file/push_back_record.cpp +++ b/test/snippet/io/sam_file/push_back_record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/push_back_tuple.cpp b/test/snippet/io/sam_file/push_back_tuple.cpp index 56e07e2c79..08e5c7e118 100644 --- a/test/snippet/io/sam_file/push_back_tuple.cpp +++ b/test/snippet/io/sam_file/push_back_tuple.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sam_file/record_based_writing.cpp b/test/snippet/io/sam_file/record_based_writing.cpp index 2ef50f3c7b..c06ce4981f 100644 --- a/test/snippet/io/sam_file/record_based_writing.cpp +++ b/test/snippet/io/sam_file/record_based_writing.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sam_file/record_based_writing2.cpp b/test/snippet/io/sam_file/record_based_writing2.cpp index eea251bbd0..3a531cc701 100644 --- a/test/snippet/io/sam_file/record_based_writing2.cpp +++ b/test/snippet/io/sam_file/record_based_writing2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_begin_and_front.cpp b/test/snippet/io/sam_file/sam_file_input_begin_and_front.cpp index 97f5b22f95..34720f8aa5 100644 --- a/test/snippet/io/sam_file/sam_file_input_begin_and_front.cpp +++ b/test/snippet/io/sam_file/sam_file_input_begin_and_front.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_begin_and_front.out.license b/test/snippet/io/sam_file/sam_file_input_begin_and_front.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_file_input_begin_and_front.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sam_file/sam_file_input_construction_from_filename.cpp b/test/snippet/io/sam_file/sam_file_input_construction_from_filename.cpp index c333f442ef..4a4eaea657 100644 --- a/test/snippet/io/sam_file/sam_file_input_construction_from_filename.cpp +++ b/test/snippet/io/sam_file/sam_file_input_construction_from_filename.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_construction_from_stream.cpp b/test/snippet/io/sam_file/sam_file_input_construction_from_stream.cpp index de92d75892..56aae82d98 100644 --- a/test/snippet/io/sam_file/sam_file_input_construction_from_stream.cpp +++ b/test/snippet/io/sam_file/sam_file_input_construction_from_stream.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_construction_without_automatic_type_deduction.cpp b/test/snippet/io/sam_file/sam_file_input_construction_without_automatic_type_deduction.cpp index 27debf8a28..02bb665365 100644 --- a/test/snippet/io/sam_file/sam_file_input_construction_without_automatic_type_deduction.cpp +++ b/test/snippet/io/sam_file/sam_file_input_construction_without_automatic_type_deduction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_front.cpp b/test/snippet/io/sam_file/sam_file_input_front.cpp index 41b404dd20..206b430397 100644 --- a/test/snippet/io/sam_file/sam_file_input_front.cpp +++ b/test/snippet/io/sam_file/sam_file_input_front.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_get_header.cpp b/test/snippet/io/sam_file/sam_file_input_get_header.cpp index 95d406412c..79931e8b60 100644 --- a/test/snippet/io/sam_file/sam_file_input_get_header.cpp +++ b/test/snippet/io/sam_file/sam_file_input_get_header.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_get_header.err.license b/test/snippet/io/sam_file/sam_file_input_get_header.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_file_input_get_header.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sam_file/sam_file_input_my_traits.cpp b/test/snippet/io/sam_file/sam_file_input_my_traits.cpp index 1f34398dbb..49f68e569b 100644 --- a/test/snippet/io/sam_file/sam_file_input_my_traits.cpp +++ b/test/snippet/io/sam_file/sam_file_input_my_traits.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_reading_custom_fields.cpp b/test/snippet/io/sam_file/sam_file_input_reading_custom_fields.cpp index 70bc086024..02eee4301d 100644 --- a/test/snippet/io/sam_file/sam_file_input_reading_custom_fields.cpp +++ b/test/snippet/io/sam_file/sam_file_input_reading_custom_fields.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_reading_custom_fields.err.license b/test/snippet/io/sam_file/sam_file_input_reading_custom_fields.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_file_input_reading_custom_fields.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sam_file/sam_file_input_reading_filter.cpp b/test/snippet/io/sam_file/sam_file_input_reading_filter.cpp index 6059eae28a..790f2e85a1 100644 --- a/test/snippet/io/sam_file/sam_file_input_reading_filter.cpp +++ b/test/snippet/io/sam_file/sam_file_input_reading_filter.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_reading_filter.err.license b/test/snippet/io/sam_file/sam_file_input_reading_filter.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_file_input_reading_filter.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sam_file/sam_file_input_reading_move_record.cpp b/test/snippet/io/sam_file/sam_file_input_reading_move_record.cpp index 3d77f83b59..f902dcc957 100644 --- a/test/snippet/io/sam_file/sam_file_input_reading_move_record.cpp +++ b/test/snippet/io/sam_file/sam_file_input_reading_move_record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_reading_range_based_for_loop.cpp b/test/snippet/io/sam_file/sam_file_input_reading_range_based_for_loop.cpp index ef917ba47c..74c1165ac7 100644 --- a/test/snippet/io/sam_file/sam_file_input_reading_range_based_for_loop.cpp +++ b/test/snippet/io/sam_file/sam_file_input_reading_range_based_for_loop.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_reading_range_based_for_loop.err.license b/test/snippet/io/sam_file/sam_file_input_reading_range_based_for_loop.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_file_input_reading_range_based_for_loop.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sam_file/sam_file_input_reading_structured_bindings.cpp b/test/snippet/io/sam_file/sam_file_input_reading_structured_bindings.cpp index 564c49af18..3eefc1e037 100644 --- a/test/snippet/io/sam_file/sam_file_input_reading_structured_bindings.cpp +++ b/test/snippet/io/sam_file/sam_file_input_reading_structured_bindings.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_input_reading_structured_bindings.err.license b/test/snippet/io/sam_file/sam_file_input_reading_structured_bindings.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_file_input_reading_structured_bindings.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sam_file/sam_file_output_cout_write.cpp b/test/snippet/io/sam_file/sam_file_output_cout_write.cpp index 5220d00cb1..6045c13053 100644 --- a/test/snippet/io/sam_file/sam_file_output_cout_write.cpp +++ b/test/snippet/io/sam_file/sam_file_output_cout_write.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_output_custom_fields.cpp b/test/snippet/io/sam_file/sam_file_output_custom_fields.cpp index 4eafaa84c8..12db56d43c 100644 --- a/test/snippet/io/sam_file/sam_file_output_custom_fields.cpp +++ b/test/snippet/io/sam_file/sam_file_output_custom_fields.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_output_filename_construction.cpp b/test/snippet/io/sam_file/sam_file_output_filename_construction.cpp index d3c8f10377..d2444f367f 100644 --- a/test/snippet/io/sam_file/sam_file_output_filename_construction.cpp +++ b/test/snippet/io/sam_file/sam_file_output_filename_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_output_filename_construction_with_ref_info.cpp b/test/snippet/io/sam_file/sam_file_output_filename_construction_with_ref_info.cpp index 8702c9ca47..f3b8b4b20b 100644 --- a/test/snippet/io/sam_file/sam_file_output_filename_construction_with_ref_info.cpp +++ b/test/snippet/io/sam_file/sam_file_output_filename_construction_with_ref_info.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sam_file/sam_file_output_format_construction.cpp b/test/snippet/io/sam_file/sam_file_output_format_construction.cpp index ea8a0c83be..022ce523ab 100644 --- a/test/snippet/io/sam_file/sam_file_output_format_construction.cpp +++ b/test/snippet/io/sam_file/sam_file_output_format_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_output_input_range.cpp b/test/snippet/io/sam_file/sam_file_output_input_range.cpp index 1f406a401e..5e029c3227 100644 --- a/test/snippet/io/sam_file/sam_file_output_input_range.cpp +++ b/test/snippet/io/sam_file/sam_file_output_input_range.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_file_output_io_pipeline.cpp b/test/snippet/io/sam_file/sam_file_output_io_pipeline.cpp index af496a6ac6..63f7c7f618 100644 --- a/test/snippet/io/sam_file/sam_file_output_io_pipeline.cpp +++ b/test/snippet/io/sam_file/sam_file_output_io_pipeline.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include //![snippet] diff --git a/test/snippet/io/sam_file/sam_file_output_set_header.cpp b/test/snippet/io/sam_file/sam_file_output_set_header.cpp index b69410d5a3..9847cb0c27 100644 --- a/test/snippet/io/sam_file/sam_file_output_set_header.cpp +++ b/test/snippet/io/sam_file/sam_file_output_set_header.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sam_file/sam_file_output_write_range.cpp b/test/snippet/io/sam_file/sam_file_output_write_range.cpp index 3b8ba5adcd..cb3f353b71 100644 --- a/test/snippet/io/sam_file/sam_file_output_write_range.cpp +++ b/test/snippet/io/sam_file/sam_file_output_write_range.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sam_file/sam_flags.cpp b/test/snippet/io/sam_file/sam_flags.cpp index 5018449a06..38e0d52851 100644 --- a/test/snippet/io/sam_file/sam_flags.cpp +++ b/test/snippet/io/sam_file/sam_flags.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_flags.out.license b/test/snippet/io/sam_file/sam_flags.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_flags.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sam_file/sam_tag_dictionary/general_usage.cpp b/test/snippet/io/sam_file/sam_tag_dictionary/general_usage.cpp index 33fcfb91e8..89ac50d348 100644 --- a/test/snippet/io/sam_file/sam_tag_dictionary/general_usage.cpp +++ b/test/snippet/io/sam_file/sam_tag_dictionary/general_usage.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sam_file/sam_tag_dictionary/general_usage.err.license b/test/snippet/io/sam_file/sam_tag_dictionary/general_usage.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_tag_dictionary/general_usage.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sam_file/sam_tag_dictionary/sam_tag_dictionary.cpp b/test/snippet/io/sam_file/sam_tag_dictionary/sam_tag_dictionary.cpp index be502bacfe..a8d762746d 100644 --- a/test/snippet/io/sam_file/sam_tag_dictionary/sam_tag_dictionary.cpp +++ b/test/snippet/io/sam_file/sam_tag_dictionary/sam_tag_dictionary.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //! [type_overload] #include diff --git a/test/snippet/io/sam_file/sam_tag_dictionary/unknown_tag.cpp b/test/snippet/io/sam_file/sam_tag_dictionary/unknown_tag.cpp index 1985d2a80a..046e80832f 100644 --- a/test/snippet/io/sam_file/sam_tag_dictionary/unknown_tag.cpp +++ b/test/snippet/io/sam_file/sam_tag_dictionary/unknown_tag.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // for std::visit #include diff --git a/test/snippet/io/sam_file/sam_tag_dictionary/unknown_tag.err.license b/test/snippet/io/sam_file/sam_tag_dictionary/unknown_tag.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sam_file/sam_tag_dictionary/unknown_tag.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sequence_file/sequence_file_input_aminoacid.cpp b/test/snippet/io/sequence_file/sequence_file_input_aminoacid.cpp index 7b62382448..74ac4f1961 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_aminoacid.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_aminoacid.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_auto_ref.cpp b/test/snippet/io/sequence_file/sequence_file_input_auto_ref.cpp index b429f7cad7..a141ede4e1 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_auto_ref.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_auto_ref.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_custom_fields.cpp b/test/snippet/io/sequence_file/sequence_file_input_custom_fields.cpp index ef763f1afd..95297e8fbd 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_custom_fields.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_custom_fields.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_custom_fields.err.license b/test/snippet/io/sequence_file/sequence_file_input_custom_fields.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sequence_file/sequence_file_input_custom_fields.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sequence_file/sequence_file_input_decomposed.cpp b/test/snippet/io/sequence_file/sequence_file_input_decomposed.cpp index 4638f786f2..0efaf180cf 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_decomposed.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_decomposed.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_decomposed.err.license b/test/snippet/io/sequence_file/sequence_file_input_decomposed.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sequence_file/sequence_file_input_decomposed.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sequence_file/sequence_file_input_file_view.cpp b/test/snippet/io/sequence_file/sequence_file_input_file_view.cpp index c2f50e33dc..a4adb1a03b 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_file_view.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_file_view.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_istringstream.cpp b/test/snippet/io/sequence_file/sequence_file_input_istringstream.cpp index 86d2cded0f..d97bc3acf0 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_istringstream.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_istringstream.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_record_iter.cpp b/test/snippet/io/sequence_file/sequence_file_input_record_iter.cpp index bb013ac05e..a48ce2ecdd 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_record_iter.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_record_iter.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_record_iter.err.license b/test/snippet/io/sequence_file/sequence_file_input_record_iter.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sequence_file/sequence_file_input_record_iter.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sequence_file/sequence_file_input_record_move.cpp b/test/snippet/io/sequence_file/sequence_file_input_record_move.cpp index 3d034c8761..868ad76b28 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_record_move.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_record_move.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_return_record.cpp b/test/snippet/io/sequence_file/sequence_file_input_return_record.cpp index 2d451dfbd7..cea7e10fc8 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_return_record.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_return_record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_return_record.out.license b/test/snippet/io/sequence_file/sequence_file_input_return_record.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/sequence_file/sequence_file_input_return_record.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/sequence_file/sequence_file_input_template_deduction.cpp b/test/snippet/io/sequence_file/sequence_file_input_template_deduction.cpp index 6c7e6ea85c..2d283588bd 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_template_deduction.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_template_deduction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // std::filesystem::current_path() / "my.fasta" will be deleted after the execution seqan3::test::create_temporary_snippet_file my_fasta{"my.fasta", ""}; diff --git a/test/snippet/io/sequence_file/sequence_file_input_template_specification.cpp b/test/snippet/io/sequence_file/sequence_file_input_template_specification.cpp index dcc51f1580..7a1ba09658 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_template_specification.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_template_specification.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_input_trait_overwrite.cpp b/test/snippet/io/sequence_file/sequence_file_input_trait_overwrite.cpp index 5712c743dc..7e06405c9a 100644 --- a/test/snippet/io/sequence_file/sequence_file_input_trait_overwrite.cpp +++ b/test/snippet/io/sequence_file/sequence_file_input_trait_overwrite.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_batch_write.cpp b/test/snippet/io/sequence_file/sequence_file_output_batch_write.cpp index e474db3cd6..8a9132fdfd 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_batch_write.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_batch_write.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_col_based_writing.cpp b/test/snippet/io/sequence_file/sequence_file_output_col_based_writing.cpp index 180913d3ec..319af650b2 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_col_based_writing.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_col_based_writing.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_cout_write.cpp b/test/snippet/io/sequence_file/sequence_file_output_cout_write.cpp index 48174cfb89..1f635f1f39 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_cout_write.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_cout_write.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/io/sequence_file/sequence_file_output_direct_writing.cpp b/test/snippet/io/sequence_file/sequence_file_output_direct_writing.cpp index 45bbd0644d..92274dabe0 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_direct_writing.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_direct_writing.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_emplace_back.cpp b/test/snippet/io/sequence_file/sequence_file_output_emplace_back.cpp index f68984cfc9..04e1ab5261 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_emplace_back.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_emplace_back.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_fields_trait_1.cpp b/test/snippet/io/sequence_file/sequence_file_output_fields_trait_1.cpp index 6eccf908ab..f06d903075 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_fields_trait_1.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_fields_trait_1.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_fields_trait_2.cpp b/test/snippet/io/sequence_file/sequence_file_output_fields_trait_2.cpp index 749e467d97..f5f1e54c97 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_fields_trait_2.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_fields_trait_2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_push_back_record.cpp b/test/snippet/io/sequence_file/sequence_file_output_push_back_record.cpp index 54b14246c4..44911bb066 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_push_back_record.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_push_back_record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_push_back_tuple.cpp b/test/snippet/io/sequence_file/sequence_file_output_push_back_tuple.cpp index a879ca014d..395b06765e 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_push_back_tuple.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_push_back_tuple.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_range_interface.cpp b/test/snippet/io/sequence_file/sequence_file_output_range_interface.cpp index 5baf3ba9c2..0040cdc6ea 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_range_interface.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_range_interface.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_record_wise_iteration.cpp b/test/snippet/io/sequence_file/sequence_file_output_record_wise_iteration.cpp index 2d78b802be..020064f087 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_record_wise_iteration.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_record_wise_iteration.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/sequence_file/sequence_file_output_template_deduction.cpp b/test/snippet/io/sequence_file/sequence_file_output_template_deduction.cpp index 9e4681ac76..9ff8cbc4b3 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_template_deduction.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_template_deduction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // std::filesystem::current_path() / "my.fasta" will be deleted after the execution seqan3::test::create_temporary_snippet_file my_fasta{"my.fasta", ""}; diff --git a/test/snippet/io/sequence_file/sequence_file_output_view_pipeline.cpp b/test/snippet/io/sequence_file/sequence_file_output_view_pipeline.cpp index 9e37575ddd..f18d3710d1 100644 --- a/test/snippet/io/sequence_file/sequence_file_output_view_pipeline.cpp +++ b/test/snippet/io/sequence_file/sequence_file_output_view_pipeline.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #if !SEQAN3_WORKAROUND_GCC_96070 diff --git a/test/snippet/io/structure_file/structure_file_input_arg_spec.cpp b/test/snippet/io/structure_file/structure_file_input_arg_spec.cpp index e6e200a363..f7690526ba 100644 --- a/test/snippet/io/structure_file/structure_file_input_arg_spec.cpp +++ b/test/snippet/io/structure_file/structure_file_input_arg_spec.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_auto_temp_deduc.cpp b/test/snippet/io/structure_file/structure_file_input_auto_temp_deduc.cpp index a1e2a8fed1..d7826f6257 100644 --- a/test/snippet/io/structure_file/structure_file_input_auto_temp_deduc.cpp +++ b/test/snippet/io/structure_file/structure_file_input_auto_temp_deduc.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_data_out.cpp b/test/snippet/io/structure_file/structure_file_input_data_out.cpp index ece391b261..0986c8cedf 100644 --- a/test/snippet/io/structure_file/structure_file_input_data_out.cpp +++ b/test/snippet/io/structure_file/structure_file_input_data_out.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_filter_criteria.cpp b/test/snippet/io/structure_file/structure_file_input_filter_criteria.cpp index 6dc6ebf175..3bfd4ae9c5 100644 --- a/test/snippet/io/structure_file/structure_file_input_filter_criteria.cpp +++ b/test/snippet/io/structure_file/structure_file_input_filter_criteria.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_filter_criteria.err.license b/test/snippet/io/structure_file/structure_file_input_filter_criteria.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/structure_file/structure_file_input_filter_criteria.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/structure_file/structure_file_input_mod_traits.cpp b/test/snippet/io/structure_file/structure_file_input_mod_traits.cpp index 5ae7202d3f..8a682b3279 100644 --- a/test/snippet/io/structure_file/structure_file_input_mod_traits.cpp +++ b/test/snippet/io/structure_file/structure_file_input_mod_traits.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_move.cpp b/test/snippet/io/structure_file/structure_file_input_move.cpp index b228363179..5c29e48f48 100644 --- a/test/snippet/io/structure_file/structure_file_input_move.cpp +++ b/test/snippet/io/structure_file/structure_file_input_move.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_record_iter.cpp b/test/snippet/io/structure_file/structure_file_input_record_iter.cpp index d0611b2be4..1bedc5cb9b 100644 --- a/test/snippet/io/structure_file/structure_file_input_record_iter.cpp +++ b/test/snippet/io/structure_file/structure_file_input_record_iter.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_record_iter.err.license b/test/snippet/io/structure_file/structure_file_input_record_iter.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/structure_file/structure_file_input_record_iter.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/structure_file/structure_file_input_ref_return.cpp b/test/snippet/io/structure_file/structure_file_input_ref_return.cpp index 1b99b80afc..f66af9cbf4 100644 --- a/test/snippet/io/structure_file/structure_file_input_ref_return.cpp +++ b/test/snippet/io/structure_file/structure_file_input_ref_return.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_ref_return.out.license b/test/snippet/io/structure_file/structure_file_input_ref_return.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/structure_file/structure_file_input_ref_return.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/structure_file/structure_file_input_skip_fields.cpp b/test/snippet/io/structure_file/structure_file_input_skip_fields.cpp index 0ae7aa76fb..8cfe9dc0bd 100644 --- a/test/snippet/io/structure_file/structure_file_input_skip_fields.cpp +++ b/test/snippet/io/structure_file/structure_file_input_skip_fields.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_skip_fields.err.license b/test/snippet/io/structure_file/structure_file_input_skip_fields.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/structure_file/structure_file_input_skip_fields.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/structure_file/structure_file_input_structured_bindings.cpp b/test/snippet/io/structure_file/structure_file_input_structured_bindings.cpp index a75f5c014a..39af4e91b9 100644 --- a/test/snippet/io/structure_file/structure_file_input_structured_bindings.cpp +++ b/test/snippet/io/structure_file/structure_file_input_structured_bindings.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_input_structured_bindings.err.license b/test/snippet/io/structure_file/structure_file_input_structured_bindings.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/structure_file/structure_file_input_structured_bindings.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/structure_file/structure_file_input_trait_def.cpp b/test/snippet/io/structure_file/structure_file_input_trait_def.cpp index a4f4311a62..f90d3f8924 100644 --- a/test/snippet/io/structure_file/structure_file_input_trait_def.cpp +++ b/test/snippet/io/structure_file/structure_file_input_trait_def.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_col_based.cpp b/test/snippet/io/structure_file/structure_file_output_col_based.cpp index bed2da88b9..fc390a553f 100644 --- a/test/snippet/io/structure_file/structure_file_output_col_based.cpp +++ b/test/snippet/io/structure_file/structure_file_output_col_based.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_emplace_back.cpp b/test/snippet/io/structure_file/structure_file_output_emplace_back.cpp index eae45e88cb..54f54a27f5 100644 --- a/test/snippet/io/structure_file/structure_file_output_emplace_back.cpp +++ b/test/snippet/io/structure_file/structure_file_output_emplace_back.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_equal.cpp b/test/snippet/io/structure_file/structure_file_output_equal.cpp index 3a5c2ecfdf..1e8122e947 100644 --- a/test/snippet/io/structure_file/structure_file_output_equal.cpp +++ b/test/snippet/io/structure_file/structure_file_output_equal.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_iter_by_rec.cpp b/test/snippet/io/structure_file/structure_file_output_iter_by_rec.cpp index 9d1270b148..19a50813b9 100644 --- a/test/snippet/io/structure_file/structure_file_output_iter_by_rec.cpp +++ b/test/snippet/io/structure_file/structure_file_output_iter_by_rec.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_mult_rec.cpp b/test/snippet/io/structure_file/structure_file_output_mult_rec.cpp index 3a5c2ecfdf..1e8122e947 100644 --- a/test/snippet/io/structure_file/structure_file_output_mult_rec.cpp +++ b/test/snippet/io/structure_file/structure_file_output_mult_rec.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_pass_rec.cpp b/test/snippet/io/structure_file/structure_file_output_pass_rec.cpp index f6e122471b..b0a484e1e3 100644 --- a/test/snippet/io/structure_file/structure_file_output_pass_rec.cpp +++ b/test/snippet/io/structure_file/structure_file_output_pass_rec.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_pipe_func.cpp b/test/snippet/io/structure_file/structure_file_output_pipe_func.cpp index 490e447eb7..9eea12d58a 100644 --- a/test/snippet/io/structure_file/structure_file_output_pipe_func.cpp +++ b/test/snippet/io/structure_file/structure_file_output_pipe_func.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_pipeline.cpp b/test/snippet/io/structure_file/structure_file_output_pipeline.cpp index a82d9c9916..e818a494a9 100644 --- a/test/snippet/io/structure_file/structure_file_output_pipeline.cpp +++ b/test/snippet/io/structure_file/structure_file_output_pipeline.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_push_back.cpp b/test/snippet/io/structure_file/structure_file_output_push_back.cpp index 96ceefdd2a..e14ec2cb80 100644 --- a/test/snippet/io/structure_file/structure_file_output_push_back.cpp +++ b/test/snippet/io/structure_file/structure_file_output_push_back.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_push_back_2.cpp b/test/snippet/io/structure_file/structure_file_output_push_back_2.cpp index 7133c5e871..a30baaef85 100644 --- a/test/snippet/io/structure_file/structure_file_output_push_back_2.cpp +++ b/test/snippet/io/structure_file/structure_file_output_push_back_2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_temp_param_deduc.cpp b/test/snippet/io/structure_file/structure_file_output_temp_param_deduc.cpp index e16b5b0d79..0fcfbdcffe 100644 --- a/test/snippet/io/structure_file/structure_file_output_temp_param_deduc.cpp +++ b/test/snippet/io/structure_file/structure_file_output_temp_param_deduc.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_write_fields.cpp b/test/snippet/io/structure_file/structure_file_output_write_fields.cpp index 3a19c56df2..b084418d4e 100644 --- a/test/snippet/io/structure_file/structure_file_output_write_fields.cpp +++ b/test/snippet/io/structure_file/structure_file_output_write_fields.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_write_std_out.cpp b/test/snippet/io/structure_file/structure_file_output_write_std_out.cpp index 842d1f0912..7835011721 100644 --- a/test/snippet/io/structure_file/structure_file_output_write_std_out.cpp +++ b/test/snippet/io/structure_file/structure_file_output_write_std_out.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/structure_file/structure_file_output_write_std_out.out.license b/test/snippet/io/structure_file/structure_file_output_write_std_out.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/structure_file/structure_file_output_write_std_out.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/views/async_input_buffer.cpp b/test/snippet/io/views/async_input_buffer.cpp index 45a966a1c7..5949b139e2 100644 --- a/test/snippet/io/views/async_input_buffer.cpp +++ b/test/snippet/io/views/async_input_buffer.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // std::rand #include // std::async #include // std::string diff --git a/test/snippet/io/views/async_input_buffer.err.license b/test/snippet/io/views/async_input_buffer.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/views/async_input_buffer.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/views/detail/take_exactly.cpp b/test/snippet/io/views/detail/take_exactly.cpp index fb590a0795..edcaf53a3f 100644 --- a/test/snippet/io/views/detail/take_exactly.cpp +++ b/test/snippet/io/views/detail/take_exactly.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/views/detail/take_exactly.err.license b/test/snippet/io/views/detail/take_exactly.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/views/detail/take_exactly.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/views/detail/take_line_view_adaptor_def.cpp b/test/snippet/io/views/detail/take_line_view_adaptor_def.cpp index 26b8490c24..425a00d418 100644 --- a/test/snippet/io/views/detail/take_line_view_adaptor_def.cpp +++ b/test/snippet/io/views/detail/take_line_view_adaptor_def.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/views/detail/take_line_view_behaviour.cpp b/test/snippet/io/views/detail/take_line_view_behaviour.cpp index 3bc4a86b61..c86f4e3bf1 100644 --- a/test/snippet/io/views/detail/take_line_view_behaviour.cpp +++ b/test/snippet/io/views/detail/take_line_view_behaviour.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/io/views/detail/take_line_view_behaviour.err.license b/test/snippet/io/views/detail/take_line_view_behaviour.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/views/detail/take_line_view_behaviour.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/views/detail/take_line_view_tokenise.cpp b/test/snippet/io/views/detail/take_line_view_tokenise.cpp index f6fe0e3fdd..6483d2ab35 100644 --- a/test/snippet/io/views/detail/take_line_view_tokenise.cpp +++ b/test/snippet/io/views/detail/take_line_view_tokenise.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/io/views/detail/take_line_view_tokenise.err.license b/test/snippet/io/views/detail/take_line_view_tokenise.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/views/detail/take_line_view_tokenise.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/io/views/detail/take_until_view.cpp b/test/snippet/io/views/detail/take_until_view.cpp index 14373b0c11..86b4620c6f 100644 --- a/test/snippet/io/views/detail/take_until_view.cpp +++ b/test/snippet/io/views/detail/take_until_view.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // for std::views::reverse #include diff --git a/test/snippet/io/views/detail/take_until_view.err.license b/test/snippet/io/views/detail/take_until_view.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/io/views/detail/take_until_view.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/range/detail/random_access_iterator.cpp b/test/snippet/range/detail/random_access_iterator.cpp index 915aee3264..9e02b2acb9 100644 --- a/test/snippet/range/detail/random_access_iterator.cpp +++ b/test/snippet/range/detail/random_access_iterator.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include template diff --git a/test/snippet/range/views/range_view_all_composability.cpp b/test/snippet/range/views/range_view_all_composability.cpp index 1424e2c1c2..2fc7c7ae8a 100644 --- a/test/snippet/range/views/range_view_all_composability.cpp +++ b/test/snippet/range/views/range_view_all_composability.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/range/views/range_view_all_composability.err.license b/test/snippet/range/views/range_view_all_composability.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/range/views/range_view_all_composability.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/range/views/range_view_all_notation.cpp b/test/snippet/range/views/range_view_all_notation.cpp index 82284021c0..48cc96f3a7 100644 --- a/test/snippet/range/views/range_view_all_notation.cpp +++ b/test/snippet/range/views/range_view_all_notation.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/range/views/range_view_all_notation.out.license b/test/snippet/range/views/range_view_all_notation.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/range/views/range_view_all_notation.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/range/views/range_view_all_retransform.cpp b/test/snippet/range/views/range_view_all_retransform.cpp index 28dca8d066..ad8f248c9a 100644 --- a/test/snippet/range/views/range_view_all_retransform.cpp +++ b/test/snippet/range/views/range_view_all_retransform.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/release/3.0.0_complement-and-translate-without-copying.cpp b/test/snippet/release/3.0.0_complement-and-translate-without-copying.cpp index 60854f5080..0a3d9c272a 100644 --- a/test/snippet/release/3.0.0_complement-and-translate-without-copying.cpp +++ b/test/snippet/release/3.0.0_complement-and-translate-without-copying.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/release/3.0.0_complement-and-translate-without-copying.err.license b/test/snippet/release/3.0.0_complement-and-translate-without-copying.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/release/3.0.0_complement-and-translate-without-copying.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/release/3.0.0_file-conversion.cpp b/test/snippet/release/3.0.0_file-conversion.cpp index 521b3e97d8..4e38dc6ad6 100644 --- a/test/snippet/release/3.0.0_file-conversion.cpp +++ b/test/snippet/release/3.0.0_file-conversion.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //![main] #include #include diff --git a/test/snippet/release/3.0.0_read-fasta-and-print-entities.cpp b/test/snippet/release/3.0.0_read-fasta-and-print-entities.cpp index 294a59067a..4102c2ac1d 100644 --- a/test/snippet/release/3.0.0_read-fasta-and-print-entities.cpp +++ b/test/snippet/release/3.0.0_read-fasta-and-print-entities.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //![main] #include #include diff --git a/test/snippet/release/3.0.1_parallel-alignments.cpp b/test/snippet/release/3.0.1_parallel-alignments.cpp index adc122a045..906b0e5e05 100644 --- a/test/snippet/release/3.0.1_parallel-alignments.cpp +++ b/test/snippet/release/3.0.1_parallel-alignments.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/release/3.0.1_parallel-alignments.out.license b/test/snippet/release/3.0.1_parallel-alignments.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/release/3.0.1_parallel-alignments.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/release/3.0.2_dynamic-hit-configuration.cpp b/test/snippet/release/3.0.2_dynamic-hit-configuration.cpp index e841d33ae8..e97fcd5929 100644 --- a/test/snippet/release/3.0.2_dynamic-hit-configuration.cpp +++ b/test/snippet/release/3.0.2_dynamic-hit-configuration.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/release/3.0.2_dynamic-hit-configuration.err.license b/test/snippet/release/3.0.2_dynamic-hit-configuration.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/release/3.0.2_dynamic-hit-configuration.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/release/3.0.2_lazy-search-result-range.cpp b/test/snippet/release/3.0.2_lazy-search-result-range.cpp index c608361f63..13e4820044 100644 --- a/test/snippet/release/3.0.2_lazy-search-result-range.cpp +++ b/test/snippet/release/3.0.2_lazy-search-result-range.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/release/3.0.2_lazy-search-result-range.err.license b/test/snippet/release/3.0.2_lazy-search-result-range.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/release/3.0.2_lazy-search-result-range.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/release/3.0.2_user-callback-in-alignment-and-search.cpp b/test/snippet/release/3.0.2_user-callback-in-alignment-and-search.cpp index fb8f010d47..31e2e66cee 100644 --- a/test/snippet/release/3.0.2_user-callback-in-alignment-and-search.cpp +++ b/test/snippet/release/3.0.2_user-callback-in-alignment-and-search.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/release/3.0.2_user-callback-in-alignment-and-search.err.license b/test/snippet/release/3.0.2_user-callback-in-alignment-and-search.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/release/3.0.2_user-callback-in-alignment-and-search.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/release/3.0.3_io-record.cpp b/test/snippet/release/3.0.3_io-record.cpp index 756ca7c44e..c639afd970 100644 --- a/test/snippet/release/3.0.3_io-record.cpp +++ b/test/snippet/release/3.0.3_io-record.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + //![main] #include #include diff --git a/test/snippet/release/3.0.3_literals-namespace.cpp b/test/snippet/release/3.0.3_literals-namespace.cpp index 7afcda9d28..3a2f33c2b1 100644 --- a/test/snippet/release/3.0.3_literals-namespace.cpp +++ b/test/snippet/release/3.0.3_literals-namespace.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/release/README.md b/test/snippet/release/README.md index b7253b4292..6fb4d288ca 100644 --- a/test/snippet/release/README.md +++ b/test/snippet/release/README.md @@ -1,3 +1,8 @@ + + Snippets contained in this folder are part of our release announcement. If anything breaks in here, please mark the existing snippets in the release announcement as out-dated and link to the diff --git a/test/snippet/search/bi_fm_index.cpp b/test/snippet/search/bi_fm_index.cpp index e6288fe8c1..43236a1bac 100644 --- a/test/snippet/search/bi_fm_index.cpp +++ b/test/snippet/search/bi_fm_index.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/bi_fm_index.err.license b/test/snippet/search/bi_fm_index.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/bi_fm_index.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/bi_fm_index_collection.cpp b/test/snippet/search/bi_fm_index_collection.cpp index 90c229c822..4594b9f620 100644 --- a/test/snippet/search/bi_fm_index_collection.cpp +++ b/test/snippet/search/bi_fm_index_collection.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/bi_fm_index_collection.err.license b/test/snippet/search/bi_fm_index_collection.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/bi_fm_index_collection.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/bi_fm_index_cursor_cycle.cpp b/test/snippet/search/bi_fm_index_cursor_cycle.cpp index 18aadbed24..178ad8c4ba 100644 --- a/test/snippet/search/bi_fm_index_cursor_cycle.cpp +++ b/test/snippet/search/bi_fm_index_cursor_cycle.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/bi_fm_index_cursor_cycle.err.license b/test/snippet/search/bi_fm_index_cursor_cycle.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/bi_fm_index_cursor_cycle.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/bi_fm_index_cursor_extend_left_seq.cpp b/test/snippet/search/bi_fm_index_cursor_extend_left_seq.cpp index af9c2f2fa9..c35e10ab43 100644 --- a/test/snippet/search/bi_fm_index_cursor_extend_left_seq.cpp +++ b/test/snippet/search/bi_fm_index_cursor_extend_left_seq.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/bi_fm_index_cursor_extend_left_seq.err.license b/test/snippet/search/bi_fm_index_cursor_extend_left_seq.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/bi_fm_index_cursor_extend_left_seq.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/bi_fm_index_cursor_to_fwd_cursor.cpp b/test/snippet/search/bi_fm_index_cursor_to_fwd_cursor.cpp index 0def111fa7..a5e7cd4240 100644 --- a/test/snippet/search/bi_fm_index_cursor_to_fwd_cursor.cpp +++ b/test/snippet/search/bi_fm_index_cursor_to_fwd_cursor.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/bi_fm_index_cursor_to_fwd_cursor.err.license b/test/snippet/search/bi_fm_index_cursor_to_fwd_cursor.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/bi_fm_index_cursor_to_fwd_cursor.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/configuration_default.cpp b/test/snippet/search/configuration_default.cpp index db4b7b269b..a680a13c9b 100644 --- a/test/snippet/search/configuration_default.cpp +++ b/test/snippet/search/configuration_default.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/search/configuration_error.cpp b/test/snippet/search/configuration_error.cpp index c20dcbed9f..7df5ec8c88 100644 --- a/test/snippet/search/configuration_error.cpp +++ b/test/snippet/search/configuration_error.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/configuration_on_result.cpp b/test/snippet/search/configuration_on_result.cpp index 632ce23388..657ed49d0c 100644 --- a/test/snippet/search/configuration_on_result.cpp +++ b/test/snippet/search/configuration_on_result.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/configuration_output.cpp b/test/snippet/search/configuration_output.cpp index 4a81fe9aa9..998bda5e01 100644 --- a/test/snippet/search/configuration_output.cpp +++ b/test/snippet/search/configuration_output.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/configuration_parallel.cpp b/test/snippet/search/configuration_parallel.cpp index fcc8328f6d..57690a88d0 100644 --- a/test/snippet/search/configuration_parallel.cpp +++ b/test/snippet/search/configuration_parallel.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/search/dream_index/counting_agent.cpp b/test/snippet/search/dream_index/counting_agent.cpp index b9f5e8a815..cf49ef4656 100644 --- a/test/snippet/search/dream_index/counting_agent.cpp +++ b/test/snippet/search/dream_index/counting_agent.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/search/dream_index/counting_agent.err.license b/test/snippet/search/dream_index/counting_agent.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/dream_index/counting_agent.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/dream_index/counting_agent_construction.cpp b/test/snippet/search/dream_index/counting_agent_construction.cpp index 34aecf67bb..b4b55c1a9f 100644 --- a/test/snippet/search/dream_index/counting_agent_construction.cpp +++ b/test/snippet/search/dream_index/counting_agent_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/search/dream_index/counting_vector.cpp b/test/snippet/search/dream_index/counting_vector.cpp index 0313d4b58c..e351937b40 100644 --- a/test/snippet/search/dream_index/counting_vector.cpp +++ b/test/snippet/search/dream_index/counting_vector.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/dream_index/counting_vector.err.license b/test/snippet/search/dream_index/counting_vector.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/dream_index/counting_vector.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/dream_index/example_query_genome_region.cpp b/test/snippet/search/dream_index/example_query_genome_region.cpp old mode 100755 new mode 100644 index 1219c94063..1952a3965e --- a/test/snippet/search/dream_index/example_query_genome_region.cpp +++ b/test/snippet/search/dream_index/example_query_genome_region.cpp @@ -1,8 +1,12 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + +#include #include #include -#include -#include #include +#include using namespace seqan3::literals; diff --git a/test/snippet/search/dream_index/example_query_genome_region.err b/test/snippet/search/dream_index/example_query_genome_region.err old mode 100755 new mode 100644 diff --git a/test/snippet/search/dream_index/example_query_genome_region.err.license b/test/snippet/search/dream_index/example_query_genome_region.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/dream_index/example_query_genome_region.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/dream_index/interleaved_bloom_filter_clear.cpp b/test/snippet/search/dream_index/interleaved_bloom_filter_clear.cpp index 77a84e1ee5..f8d150889d 100644 --- a/test/snippet/search/dream_index/interleaved_bloom_filter_clear.cpp +++ b/test/snippet/search/dream_index/interleaved_bloom_filter_clear.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/search/dream_index/interleaved_bloom_filter_clear.err.license b/test/snippet/search/dream_index/interleaved_bloom_filter_clear.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/dream_index/interleaved_bloom_filter_clear.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/dream_index/interleaved_bloom_filter_constructor.cpp b/test/snippet/search/dream_index/interleaved_bloom_filter_constructor.cpp index 235db2f4ce..bce8c16b8a 100644 --- a/test/snippet/search/dream_index/interleaved_bloom_filter_constructor.cpp +++ b/test/snippet/search/dream_index/interleaved_bloom_filter_constructor.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/search/dream_index/interleaved_bloom_filter_constructor_compressed.cpp b/test/snippet/search/dream_index/interleaved_bloom_filter_constructor_compressed.cpp index ce76ec610c..2e38308166 100644 --- a/test/snippet/search/dream_index/interleaved_bloom_filter_constructor_compressed.cpp +++ b/test/snippet/search/dream_index/interleaved_bloom_filter_constructor_compressed.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/search/dream_index/interleaved_bloom_filter_constructor_uncompress.cpp b/test/snippet/search/dream_index/interleaved_bloom_filter_constructor_uncompress.cpp index d78e6ca347..28005d0939 100644 --- a/test/snippet/search/dream_index/interleaved_bloom_filter_constructor_uncompress.cpp +++ b/test/snippet/search/dream_index/interleaved_bloom_filter_constructor_uncompress.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/search/dream_index/interleaved_bloom_filter_emplace.cpp b/test/snippet/search/dream_index/interleaved_bloom_filter_emplace.cpp index ef4d9db5f4..118c87ff63 100644 --- a/test/snippet/search/dream_index/interleaved_bloom_filter_emplace.cpp +++ b/test/snippet/search/dream_index/interleaved_bloom_filter_emplace.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/search/dream_index/interleaved_bloom_filter_increase_bin_number_to.cpp b/test/snippet/search/dream_index/interleaved_bloom_filter_increase_bin_number_to.cpp index 9e5395b57d..f86e9b0218 100644 --- a/test/snippet/search/dream_index/interleaved_bloom_filter_increase_bin_number_to.cpp +++ b/test/snippet/search/dream_index/interleaved_bloom_filter_increase_bin_number_to.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/dream_index/interleaved_bloom_filter_increase_bin_number_to.err.license b/test/snippet/search/dream_index/interleaved_bloom_filter_increase_bin_number_to.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/dream_index/interleaved_bloom_filter_increase_bin_number_to.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/dream_index/membership_agent_bulk_contains.cpp b/test/snippet/search/dream_index/membership_agent_bulk_contains.cpp index a151db37b9..1fdde84af6 100644 --- a/test/snippet/search/dream_index/membership_agent_bulk_contains.cpp +++ b/test/snippet/search/dream_index/membership_agent_bulk_contains.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/dream_index/membership_agent_bulk_contains.err.license b/test/snippet/search/dream_index/membership_agent_bulk_contains.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/dream_index/membership_agent_bulk_contains.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/dream_index/membership_agent_construction.cpp b/test/snippet/search/dream_index/membership_agent_construction.cpp index ae3d2d041e..9aef76cdcc 100644 --- a/test/snippet/search/dream_index/membership_agent_construction.cpp +++ b/test/snippet/search/dream_index/membership_agent_construction.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/search/dynamic_hit_configuration_example.cpp b/test/snippet/search/dynamic_hit_configuration_example.cpp index d1d5a33ade..0786fdedaa 100644 --- a/test/snippet/search/dynamic_hit_configuration_example.cpp +++ b/test/snippet/search/dynamic_hit_configuration_example.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/search/fm_index.cpp b/test/snippet/search/fm_index.cpp index 737a1b8599..bf93e6ed8e 100644 --- a/test/snippet/search/fm_index.cpp +++ b/test/snippet/search/fm_index.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/fm_index.err.license b/test/snippet/search/fm_index.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/fm_index.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/fm_index_collection.cpp b/test/snippet/search/fm_index_collection.cpp index 4cdb76de59..1f12899f79 100644 --- a/test/snippet/search/fm_index_collection.cpp +++ b/test/snippet/search/fm_index_collection.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/fm_index_collection.err.license b/test/snippet/search/fm_index_collection.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/fm_index_collection.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/fm_index_cursor.cpp b/test/snippet/search/fm_index_cursor.cpp index 9af5f4a5f3..b30a3bf507 100644 --- a/test/snippet/search/fm_index_cursor.cpp +++ b/test/snippet/search/fm_index_cursor.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/fm_index_cursor.err.license b/test/snippet/search/fm_index_cursor.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/fm_index_cursor.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/hit_configuration_examples.cpp b/test/snippet/search/hit_configuration_examples.cpp index bb01a7db36..75afd72d26 100644 --- a/test/snippet/search/hit_configuration_examples.cpp +++ b/test/snippet/search/hit_configuration_examples.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/search/kmer_index/shape.cpp b/test/snippet/search/kmer_index/shape.cpp index 363abf9183..7fc464ff5f 100644 --- a/test/snippet/search/kmer_index/shape.cpp +++ b/test/snippet/search/kmer_index/shape.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // For std::ranges::size() #include // For seqan3::debug_stream diff --git a/test/snippet/search/kmer_index/shape.err.license b/test/snippet/search/kmer_index/shape.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/kmer_index/shape.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/search.cpp b/test/snippet/search/search.cpp index b5bfeec4f8..086a4ff9d6 100644 --- a/test/snippet/search/search.cpp +++ b/test/snippet/search/search.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/search.err.license b/test/snippet/search/search.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/search.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/search_with_user_callback.cpp b/test/snippet/search/search_with_user_callback.cpp index 414c6cbf1e..e2aaf5e5dc 100644 --- a/test/snippet/search/search_with_user_callback.cpp +++ b/test/snippet/search/search_with_user_callback.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/search/search_with_user_callback.err.license b/test/snippet/search/search_with_user_callback.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/search_with_user_callback.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/views/kmer_hash.cpp b/test/snippet/search/views/kmer_hash.cpp index 3f8a61e40b..e39c173ba8 100644 --- a/test/snippet/search/views/kmer_hash.cpp +++ b/test/snippet/search/views/kmer_hash.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/search/views/kmer_hash.err.license b/test/snippet/search/views/kmer_hash.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/views/kmer_hash.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/views/minimiser.cpp b/test/snippet/search/views/minimiser.cpp index 7ca8534686..4c9423e97f 100644 --- a/test/snippet/search/views/minimiser.cpp +++ b/test/snippet/search/views/minimiser.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/search/views/minimiser.err.license b/test/snippet/search/views/minimiser.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/views/minimiser.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/search/views/minimiser_hash.cpp b/test/snippet/search/views/minimiser_hash.cpp index 352975f561..0fb266fd2c 100644 --- a/test/snippet/search/views/minimiser_hash.cpp +++ b/test/snippet/search/views/minimiser_hash.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/search/views/minimiser_hash.err.license b/test/snippet/search/views/minimiser_hash.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/search/views/minimiser_hash.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/snippet_main.cpp b/test/snippet/snippet_main.cpp index 905869dfa3..daf198700a 100644 --- a/test/snippet/snippet_main.cpp +++ b/test/snippet/snippet_main.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + int main() { return 0; diff --git a/test/snippet/std/view/subrange.cpp b/test/snippet/std/view/subrange.cpp index 20e2f063e9..233d39cf6c 100644 --- a/test/snippet/std/view/subrange.cpp +++ b/test/snippet/std/view/subrange.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/std/view/subrange.err.license b/test/snippet/std/view/subrange.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/std/view/subrange.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/test/simd_utility.cpp b/test/snippet/test/simd_utility.cpp index 140f8af818..0be386693b 100644 --- a/test/snippet/test/simd_utility.cpp +++ b/test/snippet/test/simd_utility.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/test/tmp_directory.cpp b/test/snippet/test/tmp_directory.cpp index 138f298f13..58a5411bb3 100644 --- a/test/snippet/test/tmp_directory.cpp +++ b/test/snippet/test/tmp_directory.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/bloom_filter/bloom_filter_constructor.cpp b/test/snippet/utility/bloom_filter/bloom_filter_constructor.cpp index b3ab9348aa..cc601c0793 100644 --- a/test/snippet/utility/bloom_filter/bloom_filter_constructor.cpp +++ b/test/snippet/utility/bloom_filter/bloom_filter_constructor.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/bloom_filter/bloom_filter_constructor_compressed.cpp b/test/snippet/utility/bloom_filter/bloom_filter_constructor_compressed.cpp index 8fe860e81d..b57406657a 100644 --- a/test/snippet/utility/bloom_filter/bloom_filter_constructor_compressed.cpp +++ b/test/snippet/utility/bloom_filter/bloom_filter_constructor_compressed.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/bloom_filter/bloom_filter_contains.cpp b/test/snippet/utility/bloom_filter/bloom_filter_contains.cpp index 03e7a54ef8..de6dc7e82e 100644 --- a/test/snippet/utility/bloom_filter/bloom_filter_contains.cpp +++ b/test/snippet/utility/bloom_filter/bloom_filter_contains.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/bloom_filter/bloom_filter_contains.err.license b/test/snippet/utility/bloom_filter/bloom_filter_contains.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/bloom_filter/bloom_filter_contains.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/bloom_filter/bloom_filter_count.cpp b/test/snippet/utility/bloom_filter/bloom_filter_count.cpp index ea03154d93..2e9220210a 100644 --- a/test/snippet/utility/bloom_filter/bloom_filter_count.cpp +++ b/test/snippet/utility/bloom_filter/bloom_filter_count.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/bloom_filter/bloom_filter_count.err.license b/test/snippet/utility/bloom_filter/bloom_filter_count.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/bloom_filter/bloom_filter_count.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/bloom_filter/bloom_filter_emplace.cpp b/test/snippet/utility/bloom_filter/bloom_filter_emplace.cpp index a6ce05c16f..b69bcec9a7 100644 --- a/test/snippet/utility/bloom_filter/bloom_filter_emplace.cpp +++ b/test/snippet/utility/bloom_filter/bloom_filter_emplace.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/bloom_filter/bloom_filter_reset.cpp b/test/snippet/utility/bloom_filter/bloom_filter_reset.cpp index c65f8bf67b..d986bcded0 100644 --- a/test/snippet/utility/bloom_filter/bloom_filter_reset.cpp +++ b/test/snippet/utility/bloom_filter/bloom_filter_reset.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/bloom_filter/bloom_filter_reset.err.license b/test/snippet/utility/bloom_filter/bloom_filter_reset.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/bloom_filter/bloom_filter_reset.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/char_operations/char_predicate.cpp b/test/snippet/utility/char_operations/char_predicate.cpp index 92f8c633a2..a7c0983147 100644 --- a/test/snippet/utility/char_operations/char_predicate.cpp +++ b/test/snippet/utility/char_operations/char_predicate.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/char_operations/char_predicate_is_char.cpp b/test/snippet/utility/char_operations/char_predicate_is_char.cpp index 9cef0df58c..6231a18dab 100644 --- a/test/snippet/utility/char_operations/char_predicate_is_char.cpp +++ b/test/snippet/utility/char_operations/char_predicate_is_char.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/char_operations/char_predicate_is_in_interval.cpp b/test/snippet/utility/char_operations/char_predicate_is_in_interval.cpp index 7cbf125e2e..77dab9599a 100644 --- a/test/snippet/utility/char_operations/char_predicate_is_in_interval.cpp +++ b/test/snippet/utility/char_operations/char_predicate_is_in_interval.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/char_operations/char_predicate_is_operator.cpp b/test/snippet/utility/char_operations/char_predicate_is_operator.cpp index 215fefa06e..1d1d0fa14f 100644 --- a/test/snippet/utility/char_operations/char_predicate_is_operator.cpp +++ b/test/snippet/utility/char_operations/char_predicate_is_operator.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/char_operations/char_predicate_is_operator.out.license b/test/snippet/utility/char_operations/char_predicate_is_operator.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/char_operations/char_predicate_is_operator.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/aligned_allocator.cpp b/test/snippet/utility/container/aligned_allocator.cpp index 44c37a4d4c..506720e8f5 100644 --- a/test/snippet/utility/container/aligned_allocator.cpp +++ b/test/snippet/utility/container/aligned_allocator.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/aligned_allocator.out.license b/test/snippet/utility/container/aligned_allocator.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/aligned_allocator.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_begin.cpp b/test/snippet/utility/container/dynamic_bitset_begin.cpp index 5006fd69d7..17196484aa 100644 --- a/test/snippet/utility/container/dynamic_bitset_begin.cpp +++ b/test/snippet/utility/container/dynamic_bitset_begin.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_begin.err.license b/test/snippet/utility/container/dynamic_bitset_begin.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_begin.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_binary_and_member.cpp b/test/snippet/utility/container/dynamic_bitset_binary_and_member.cpp index 13754ba919..bef3461768 100644 --- a/test/snippet/utility/container/dynamic_bitset_binary_and_member.cpp +++ b/test/snippet/utility/container/dynamic_bitset_binary_and_member.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_binary_and_member.err.license b/test/snippet/utility/container/dynamic_bitset_binary_and_member.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_binary_and_member.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_binary_or_member.cpp b/test/snippet/utility/container/dynamic_bitset_binary_or_member.cpp index ed77012bc0..5aa58bd792 100644 --- a/test/snippet/utility/container/dynamic_bitset_binary_or_member.cpp +++ b/test/snippet/utility/container/dynamic_bitset_binary_or_member.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_binary_or_member.err.license b/test/snippet/utility/container/dynamic_bitset_binary_or_member.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_binary_or_member.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_binary_xor_member.cpp b/test/snippet/utility/container/dynamic_bitset_binary_xor_member.cpp index aaf5ef930d..5efe0da8b5 100644 --- a/test/snippet/utility/container/dynamic_bitset_binary_xor_member.cpp +++ b/test/snippet/utility/container/dynamic_bitset_binary_xor_member.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_binary_xor_member.err.license b/test/snippet/utility/container/dynamic_bitset_binary_xor_member.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_binary_xor_member.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_construct_string.cpp b/test/snippet/utility/container/dynamic_bitset_construct_string.cpp index b993947acd..b781e85c05 100644 --- a/test/snippet/utility/container/dynamic_bitset_construct_string.cpp +++ b/test/snippet/utility/container/dynamic_bitset_construct_string.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_construct_string.err.license b/test/snippet/utility/container/dynamic_bitset_construct_string.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_construct_string.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_construct_uint64_t.cpp b/test/snippet/utility/container/dynamic_bitset_construct_uint64_t.cpp index b4ecf1cecc..1cbc23bb2b 100644 --- a/test/snippet/utility/container/dynamic_bitset_construct_uint64_t.cpp +++ b/test/snippet/utility/container/dynamic_bitset_construct_uint64_t.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_construct_uint64_t.err.license b/test/snippet/utility/container/dynamic_bitset_construct_uint64_t.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_construct_uint64_t.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_flip.cpp b/test/snippet/utility/container/dynamic_bitset_flip.cpp index 8279e4efbc..31fed4224e 100644 --- a/test/snippet/utility/container/dynamic_bitset_flip.cpp +++ b/test/snippet/utility/container/dynamic_bitset_flip.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_flip.err.license b/test/snippet/utility/container/dynamic_bitset_flip.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_flip.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_flip_all.cpp b/test/snippet/utility/container/dynamic_bitset_flip_all.cpp index 0dc2d11a39..11af8f538e 100644 --- a/test/snippet/utility/container/dynamic_bitset_flip_all.cpp +++ b/test/snippet/utility/container/dynamic_bitset_flip_all.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_flip_all.err.license b/test/snippet/utility/container/dynamic_bitset_flip_all.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_flip_all.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_flip_pos.cpp b/test/snippet/utility/container/dynamic_bitset_flip_pos.cpp index 79f1e3cfc9..214a1c96d1 100644 --- a/test/snippet/utility/container/dynamic_bitset_flip_pos.cpp +++ b/test/snippet/utility/container/dynamic_bitset_flip_pos.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_flip_pos.err.license b/test/snippet/utility/container/dynamic_bitset_flip_pos.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_flip_pos.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_reset_all.cpp b/test/snippet/utility/container/dynamic_bitset_reset_all.cpp index b3c51d311b..8bcebc8145 100644 --- a/test/snippet/utility/container/dynamic_bitset_reset_all.cpp +++ b/test/snippet/utility/container/dynamic_bitset_reset_all.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_reset_all.err.license b/test/snippet/utility/container/dynamic_bitset_reset_all.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_reset_all.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_reset_pos.cpp b/test/snippet/utility/container/dynamic_bitset_reset_pos.cpp index f8669e8793..4292bff70c 100644 --- a/test/snippet/utility/container/dynamic_bitset_reset_pos.cpp +++ b/test/snippet/utility/container/dynamic_bitset_reset_pos.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_reset_pos.err.license b/test/snippet/utility/container/dynamic_bitset_reset_pos.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_reset_pos.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_resize.cpp b/test/snippet/utility/container/dynamic_bitset_resize.cpp index ac9eb3dd1d..54eb67da86 100644 --- a/test/snippet/utility/container/dynamic_bitset_resize.cpp +++ b/test/snippet/utility/container/dynamic_bitset_resize.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_resize.err.license b/test/snippet/utility/container/dynamic_bitset_resize.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_resize.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_set_all.cpp b/test/snippet/utility/container/dynamic_bitset_set_all.cpp index 9846c38be5..3fcd4f77e5 100644 --- a/test/snippet/utility/container/dynamic_bitset_set_all.cpp +++ b/test/snippet/utility/container/dynamic_bitset_set_all.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_set_all.err.license b/test/snippet/utility/container/dynamic_bitset_set_all.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_set_all.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_set_pos.cpp b/test/snippet/utility/container/dynamic_bitset_set_pos.cpp index 030b550d8f..bca4e782c1 100644 --- a/test/snippet/utility/container/dynamic_bitset_set_pos.cpp +++ b/test/snippet/utility/container/dynamic_bitset_set_pos.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_set_pos.err.license b/test/snippet/utility/container/dynamic_bitset_set_pos.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_set_pos.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_shift_left_copy.cpp b/test/snippet/utility/container/dynamic_bitset_shift_left_copy.cpp index 12b28a29c3..490fef8bc2 100644 --- a/test/snippet/utility/container/dynamic_bitset_shift_left_copy.cpp +++ b/test/snippet/utility/container/dynamic_bitset_shift_left_copy.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_shift_left_copy.err.license b/test/snippet/utility/container/dynamic_bitset_shift_left_copy.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_shift_left_copy.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_shift_left_inplace.cpp b/test/snippet/utility/container/dynamic_bitset_shift_left_inplace.cpp index 6a0d4c245e..d59456865a 100644 --- a/test/snippet/utility/container/dynamic_bitset_shift_left_inplace.cpp +++ b/test/snippet/utility/container/dynamic_bitset_shift_left_inplace.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_shift_left_inplace.err.license b/test/snippet/utility/container/dynamic_bitset_shift_left_inplace.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_shift_left_inplace.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_shift_right_copy.cpp b/test/snippet/utility/container/dynamic_bitset_shift_right_copy.cpp index 601aca8b31..ce555a65b3 100644 --- a/test/snippet/utility/container/dynamic_bitset_shift_right_copy.cpp +++ b/test/snippet/utility/container/dynamic_bitset_shift_right_copy.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_shift_right_copy.err.license b/test/snippet/utility/container/dynamic_bitset_shift_right_copy.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_shift_right_copy.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_shift_right_inplace.cpp b/test/snippet/utility/container/dynamic_bitset_shift_right_inplace.cpp index 051452b00b..0a29beab54 100644 --- a/test/snippet/utility/container/dynamic_bitset_shift_right_inplace.cpp +++ b/test/snippet/utility/container/dynamic_bitset_shift_right_inplace.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_shift_right_inplace.err.license b/test/snippet/utility/container/dynamic_bitset_shift_right_inplace.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_shift_right_inplace.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_subscript.cpp b/test/snippet/utility/container/dynamic_bitset_subscript.cpp index 1bb9a3d816..bff76e3765 100644 --- a/test/snippet/utility/container/dynamic_bitset_subscript.cpp +++ b/test/snippet/utility/container/dynamic_bitset_subscript.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_subscript.err.license b/test/snippet/utility/container/dynamic_bitset_subscript.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_subscript.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_usage.cpp b/test/snippet/utility/container/dynamic_bitset_usage.cpp index 1f6c52b6ca..90552885f5 100644 --- a/test/snippet/utility/container/dynamic_bitset_usage.cpp +++ b/test/snippet/utility/container/dynamic_bitset_usage.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/dynamic_bitset_usage.err.license b/test/snippet/utility/container/dynamic_bitset_usage.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_usage.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/dynamic_bitset_usage.out.license b/test/snippet/utility/container/dynamic_bitset_usage.out.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/dynamic_bitset_usage.out.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/container/small_string.cpp b/test/snippet/utility/container/small_string.cpp index 8b9ad5bff5..8e14d1d3b3 100644 --- a/test/snippet/utility/container/small_string.cpp +++ b/test/snippet/utility/container/small_string.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/container/small_string.err.license b/test/snippet/utility/container/small_string.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/container/small_string.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/detail/ceil_log2.cpp b/test/snippet/utility/detail/ceil_log2.cpp index a069aac3a3..65edf12857 100644 --- a/test/snippet/utility/detail/ceil_log2.cpp +++ b/test/snippet/utility/detail/ceil_log2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/detail/ceil_log2.err.license b/test/snippet/utility/detail/ceil_log2.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/detail/ceil_log2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/detail/floor_log2.cpp b/test/snippet/utility/detail/floor_log2.cpp index 5546dcfdca..26ae4ef2d7 100644 --- a/test/snippet/utility/detail/floor_log2.cpp +++ b/test/snippet/utility/detail/floor_log2.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/detail/floor_log2.err.license b/test/snippet/utility/detail/floor_log2.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/detail/floor_log2.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/pow.cpp b/test/snippet/utility/pow.cpp index 155cf5be5b..3de6335ac7 100644 --- a/test/snippet/utility/pow.cpp +++ b/test/snippet/utility/pow.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/pow.err.license b/test/snippet/utility/pow.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/pow.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/detail/builtin_simd.cpp b/test/snippet/utility/simd/detail/builtin_simd.cpp index 4dbe625851..68eb4d0408 100644 --- a/test/snippet/utility/simd/detail/builtin_simd.cpp +++ b/test/snippet/utility/simd/detail/builtin_simd.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // 8x 16bit integers = 128bit diff --git a/test/snippet/utility/simd/detail/default_simd_max_length.cpp b/test/snippet/utility/simd/detail/default_simd_max_length.cpp index 1ba30c1489..cfa1fdc566 100644 --- a/test/snippet/utility/simd/detail/default_simd_max_length.cpp +++ b/test/snippet/utility/simd/detail/default_simd_max_length.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/simd/detail/default_simd_max_length.err.license b/test/snippet/utility/simd/detail/default_simd_max_length.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/detail/default_simd_max_length.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/detail/is_builtin_simd.cpp b/test/snippet/utility/simd/detail/is_builtin_simd.cpp index f9c47cd516..be0f4f91a5 100644 --- a/test/snippet/utility/simd/detail/is_builtin_simd.cpp +++ b/test/snippet/utility/simd/detail/is_builtin_simd.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include using int8x16_t = seqan3::detail::builtin_simd::type; diff --git a/test/snippet/utility/simd/fill.cpp b/test/snippet/utility/simd/fill.cpp index bdedcba6dd..a5cca15039 100644 --- a/test/snippet/utility/simd/fill.cpp +++ b/test/snippet/utility/simd/fill.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/simd/fill.err.license b/test/snippet/utility/simd/fill.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/fill.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/iota.cpp b/test/snippet/utility/simd/iota.cpp index 6160fb0971..d983e2eab7 100644 --- a/test/snippet/utility/simd/iota.cpp +++ b/test/snippet/utility/simd/iota.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/simd/iota.err.license b/test/snippet/utility/simd/iota.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/iota.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/simd.cpp b/test/snippet/utility/simd/simd.cpp index c24df43c5d..0cceccf574 100644 --- a/test/snippet/utility/simd/simd.cpp +++ b/test/snippet/utility/simd/simd.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/simd/simd.err.license b/test/snippet/utility/simd/simd.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/simd.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/simd_extract.cpp b/test/snippet/utility/simd/simd_extract.cpp index 015114d58c..c3e7cb4a88 100644 --- a/test/snippet/utility/simd/simd_extract.cpp +++ b/test/snippet/utility/simd/simd_extract.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/simd/simd_extract.err.license b/test/snippet/utility/simd/simd_extract.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/simd_extract.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/simd_load.cpp b/test/snippet/utility/simd/simd_load.cpp index 5436af7da6..55efc75a4e 100644 --- a/test/snippet/utility/simd/simd_load.cpp +++ b/test/snippet/utility/simd/simd_load.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/simd/simd_load.err.license b/test/snippet/utility/simd/simd_load.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/simd_load.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/simd_store.cpp b/test/snippet/utility/simd/simd_store.cpp index 4575004023..ba851f27f5 100644 --- a/test/snippet/utility/simd/simd_store.cpp +++ b/test/snippet/utility/simd/simd_store.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/simd/simd_store.err.license b/test/snippet/utility/simd/simd_store.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/simd_store.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/simd_traits.cpp b/test/snippet/utility/simd/simd_traits.cpp index f6fa421156..5166b182f7 100644 --- a/test/snippet/utility/simd/simd_traits.cpp +++ b/test/snippet/utility/simd/simd_traits.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include using uint16x8_t = seqan3::simd::simd_type_t; diff --git a/test/snippet/utility/simd/simd_transpose.cpp b/test/snippet/utility/simd/simd_transpose.cpp index 452d8e46c4..98c8d8ba6a 100644 --- a/test/snippet/utility/simd/simd_transpose.cpp +++ b/test/snippet/utility/simd/simd_transpose.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/simd/simd_transpose.err.license b/test/snippet/utility/simd/simd_transpose.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/simd_transpose.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/simd_upcast.cpp b/test/snippet/utility/simd/simd_upcast.cpp index 7bd726befe..7b6b1ea641 100644 --- a/test/snippet/utility/simd/simd_upcast.cpp +++ b/test/snippet/utility/simd/simd_upcast.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/simd/simd_upcast.err.license b/test/snippet/utility/simd/simd_upcast.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/simd_upcast.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/views/iota_simd.cpp b/test/snippet/utility/simd/views/iota_simd.cpp index 03b221e763..4840ae7ebb 100644 --- a/test/snippet/utility/simd/views/iota_simd.cpp +++ b/test/snippet/utility/simd/views/iota_simd.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/simd/views/iota_simd.err.license b/test/snippet/utility/simd/views/iota_simd.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/views/iota_simd.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/views/iota_simd_transform.cpp b/test/snippet/utility/simd/views/iota_simd_transform.cpp index aecfa33601..2d9ae351f9 100644 --- a/test/snippet/utility/simd/views/iota_simd_transform.cpp +++ b/test/snippet/utility/simd/views/iota_simd_transform.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include @@ -9,7 +13,7 @@ using uint16x8_t = seqan3::simd_type_t; int main() { - // Generate ascending simd index using a iota view in combination with a transfor view. + // Generate ascending simd index using a iota view in combination with a transform view. auto simd_iota_view = std::views::iota(0, 10) | std::views::transform( [](uint16_t const idx) diff --git a/test/snippet/utility/simd/views/iota_simd_transform.err.license b/test/snippet/utility/simd/views/iota_simd_transform.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/views/iota_simd_transform.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/simd/views/to_simd.cpp b/test/snippet/utility/simd/views/to_simd.cpp index 2a861e7b92..722e1a9b0e 100644 --- a/test/snippet/utility/simd/views/to_simd.cpp +++ b/test/snippet/utility/simd/views/to_simd.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/simd/views/to_simd.err.license b/test/snippet/utility/simd/views/to_simd.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/simd/views/to_simd.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/tuple/pod_tuple.cpp b/test/snippet/utility/tuple/pod_tuple.cpp index d388997067..dde98c8b32 100644 --- a/test/snippet/utility/tuple/pod_tuple.cpp +++ b/test/snippet/utility/tuple/pod_tuple.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/tuple/pod_tuple.err.license b/test/snippet/utility/tuple/pod_tuple.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/tuple/pod_tuple.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/tuple_utility.cpp b/test/snippet/utility/tuple_utility.cpp index 91dbe8f0cc..c630c0ed23 100644 --- a/test/snippet/utility/tuple_utility.cpp +++ b/test/snippet/utility/tuple_utility.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/detail/type_list_algorithm_all_of.cpp b/test/snippet/utility/type_list/detail/type_list_algorithm_all_of.cpp index 415ea98c58..e76d6a86cd 100644 --- a/test/snippet/utility/type_list/detail/type_list_algorithm_all_of.cpp +++ b/test/snippet/utility/type_list/detail/type_list_algorithm_all_of.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include @@ -33,5 +37,5 @@ auto fn = [](auto id) return false; }; -static_assert(seqan3::detail::all_of>(fn)); // evalates to true -static_assert(!seqan3::detail::all_of>(fn)); // evalates to false +static_assert(seqan3::detail::all_of>(fn)); // evaluates to true +static_assert(!seqan3::detail::all_of>(fn)); // evaluates to false diff --git a/test/snippet/utility/type_list/detail/type_list_algorithm_for_each.cpp b/test/snippet/utility/type_list/detail/type_list_algorithm_for_each.cpp index da870e82c2..4e2f3a1490 100644 --- a/test/snippet/utility/type_list/detail/type_list_algorithm_for_each.cpp +++ b/test/snippet/utility/type_list/detail/type_list_algorithm_for_each.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/type_list/detail/type_list_algorithm_for_each.err.license b/test/snippet/utility/type_list/detail/type_list_algorithm_for_each.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/type_list/detail/type_list_algorithm_for_each.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/type_list/list_traits_at.cpp b/test/snippet/utility/type_list/list_traits_at.cpp index 9af4e3a4cb..41ae477767 100644 --- a/test/snippet/utility/type_list/list_traits_at.cpp +++ b/test/snippet/utility/type_list/list_traits_at.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_back.cpp b/test/snippet/utility/type_list/list_traits_back.cpp index 705bb97254..4d24c2dc69 100644 --- a/test/snippet/utility/type_list/list_traits_back.cpp +++ b/test/snippet/utility/type_list/list_traits_back.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_concat.cpp b/test/snippet/utility/type_list/list_traits_concat.cpp index 049ed9f4ea..356f81d7c9 100644 --- a/test/snippet/utility/type_list/list_traits_concat.cpp +++ b/test/snippet/utility/type_list/list_traits_concat.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_contains.cpp b/test/snippet/utility/type_list/list_traits_contains.cpp index 924288e803..aae823222f 100644 --- a/test/snippet/utility/type_list/list_traits_contains.cpp +++ b/test/snippet/utility/type_list/list_traits_contains.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_count.cpp b/test/snippet/utility/type_list/list_traits_count.cpp index 40c79ace09..021f698153 100644 --- a/test/snippet/utility/type_list/list_traits_count.cpp +++ b/test/snippet/utility/type_list/list_traits_count.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_drop.cpp b/test/snippet/utility/type_list/list_traits_drop.cpp index 20e824ffbc..93130f87b2 100644 --- a/test/snippet/utility/type_list/list_traits_drop.cpp +++ b/test/snippet/utility/type_list/list_traits_drop.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_drop_front.cpp b/test/snippet/utility/type_list/list_traits_drop_front.cpp index 0d1b09b0b3..608e51639f 100644 --- a/test/snippet/utility/type_list/list_traits_drop_front.cpp +++ b/test/snippet/utility/type_list/list_traits_drop_front.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_drop_last.cpp b/test/snippet/utility/type_list/list_traits_drop_last.cpp index 4a607cc5fc..04c40645a6 100644 --- a/test/snippet/utility/type_list/list_traits_drop_last.cpp +++ b/test/snippet/utility/type_list/list_traits_drop_last.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_find.cpp b/test/snippet/utility/type_list/list_traits_find.cpp index 01fee8e67f..7ce5f11814 100644 --- a/test/snippet/utility/type_list/list_traits_find.cpp +++ b/test/snippet/utility/type_list/list_traits_find.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_find_if.cpp b/test/snippet/utility/type_list/list_traits_find_if.cpp index 1b32896ea3..cb3871cc42 100644 --- a/test/snippet/utility/type_list/list_traits_find_if.cpp +++ b/test/snippet/utility/type_list/list_traits_find_if.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_front.cpp b/test/snippet/utility/type_list/list_traits_front.cpp index 8de3ff5970..b3d47b66c3 100644 --- a/test/snippet/utility/type_list/list_traits_front.cpp +++ b/test/snippet/utility/type_list/list_traits_front.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_replace_at.cpp b/test/snippet/utility/type_list/list_traits_replace_at.cpp index d000189756..3f0aa7a2e6 100644 --- a/test/snippet/utility/type_list/list_traits_replace_at.cpp +++ b/test/snippet/utility/type_list/list_traits_replace_at.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_size.cpp b/test/snippet/utility/type_list/list_traits_size.cpp index ab82d691b7..0fa292c00c 100644 --- a/test/snippet/utility/type_list/list_traits_size.cpp +++ b/test/snippet/utility/type_list/list_traits_size.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_split_after.cpp b/test/snippet/utility/type_list/list_traits_split_after.cpp index 543d4af1ff..f4ae1e919c 100644 --- a/test/snippet/utility/type_list/list_traits_split_after.cpp +++ b/test/snippet/utility/type_list/list_traits_split_after.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_take.cpp b/test/snippet/utility/type_list/list_traits_take.cpp index 774cfb12a4..b9f7a50e0e 100644 --- a/test/snippet/utility/type_list/list_traits_take.cpp +++ b/test/snippet/utility/type_list/list_traits_take.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_take_last.cpp b/test/snippet/utility/type_list/list_traits_take_last.cpp index 707841d8d3..21f2393ec5 100644 --- a/test/snippet/utility/type_list/list_traits_take_last.cpp +++ b/test/snippet/utility/type_list/list_traits_take_last.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_list/list_traits_transform.cpp b/test/snippet/utility/type_list/list_traits_transform.cpp index db7b8c9fc5..e6e816f8e8 100644 --- a/test/snippet/utility/type_list/list_traits_transform.cpp +++ b/test/snippet/utility/type_list/list_traits_transform.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/type_pack/detail/type_pack_algorithm_all_of.cpp b/test/snippet/utility/type_pack/detail/type_pack_algorithm_all_of.cpp index 8f2ad2aef4..2508f60532 100644 --- a/test/snippet/utility/type_pack/detail/type_pack_algorithm_all_of.cpp +++ b/test/snippet/utility/type_pack/detail/type_pack_algorithm_all_of.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include @@ -22,5 +26,5 @@ auto fn = [](auto value) return false; }; -static_assert(seqan3::detail::all_of(fn, 3, 1.2, false)); // evalates to true -static_assert(!seqan3::detail::all_of(fn, 3, 1.2, false, "something else")); // evalates to false +static_assert(seqan3::detail::all_of(fn, 3, 1.2, false)); // evaluates to true +static_assert(!seqan3::detail::all_of(fn, 3, 1.2, false, "something else")); // evaluates to false diff --git a/test/snippet/utility/type_pack/detail/type_pack_algorithm_for_each.cpp b/test/snippet/utility/type_pack/detail/type_pack_algorithm_for_each.cpp index db139c28eb..70a161bdc3 100644 --- a/test/snippet/utility/type_pack/detail/type_pack_algorithm_for_each.cpp +++ b/test/snippet/utility/type_pack/detail/type_pack_algorithm_for_each.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/type_pack/detail/type_pack_algorithm_for_each.err.license b/test/snippet/utility/type_pack/detail/type_pack_algorithm_for_each.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/type_pack/detail/type_pack_algorithm_for_each.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/type_pack/pack_traits_at.cpp b/test/snippet/utility/type_pack/pack_traits_at.cpp index c3df38f8bd..823fc3013e 100644 --- a/test/snippet/utility/type_pack/pack_traits_at.cpp +++ b/test/snippet/utility/type_pack/pack_traits_at.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_back.cpp b/test/snippet/utility/type_pack/pack_traits_back.cpp index 0452cf4d5b..45f3917e0a 100644 --- a/test/snippet/utility/type_pack/pack_traits_back.cpp +++ b/test/snippet/utility/type_pack/pack_traits_back.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_count.cpp b/test/snippet/utility/type_pack/pack_traits_count.cpp index 7c47f84470..eead1e57a8 100644 --- a/test/snippet/utility/type_pack/pack_traits_count.cpp +++ b/test/snippet/utility/type_pack/pack_traits_count.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_drop.cpp b/test/snippet/utility/type_pack/pack_traits_drop.cpp index a4f920b932..06ffb6ff32 100644 --- a/test/snippet/utility/type_pack/pack_traits_drop.cpp +++ b/test/snippet/utility/type_pack/pack_traits_drop.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_drop_front.cpp b/test/snippet/utility/type_pack/pack_traits_drop_front.cpp index dbfb5ce98d..ca32e72a9e 100644 --- a/test/snippet/utility/type_pack/pack_traits_drop_front.cpp +++ b/test/snippet/utility/type_pack/pack_traits_drop_front.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_drop_last.cpp b/test/snippet/utility/type_pack/pack_traits_drop_last.cpp index fd38e185dc..c7bd42ceda 100644 --- a/test/snippet/utility/type_pack/pack_traits_drop_last.cpp +++ b/test/snippet/utility/type_pack/pack_traits_drop_last.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_find.cpp b/test/snippet/utility/type_pack/pack_traits_find.cpp index 64794d3546..14d9404045 100644 --- a/test/snippet/utility/type_pack/pack_traits_find.cpp +++ b/test/snippet/utility/type_pack/pack_traits_find.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_find_if.cpp b/test/snippet/utility/type_pack/pack_traits_find_if.cpp index fe7ea70019..5104feed99 100644 --- a/test/snippet/utility/type_pack/pack_traits_find_if.cpp +++ b/test/snippet/utility/type_pack/pack_traits_find_if.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_front.cpp b/test/snippet/utility/type_pack/pack_traits_front.cpp index 05af856860..b4f0a42686 100644 --- a/test/snippet/utility/type_pack/pack_traits_front.cpp +++ b/test/snippet/utility/type_pack/pack_traits_front.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_replace_at.cpp b/test/snippet/utility/type_pack/pack_traits_replace_at.cpp index 3897983b5f..0d891fcf55 100644 --- a/test/snippet/utility/type_pack/pack_traits_replace_at.cpp +++ b/test/snippet/utility/type_pack/pack_traits_replace_at.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_size.cpp b/test/snippet/utility/type_pack/pack_traits_size.cpp index 55e2f12ce0..0e0e59de31 100644 --- a/test/snippet/utility/type_pack/pack_traits_size.cpp +++ b/test/snippet/utility/type_pack/pack_traits_size.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_split_after.cpp b/test/snippet/utility/type_pack/pack_traits_split_after.cpp index aafb49e602..a6fc1cbd84 100644 --- a/test/snippet/utility/type_pack/pack_traits_split_after.cpp +++ b/test/snippet/utility/type_pack/pack_traits_split_after.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_take.cpp b/test/snippet/utility/type_pack/pack_traits_take.cpp index 6580582fc3..971b8be49b 100644 --- a/test/snippet/utility/type_pack/pack_traits_take.cpp +++ b/test/snippet/utility/type_pack/pack_traits_take.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_take_last.cpp b/test/snippet/utility/type_pack/pack_traits_take_last.cpp index b6f4035553..f4a0b064be 100644 --- a/test/snippet/utility/type_pack/pack_traits_take_last.cpp +++ b/test/snippet/utility/type_pack/pack_traits_take_last.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include int main() diff --git a/test/snippet/utility/type_pack/pack_traits_transform.cpp b/test/snippet/utility/type_pack/pack_traits_transform.cpp index 67d3d40c77..fe50fddab4 100644 --- a/test/snippet/utility/type_pack/pack_traits_transform.cpp +++ b/test/snippet/utility/type_pack/pack_traits_transform.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/type_traits/function_traits.cpp b/test/snippet/utility/type_traits/function_traits.cpp index 9f8e9c5fd0..005f44e9dd 100644 --- a/test/snippet/utility/type_traits/function_traits.cpp +++ b/test/snippet/utility/type_traits/function_traits.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/type_traits/lazy_conditional.cpp b/test/snippet/utility/type_traits/lazy_conditional.cpp index 8fc5a98d4f..ed06dfdd49 100644 --- a/test/snippet/utility/type_traits/lazy_conditional.cpp +++ b/test/snippet/utility/type_traits/lazy_conditional.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wunused-parameter" #pragma GCC diagnostic ignored "-Wunused-local-typedefs" diff --git a/test/snippet/utility/type_traits/transformation_trait_or.cpp b/test/snippet/utility/type_traits/transformation_trait_or.cpp index ea88504229..14f57c209c 100644 --- a/test/snippet/utility/type_traits/transformation_trait_or.cpp +++ b/test/snippet/utility/type_traits/transformation_trait_or.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include template diff --git a/test/snippet/utility/views/chunk.cpp b/test/snippet/utility/views/chunk.cpp index fb395b5573..6d4f5773ff 100644 --- a/test/snippet/utility/views/chunk.cpp +++ b/test/snippet/utility/views/chunk.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/chunk.err.license b/test/snippet/utility/views/chunk.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/chunk.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/convert_15_to_5.cpp b/test/snippet/utility/views/convert_15_to_5.cpp index 1053b10bbd..b4c2c67ab2 100644 --- a/test/snippet/utility/views/convert_15_to_5.cpp +++ b/test/snippet/utility/views/convert_15_to_5.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include #include diff --git a/test/snippet/utility/views/convert_15_to_5.err.license b/test/snippet/utility/views/convert_15_to_5.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/convert_15_to_5.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/convert_int_to_bool.cpp b/test/snippet/utility/views/convert_int_to_bool.cpp index 47c6f1f2f5..589bcd579f 100644 --- a/test/snippet/utility/views/convert_int_to_bool.cpp +++ b/test/snippet/utility/views/convert_int_to_bool.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/convert_int_to_bool.err.license b/test/snippet/utility/views/convert_int_to_bool.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/convert_int_to_bool.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/deep_no_param.cpp b/test/snippet/utility/views/deep_no_param.cpp index 73a9ce521d..c7f72fbe67 100644 --- a/test/snippet/utility/views/deep_no_param.cpp +++ b/test/snippet/utility/views/deep_no_param.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/deep_no_param.err.license b/test/snippet/utility/views/deep_no_param.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/deep_no_param.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/deep_pass_ref.cpp b/test/snippet/utility/views/deep_pass_ref.cpp index 9ba586be94..55f9dcec74 100644 --- a/test/snippet/utility/views/deep_pass_ref.cpp +++ b/test/snippet/utility/views/deep_pass_ref.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/deep_pass_ref.err.license b/test/snippet/utility/views/deep_pass_ref.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/deep_pass_ref.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/deep_with_param.cpp b/test/snippet/utility/views/deep_with_param.cpp index 8bbc0a62a8..e2ac306d3b 100644 --- a/test/snippet/utility/views/deep_with_param.cpp +++ b/test/snippet/utility/views/deep_with_param.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/deep_with_param.err.license b/test/snippet/utility/views/deep_with_param.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/deep_with_param.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/deep_wrap_args.cpp b/test/snippet/utility/views/deep_wrap_args.cpp index 59328afe56..40b2887014 100644 --- a/test/snippet/utility/views/deep_wrap_args.cpp +++ b/test/snippet/utility/views/deep_wrap_args.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/deep_wrap_args.err.license b/test/snippet/utility/views/deep_wrap_args.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/deep_wrap_args.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/elements.cpp b/test/snippet/utility/views/elements.cpp index 2df380fca9..31dd4e24ad 100644 --- a/test/snippet/utility/views/elements.cpp +++ b/test/snippet/utility/views/elements.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/elements.err.license b/test/snippet/utility/views/elements.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/elements.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/enforce_random_access.cpp b/test/snippet/utility/views/enforce_random_access.cpp index b32afc81f2..98fb191243 100644 --- a/test/snippet/utility/views/enforce_random_access.cpp +++ b/test/snippet/utility/views/enforce_random_access.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include @@ -13,7 +17,7 @@ int main() auto seq = "ACGTACGACT"_dna4; seqan3::gap_decorator aligned_seq{seq}; - // It does not fulfil random access semantics because it does not allow constant time access to aribtrary + // It does not fulfill random access semantics because it does not allow constant time access to arbitrary // elements in the range. Thus, it is only a bidirectional range by default. static_assert(std::ranges::bidirectional_range); static_assert(!std::ranges::random_access_range); diff --git a/test/snippet/utility/views/enforce_random_access.err.license b/test/snippet/utility/views/enforce_random_access.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/enforce_random_access.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/interleave.cpp b/test/snippet/utility/views/interleave.cpp index fdbbbab950..fe45ac2d51 100644 --- a/test/snippet/utility/views/interleave.cpp +++ b/test/snippet/utility/views/interleave.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/interleave.err.license b/test/snippet/utility/views/interleave.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/interleave.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/pairwise_combine.cpp b/test/snippet/utility/views/pairwise_combine.cpp index 42e98e7a85..e1f35927c4 100644 --- a/test/snippet/utility/views/pairwise_combine.cpp +++ b/test/snippet/utility/views/pairwise_combine.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/pairwise_combine.err.license b/test/snippet/utility/views/pairwise_combine.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/pairwise_combine.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/repeat.cpp b/test/snippet/utility/views/repeat.cpp index fb72b9976a..db98e26588 100644 --- a/test/snippet/utility/views/repeat.cpp +++ b/test/snippet/utility/views/repeat.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/repeat.err.license b/test/snippet/utility/views/repeat.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/repeat.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/repeat_n.cpp b/test/snippet/utility/views/repeat_n.cpp index a1b9015670..fdd584fadc 100644 --- a/test/snippet/utility/views/repeat_n.cpp +++ b/test/snippet/utility/views/repeat_n.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/repeat_n.err.license b/test/snippet/utility/views/repeat_n.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/repeat_n.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/single_pass_input.cpp b/test/snippet/utility/views/single_pass_input.cpp index d156c2442a..1110454e0b 100644 --- a/test/snippet/utility/views/single_pass_input.cpp +++ b/test/snippet/utility/views/single_pass_input.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/single_pass_input.err.license b/test/snippet/utility/views/single_pass_input.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/single_pass_input.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/slice.cpp b/test/snippet/utility/views/slice.cpp index 88810cb0bd..f8f1621fa5 100644 --- a/test/snippet/utility/views/slice.cpp +++ b/test/snippet/utility/views/slice.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include // provides std::views::reverse #include diff --git a/test/snippet/utility/views/slice.err.license b/test/snippet/utility/views/slice.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/slice.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/snippet/utility/views/type_reduce.cpp b/test/snippet/utility/views/type_reduce.cpp index 43dc300f1a..f1f6219159 100644 --- a/test/snippet/utility/views/type_reduce.cpp +++ b/test/snippet/utility/views/type_reduce.cpp @@ -1,3 +1,7 @@ +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: CC0-1.0 + #include #include diff --git a/test/snippet/utility/views/type_reduce.err.license b/test/snippet/utility/views/type_reduce.err.license new file mode 100644 index 0000000000..b8b3e60969 --- /dev/null +++ b/test/snippet/utility/views/type_reduce.err.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC0-1.0 diff --git a/test/unit/CMakeLists.txt b/test/unit/CMakeLists.txt index 058cc239da..a670271aa9 100644 --- a/test/unit/CMakeLists.txt +++ b/test/unit/CMakeLists.txt @@ -1,9 +1,6 @@ -# ----------------------------------------------------------------------------------------------------- -# Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -# Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -# This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -# shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -# ----------------------------------------------------------------------------------------------------- +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: BSD-3-Clause cmake_minimum_required (VERSION 3.10...3.22) project (seqan3_test_unit CXX) diff --git a/test/unit/alignment/CMakeLists.txt b/test/unit/alignment/CMakeLists.txt index 2306fd6805..5ab1e8289f 100644 --- a/test/unit/alignment/CMakeLists.txt +++ b/test/unit/alignment/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (aligned_sequence_test.cpp) seqan3_test (exception_test.cpp) diff --git a/test/unit/alignment/aligned_sequence/CMakeLists.txt b/test/unit/alignment/aligned_sequence/CMakeLists.txt index c648d6e8d0..bb8b3d077a 100644 --- a/test/unit/alignment/aligned_sequence/CMakeLists.txt +++ b/test/unit/alignment/aligned_sequence/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (debug_stream_alignment_test.cpp) diff --git a/test/unit/alignment/aligned_sequence/debug_stream_alignment_test.cpp b/test/unit/alignment/aligned_sequence/debug_stream_alignment_test.cpp index 253ade558c..a54bc77a35 100644 --- a/test/unit/alignment/aligned_sequence/debug_stream_alignment_test.cpp +++ b/test/unit/alignment/aligned_sequence/debug_stream_alignment_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/aligned_sequence_test.cpp b/test/unit/alignment/aligned_sequence_test.cpp index 42389813a4..84e3a314e2 100644 --- a/test/unit/alignment/aligned_sequence_test.cpp +++ b/test/unit/alignment/aligned_sequence_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/aligned_sequence_test_template.hpp b/test/unit/alignment/aligned_sequence_test_template.hpp index 060536ce59..eec935ede4 100644 --- a/test/unit/alignment/aligned_sequence_test_template.hpp +++ b/test/unit/alignment/aligned_sequence_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/cigar_conversion/CMakeLists.txt b/test/unit/alignment/cigar_conversion/CMakeLists.txt index 36a289d28c..8f968e432b 100644 --- a/test/unit/alignment/cigar_conversion/CMakeLists.txt +++ b/test/unit/alignment/cigar_conversion/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (alignment_from_cigar_test.cpp) seqan3_test (cigar_from_alignment_test.cpp) diff --git a/test/unit/alignment/cigar_conversion/alignment_from_cigar_test.cpp b/test/unit/alignment/cigar_conversion/alignment_from_cigar_test.cpp index d6d36927f3..ddaabc4c62 100644 --- a/test/unit/alignment/cigar_conversion/alignment_from_cigar_test.cpp +++ b/test/unit/alignment/cigar_conversion/alignment_from_cigar_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/cigar_conversion/cigar_from_alignment_test.cpp b/test/unit/alignment/cigar_conversion/cigar_from_alignment_test.cpp index 5f006841b0..f1ca69d1bb 100644 --- a/test/unit/alignment/cigar_conversion/cigar_from_alignment_test.cpp +++ b/test/unit/alignment/cigar_conversion/cigar_from_alignment_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/CMakeLists.txt b/test/unit/alignment/configuration/CMakeLists.txt index 2107c05e7b..f902384d0d 100644 --- a/test/unit/alignment/configuration/CMakeLists.txt +++ b/test/unit/alignment/configuration/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (align_config_band_test.cpp) seqan3_test (align_config_common_test.cpp) seqan3_test (align_config_edit_test.cpp) diff --git a/test/unit/alignment/configuration/align_config_band_test.cpp b/test/unit/alignment/configuration/align_config_band_test.cpp index 8bbe82b77a..cbe2ed74c3 100644 --- a/test/unit/alignment/configuration/align_config_band_test.cpp +++ b/test/unit/alignment/configuration/align_config_band_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_common_test.cpp b/test/unit/alignment/configuration/align_config_common_test.cpp index d9dd6fb15e..4287355d1c 100644 --- a/test/unit/alignment/configuration/align_config_common_test.cpp +++ b/test/unit/alignment/configuration/align_config_common_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_edit_test.cpp b/test/unit/alignment/configuration/align_config_edit_test.cpp index 7ec211537a..b0e3636920 100644 --- a/test/unit/alignment/configuration/align_config_edit_test.cpp +++ b/test/unit/alignment/configuration/align_config_edit_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_gap_cost_affine_test.cpp b/test/unit/alignment/configuration/align_config_gap_cost_affine_test.cpp index 8a4c40c1dc..44ffe14c4b 100644 --- a/test/unit/alignment/configuration/align_config_gap_cost_affine_test.cpp +++ b/test/unit/alignment/configuration/align_config_gap_cost_affine_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_method_test.cpp b/test/unit/alignment/configuration/align_config_method_test.cpp index 2e6ae231d5..d2d2adba50 100644 --- a/test/unit/alignment/configuration/align_config_method_test.cpp +++ b/test/unit/alignment/configuration/align_config_method_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_min_score_test.cpp b/test/unit/alignment/configuration/align_config_min_score_test.cpp index 6b5cb54a96..691a002e02 100644 --- a/test/unit/alignment/configuration/align_config_min_score_test.cpp +++ b/test/unit/alignment/configuration/align_config_min_score_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_on_result_test.cpp b/test/unit/alignment/configuration/align_config_on_result_test.cpp index 36f7bb9d8c..e8328b27c0 100644 --- a/test/unit/alignment/configuration/align_config_on_result_test.cpp +++ b/test/unit/alignment/configuration/align_config_on_result_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_output_test.cpp b/test/unit/alignment/configuration/align_config_output_test.cpp index 46c3539ada..0e5dd867c8 100644 --- a/test/unit/alignment/configuration/align_config_output_test.cpp +++ b/test/unit/alignment/configuration/align_config_output_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_parallel_test.cpp b/test/unit/alignment/configuration/align_config_parallel_test.cpp index 931ced6a6b..44eb42a4c6 100644 --- a/test/unit/alignment/configuration/align_config_parallel_test.cpp +++ b/test/unit/alignment/configuration/align_config_parallel_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_score_type_test.cpp b/test/unit/alignment/configuration/align_config_score_type_test.cpp index d33631991f..7b441c13fa 100644 --- a/test/unit/alignment/configuration/align_config_score_type_test.cpp +++ b/test/unit/alignment/configuration/align_config_score_type_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_scoring_scheme_test.cpp b/test/unit/alignment/configuration/align_config_scoring_scheme_test.cpp index 5aa7ff8481..1d8bc6abf1 100644 --- a/test/unit/alignment/configuration/align_config_scoring_scheme_test.cpp +++ b/test/unit/alignment/configuration/align_config_scoring_scheme_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/configuration/align_config_vectorised_test.cpp b/test/unit/alignment/configuration/align_config_vectorised_test.cpp index c18809e925..8fa9d6124c 100644 --- a/test/unit/alignment/configuration/align_config_vectorised_test.cpp +++ b/test/unit/alignment/configuration/align_config_vectorised_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/decorator/CMakeLists.txt b/test/unit/alignment/decorator/CMakeLists.txt index c32b23a63b..7934ddeb3d 100644 --- a/test/unit/alignment/decorator/CMakeLists.txt +++ b/test/unit/alignment/decorator/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (gap_decorator_test.cpp) diff --git a/test/unit/alignment/decorator/gap_decorator_test.cpp b/test/unit/alignment/decorator/gap_decorator_test.cpp index 74f3e8adfe..7116e2776f 100644 --- a/test/unit/alignment/decorator/gap_decorator_test.cpp +++ b/test/unit/alignment/decorator/gap_decorator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/detail/CMakeLists.txt b/test/unit/alignment/detail/CMakeLists.txt index f5efabf9a1..c4c5df27d1 100644 --- a/test/unit/alignment/detail/CMakeLists.txt +++ b/test/unit/alignment/detail/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (pairwise_alignment_concept_test.cpp) diff --git a/test/unit/alignment/detail/pairwise_alignment_concept_test.cpp b/test/unit/alignment/detail/pairwise_alignment_concept_test.cpp index e6003cdf16..b16f4a3ee9 100644 --- a/test/unit/alignment/detail/pairwise_alignment_concept_test.cpp +++ b/test/unit/alignment/detail/pairwise_alignment_concept_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/exception_test.cpp b/test/unit/alignment/exception_test.cpp index 942790512f..1f44f0b2d8 100644 --- a/test/unit/alignment/exception_test.cpp +++ b/test/unit/alignment/exception_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/CMakeLists.txt b/test/unit/alignment/matrix/CMakeLists.txt index 9ddf96d30c..eb99a605f5 100644 --- a/test/unit/alignment/matrix/CMakeLists.txt +++ b/test/unit/alignment/matrix/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () diff --git a/test/unit/alignment/matrix/detail/CMakeLists.txt b/test/unit/alignment/matrix/detail/CMakeLists.txt index 5ffe3bf716..db66774352 100644 --- a/test/unit/alignment/matrix/detail/CMakeLists.txt +++ b/test/unit/alignment/matrix/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (advanceable_alignment_coordinate_test.cpp) seqan3_test (affine_cell_proxy_test.cpp) seqan3_test (aligned_sequence_builder_test.cpp) diff --git a/test/unit/alignment/matrix/detail/advanceable_alignment_coordinate_test.cpp b/test/unit/alignment/matrix/detail/advanceable_alignment_coordinate_test.cpp index 3f56ca8af1..33e445cfbd 100644 --- a/test/unit/alignment/matrix/detail/advanceable_alignment_coordinate_test.cpp +++ b/test/unit/alignment/matrix/detail/advanceable_alignment_coordinate_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/affine_cell_proxy_test.cpp b/test/unit/alignment/matrix/detail/affine_cell_proxy_test.cpp index 0839b0306b..7567582180 100644 --- a/test/unit/alignment/matrix/detail/affine_cell_proxy_test.cpp +++ b/test/unit/alignment/matrix/detail/affine_cell_proxy_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/aligned_sequence_builder_test.cpp b/test/unit/alignment/matrix/detail/aligned_sequence_builder_test.cpp index 97dde47a1e..f817e4fe7c 100644 --- a/test/unit/alignment/matrix/detail/aligned_sequence_builder_test.cpp +++ b/test/unit/alignment/matrix/detail/aligned_sequence_builder_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/alignment_matrix_base_test_template.hpp b/test/unit/alignment/matrix/detail/alignment_matrix_base_test_template.hpp index 0ea75f33d0..115fb4f923 100644 --- a/test/unit/alignment/matrix/detail/alignment_matrix_base_test_template.hpp +++ b/test/unit/alignment/matrix/detail/alignment_matrix_base_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/alignment_matrix_column_major_range_base_test.cpp b/test/unit/alignment/matrix/detail/alignment_matrix_column_major_range_base_test.cpp index 40b0ea7bfc..aa304c1240 100644 --- a/test/unit/alignment/matrix/detail/alignment_matrix_column_major_range_base_test.cpp +++ b/test/unit/alignment/matrix/detail/alignment_matrix_column_major_range_base_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/alignment_optimum_test.cpp b/test/unit/alignment/matrix/detail/alignment_optimum_test.cpp index 887ce71897..02c757d0d3 100644 --- a/test/unit/alignment/matrix/detail/alignment_optimum_test.cpp +++ b/test/unit/alignment/matrix/detail/alignment_optimum_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/alignment_score_matrix_one_column_banded_test.cpp b/test/unit/alignment/matrix/detail/alignment_score_matrix_one_column_banded_test.cpp index 16a8e2b868..34f1607a96 100644 --- a/test/unit/alignment/matrix/detail/alignment_score_matrix_one_column_banded_test.cpp +++ b/test/unit/alignment/matrix/detail/alignment_score_matrix_one_column_banded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/alignment_score_matrix_one_column_test.cpp b/test/unit/alignment/matrix/detail/alignment_score_matrix_one_column_test.cpp index d5a244067b..38a8401eea 100644 --- a/test/unit/alignment/matrix/detail/alignment_score_matrix_one_column_test.cpp +++ b/test/unit/alignment/matrix/detail/alignment_score_matrix_one_column_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/alignment_trace_matrix_full_banded_test.cpp b/test/unit/alignment/matrix/detail/alignment_trace_matrix_full_banded_test.cpp index b9acc56438..f8d6c791d1 100644 --- a/test/unit/alignment/matrix/detail/alignment_trace_matrix_full_banded_test.cpp +++ b/test/unit/alignment/matrix/detail/alignment_trace_matrix_full_banded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/alignment_trace_matrix_full_test.cpp b/test/unit/alignment/matrix/detail/alignment_trace_matrix_full_test.cpp index e1ac6c96e4..b99a81661f 100644 --- a/test/unit/alignment/matrix/detail/alignment_trace_matrix_full_test.cpp +++ b/test/unit/alignment/matrix/detail/alignment_trace_matrix_full_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/combined_score_and_trace_matrix_test.cpp b/test/unit/alignment/matrix/detail/combined_score_and_trace_matrix_test.cpp index d49cde539d..b3908e19c0 100644 --- a/test/unit/alignment/matrix/detail/combined_score_and_trace_matrix_test.cpp +++ b/test/unit/alignment/matrix/detail/combined_score_and_trace_matrix_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/coordinate_matrix_simd_test.cpp b/test/unit/alignment/matrix/detail/coordinate_matrix_simd_test.cpp index 7451f7f3bd..73311e62ff 100644 --- a/test/unit/alignment/matrix/detail/coordinate_matrix_simd_test.cpp +++ b/test/unit/alignment/matrix/detail/coordinate_matrix_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/coordinate_matrix_test.cpp b/test/unit/alignment/matrix/detail/coordinate_matrix_test.cpp index c195f0cdc4..b2a4082962 100644 --- a/test/unit/alignment/matrix/detail/coordinate_matrix_test.cpp +++ b/test/unit/alignment/matrix/detail/coordinate_matrix_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/debug_matrix_test.cpp b/test/unit/alignment/matrix/detail/debug_matrix_test.cpp index 14f901f4ef..97009c4235 100644 --- a/test/unit/alignment/matrix/detail/debug_matrix_test.cpp +++ b/test/unit/alignment/matrix/detail/debug_matrix_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/debug_stream_advanceable_alignment_coordinate_test.cpp b/test/unit/alignment/matrix/detail/debug_stream_advanceable_alignment_coordinate_test.cpp index 6e585d5b7b..58d0cf49f3 100644 --- a/test/unit/alignment/matrix/detail/debug_stream_advanceable_alignment_coordinate_test.cpp +++ b/test/unit/alignment/matrix/detail/debug_stream_advanceable_alignment_coordinate_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/debug_stream_debug_matrix_test.cpp b/test/unit/alignment/matrix/detail/debug_stream_debug_matrix_test.cpp index d56be6b038..225a3a295e 100644 --- a/test/unit/alignment/matrix/detail/debug_stream_debug_matrix_test.cpp +++ b/test/unit/alignment/matrix/detail/debug_stream_debug_matrix_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/debug_stream_trace_directions_test.cpp b/test/unit/alignment/matrix/detail/debug_stream_trace_directions_test.cpp index 5e62172062..450123675a 100644 --- a/test/unit/alignment/matrix/detail/debug_stream_trace_directions_test.cpp +++ b/test/unit/alignment/matrix/detail/debug_stream_trace_directions_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/score_matrix_single_column_simd_test.cpp b/test/unit/alignment/matrix/detail/score_matrix_single_column_simd_test.cpp index eeff2f194a..e3d685835f 100644 --- a/test/unit/alignment/matrix/detail/score_matrix_single_column_simd_test.cpp +++ b/test/unit/alignment/matrix/detail/score_matrix_single_column_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/score_matrix_single_column_test.cpp b/test/unit/alignment/matrix/detail/score_matrix_single_column_test.cpp index 9c1c1119a0..afb95fc390 100644 --- a/test/unit/alignment/matrix/detail/score_matrix_single_column_test.cpp +++ b/test/unit/alignment/matrix/detail/score_matrix_single_column_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/simulated_alignment_test_template.hpp b/test/unit/alignment/matrix/detail/simulated_alignment_test_template.hpp index bd68653d83..da6e977c84 100644 --- a/test/unit/alignment/matrix/detail/simulated_alignment_test_template.hpp +++ b/test/unit/alignment/matrix/detail/simulated_alignment_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/trace_iterator_banded_test.cpp b/test/unit/alignment/matrix/detail/trace_iterator_banded_test.cpp index cb90d3b17d..d409f9d99c 100644 --- a/test/unit/alignment/matrix/detail/trace_iterator_banded_test.cpp +++ b/test/unit/alignment/matrix/detail/trace_iterator_banded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/trace_iterator_test.cpp b/test/unit/alignment/matrix/detail/trace_iterator_test.cpp index 765c80888d..becb78278e 100644 --- a/test/unit/alignment/matrix/detail/trace_iterator_test.cpp +++ b/test/unit/alignment/matrix/detail/trace_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/trace_matrix_full_test.cpp b/test/unit/alignment/matrix/detail/trace_matrix_full_test.cpp index 07b29f41d1..21cd1da549 100644 --- a/test/unit/alignment/matrix/detail/trace_matrix_full_test.cpp +++ b/test/unit/alignment/matrix/detail/trace_matrix_full_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/detail/two_dimensional_matrix_test.cpp b/test/unit/alignment/matrix/detail/two_dimensional_matrix_test.cpp index f8836eb3fc..c37575d94c 100644 --- a/test/unit/alignment/matrix/detail/two_dimensional_matrix_test.cpp +++ b/test/unit/alignment/matrix/detail/two_dimensional_matrix_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/CMakeLists.txt b/test/unit/alignment/matrix/edit_distance_matrix/CMakeLists.txt index 7809ad7246..2bd9411d43 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/CMakeLists.txt +++ b/test/unit/alignment/matrix/edit_distance_matrix/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (score_matrix_unbanded_global_max_errors_test.cpp) seqan3_test (score_matrix_unbanded_global_test.cpp) seqan3_test (score_matrix_unbanded_semi_global_max_errors_test.cpp) diff --git a/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_score_matrix.hpp b/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_score_matrix.hpp index ebc439d634..6b12404edb 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_score_matrix.hpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_score_matrix.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_trace_matrix.hpp b/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_trace_matrix.hpp index 8226dfc5c7..30926beca5 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_trace_matrix.hpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_trace_matrix.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_max_errors_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_max_errors_test.cpp index 35d5f1580b..980d296426 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_max_errors_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_max_errors_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_test.cpp index 9b03563daa..a013d5dcbd 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_max_errors_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_max_errors_test.cpp index 88db980330..7bb85c78ef 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_max_errors_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_max_errors_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_test.cpp index 919ed03e76..8adb50dc87 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_vertical_score_mask_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_vertical_score_mask_test.cpp index c22c16d78b..ce1b360b3e 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_vertical_score_mask_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_vertical_score_mask_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_path_iterator_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_path_iterator_test.cpp index 4b0e6ef552..58b8ddbfb2 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_path_iterator_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_path_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_max_errors_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_max_errors_test.cpp index a97c1858d9..4c2cd48860 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_max_errors_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_max_errors_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_test.cpp index c1a121de20..58f3dacff4 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_max_errors_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_max_errors_test.cpp index e5a6a30da2..9712a4f4dc 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_max_errors_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_max_errors_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_test.cpp b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_test.cpp index e5d8f54c7d..4288d88757 100644 --- a/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_test.cpp +++ b/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/CMakeLists.txt b/test/unit/alignment/pairwise/CMakeLists.txt index 316654dc6e..a6e5307572 100644 --- a/test/unit/alignment/pairwise/CMakeLists.txt +++ b/test/unit/alignment/pairwise/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (align_pairwise_test.cpp) seqan3_test (alignment_result_debug_stream_test.cpp) seqan3_test (alignment_result_test.cpp) diff --git a/test/unit/alignment/pairwise/align_pairwise_test.cpp b/test/unit/alignment/pairwise/align_pairwise_test.cpp index dde5c12674..aa989c903e 100644 --- a/test/unit/alignment/pairwise/align_pairwise_test.cpp +++ b/test/unit/alignment/pairwise/align_pairwise_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/align_result_selector_test.cpp b/test/unit/alignment/pairwise/align_result_selector_test.cpp index f9ed6a9c70..948d6e0082 100644 --- a/test/unit/alignment/pairwise/align_result_selector_test.cpp +++ b/test/unit/alignment/pairwise/align_result_selector_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/alignment_configurator_test.cpp b/test/unit/alignment/pairwise/alignment_configurator_test.cpp index ae6ce39d3e..e74b556a84 100644 --- a/test/unit/alignment/pairwise/alignment_configurator_test.cpp +++ b/test/unit/alignment/pairwise/alignment_configurator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/alignment_result_debug_stream_test.cpp b/test/unit/alignment/pairwise/alignment_result_debug_stream_test.cpp index 3fa76f0c67..f486fed676 100644 --- a/test/unit/alignment/pairwise/alignment_result_debug_stream_test.cpp +++ b/test/unit/alignment/pairwise/alignment_result_debug_stream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/alignment_result_test.cpp b/test/unit/alignment/pairwise/alignment_result_test.cpp index 6c57b950c8..58c2af91b3 100644 --- a/test/unit/alignment/pairwise/alignment_result_test.cpp +++ b/test/unit/alignment/pairwise/alignment_result_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/detail/CMakeLists.txt b/test/unit/alignment/pairwise/detail/CMakeLists.txt index 65cdf3a516..46909338c9 100644 --- a/test/unit/alignment/pairwise/detail/CMakeLists.txt +++ b/test/unit/alignment/pairwise/detail/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (type_traits_test.cpp) diff --git a/test/unit/alignment/pairwise/detail/type_traits_test.cpp b/test/unit/alignment/pairwise/detail/type_traits_test.cpp index 903e8e046b..6ef8d2ad78 100644 --- a/test/unit/alignment/pairwise/detail/type_traits_test.cpp +++ b/test/unit/alignment/pairwise/detail/type_traits_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/edit_distance/CMakeLists.txt b/test/unit/alignment/pairwise/edit_distance/CMakeLists.txt index 4721d41199..e880150d81 100644 --- a/test/unit/alignment/pairwise/edit_distance/CMakeLists.txt +++ b/test/unit/alignment/pairwise/edit_distance/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (global_edit_distance_max_errors_unbanded_test.cpp) seqan3_test (global_edit_distance_unbanded_test.cpp) seqan3_test (proxy_reference_test.cpp) diff --git a/test/unit/alignment/pairwise/edit_distance/global_edit_distance_max_errors_unbanded_test.cpp b/test/unit/alignment/pairwise/edit_distance/global_edit_distance_max_errors_unbanded_test.cpp index 47ecfd0986..9957df1d7b 100644 --- a/test/unit/alignment/pairwise/edit_distance/global_edit_distance_max_errors_unbanded_test.cpp +++ b/test/unit/alignment/pairwise/edit_distance/global_edit_distance_max_errors_unbanded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include "../edit_distance_unbanded_test_template.hpp" #include "../fixture/global_edit_distance_max_errors_unbanded.hpp" diff --git a/test/unit/alignment/pairwise/edit_distance/global_edit_distance_unbanded_test.cpp b/test/unit/alignment/pairwise/edit_distance/global_edit_distance_unbanded_test.cpp index bdda215c09..a2772f5732 100644 --- a/test/unit/alignment/pairwise/edit_distance/global_edit_distance_unbanded_test.cpp +++ b/test/unit/alignment/pairwise/edit_distance/global_edit_distance_unbanded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include "../edit_distance_unbanded_test_template.hpp" #include "../fixture/global_edit_distance_unbanded.hpp" diff --git a/test/unit/alignment/pairwise/edit_distance/proxy_reference_test.cpp b/test/unit/alignment/pairwise/edit_distance/proxy_reference_test.cpp index 22b689731a..bba5e7588e 100644 --- a/test/unit/alignment/pairwise/edit_distance/proxy_reference_test.cpp +++ b/test/unit/alignment/pairwise/edit_distance/proxy_reference_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_max_errors_unbanded_test.cpp b/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_max_errors_unbanded_test.cpp index 49a337e0f4..50a867b8ef 100644 --- a/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_max_errors_unbanded_test.cpp +++ b/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_max_errors_unbanded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include "../edit_distance_unbanded_test_template.hpp" #include "../fixture/semi_global_edit_distance_max_errors_unbanded.hpp" diff --git a/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_unbanded_test.cpp b/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_unbanded_test.cpp index 12e07ea3c2..6b29d7cb43 100644 --- a/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_unbanded_test.cpp +++ b/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_unbanded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include "../edit_distance_unbanded_test_template.hpp" #include "../fixture/semi_global_edit_distance_unbanded.hpp" diff --git a/test/unit/alignment/pairwise/edit_distance_unbanded_test_template.hpp b/test/unit/alignment/pairwise/edit_distance_unbanded_test_template.hpp index e3cd9b3322..4b3567817d 100644 --- a/test/unit/alignment/pairwise/edit_distance_unbanded_test_template.hpp +++ b/test/unit/alignment/pairwise/edit_distance_unbanded_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/alignment_fixture.hpp b/test/unit/alignment/pairwise/fixture/alignment_fixture.hpp index 51885b1a67..c5384aa5b1 100644 --- a/test/unit/alignment/pairwise/fixture/alignment_fixture.hpp +++ b/test/unit/alignment/pairwise/fixture/alignment_fixture.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/global_affine_banded.hpp b/test/unit/alignment/pairwise/fixture/global_affine_banded.hpp index 53643ff7ca..01665ad915 100644 --- a/test/unit/alignment/pairwise/fixture/global_affine_banded.hpp +++ b/test/unit/alignment/pairwise/fixture/global_affine_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/global_affine_unbanded.hpp b/test/unit/alignment/pairwise/fixture/global_affine_unbanded.hpp index cb39a60465..5b2d80adf3 100644 --- a/test/unit/alignment/pairwise/fixture/global_affine_unbanded.hpp +++ b/test/unit/alignment/pairwise/fixture/global_affine_unbanded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/global_edit_distance_max_errors_unbanded.hpp b/test/unit/alignment/pairwise/fixture/global_edit_distance_max_errors_unbanded.hpp index 1526c18d70..726b8e60ae 100644 --- a/test/unit/alignment/pairwise/fixture/global_edit_distance_max_errors_unbanded.hpp +++ b/test/unit/alignment/pairwise/fixture/global_edit_distance_max_errors_unbanded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/global_edit_distance_unbanded.hpp b/test/unit/alignment/pairwise/fixture/global_edit_distance_unbanded.hpp index e3ef13423f..464697485b 100644 --- a/test/unit/alignment/pairwise/fixture/global_edit_distance_unbanded.hpp +++ b/test/unit/alignment/pairwise/fixture/global_edit_distance_unbanded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/local_affine_banded.hpp b/test/unit/alignment/pairwise/fixture/local_affine_banded.hpp index 4e2ef09c41..e1b6ffaa21 100644 --- a/test/unit/alignment/pairwise/fixture/local_affine_banded.hpp +++ b/test/unit/alignment/pairwise/fixture/local_affine_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/local_affine_unbanded.hpp b/test/unit/alignment/pairwise/fixture/local_affine_unbanded.hpp index 7bb152cf01..752628a09f 100644 --- a/test/unit/alignment/pairwise/fixture/local_affine_unbanded.hpp +++ b/test/unit/alignment/pairwise/fixture/local_affine_unbanded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/semi_global_affine_banded.hpp b/test/unit/alignment/pairwise/fixture/semi_global_affine_banded.hpp index e375f824e6..353614cd1e 100644 --- a/test/unit/alignment/pairwise/fixture/semi_global_affine_banded.hpp +++ b/test/unit/alignment/pairwise/fixture/semi_global_affine_banded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/semi_global_affine_unbanded.hpp b/test/unit/alignment/pairwise/fixture/semi_global_affine_unbanded.hpp index 1a99113b0b..45fd647e77 100644 --- a/test/unit/alignment/pairwise/fixture/semi_global_affine_unbanded.hpp +++ b/test/unit/alignment/pairwise/fixture/semi_global_affine_unbanded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_max_errors_unbanded.hpp b/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_max_errors_unbanded.hpp index b592be6e50..3c09200e1a 100644 --- a/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_max_errors_unbanded.hpp +++ b/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_max_errors_unbanded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_unbanded.hpp b/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_unbanded.hpp index b01f7c7015..fbd2e2984b 100644 --- a/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_unbanded.hpp +++ b/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_unbanded.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/global_affine_banded_collection_simd_test.cpp b/test/unit/alignment/pairwise/global_affine_banded_collection_simd_test.cpp index 1a79cfdae0..2d115af80e 100644 --- a/test/unit/alignment/pairwise/global_affine_banded_collection_simd_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_banded_collection_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/global_affine_banded_test.cpp b/test/unit/alignment/pairwise/global_affine_banded_test.cpp index f3e9d6f8ad..0b396f1a26 100644 --- a/test/unit/alignment/pairwise/global_affine_banded_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_banded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/global_affine_unbanded_aa27_test.cpp b/test/unit/alignment/pairwise/global_affine_unbanded_aa27_test.cpp index 93b7da6dbb..17d3434b94 100644 --- a/test/unit/alignment/pairwise/global_affine_unbanded_aa27_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_unbanded_aa27_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/global_affine_unbanded_callback_test.cpp b/test/unit/alignment/pairwise/global_affine_unbanded_callback_test.cpp index 7321bdccf2..69437e0fae 100644 --- a/test/unit/alignment/pairwise/global_affine_unbanded_callback_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_unbanded_callback_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/global_affine_unbanded_collection_callback_test.cpp b/test/unit/alignment/pairwise/global_affine_unbanded_collection_callback_test.cpp index 87bd9fa02c..ee78c5e563 100644 --- a/test/unit/alignment/pairwise/global_affine_unbanded_collection_callback_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_unbanded_collection_callback_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_aa27_test.cpp b/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_aa27_test.cpp index 6522268f20..8770b47865 100644 --- a/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_aa27_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_aa27_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_test.cpp b/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_test.cpp index f3e16fffbe..4e682f576e 100644 --- a/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/global_affine_unbanded_collection_test.cpp b/test/unit/alignment/pairwise/global_affine_unbanded_collection_test.cpp index 3f86a71326..efc5996856 100644 --- a/test/unit/alignment/pairwise/global_affine_unbanded_collection_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_unbanded_collection_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/global_affine_unbanded_test.cpp b/test/unit/alignment/pairwise/global_affine_unbanded_test.cpp index 70addf0cb2..668ffe624b 100644 --- a/test/unit/alignment/pairwise/global_affine_unbanded_test.cpp +++ b/test/unit/alignment/pairwise/global_affine_unbanded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/local_affine_banded_test.cpp b/test/unit/alignment/pairwise/local_affine_banded_test.cpp index fa2826989e..a412ea6254 100644 --- a/test/unit/alignment/pairwise/local_affine_banded_test.cpp +++ b/test/unit/alignment/pairwise/local_affine_banded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/local_affine_unbanded_test.cpp b/test/unit/alignment/pairwise/local_affine_unbanded_test.cpp index a6c7127097..584371c0a2 100644 --- a/test/unit/alignment/pairwise/local_affine_unbanded_test.cpp +++ b/test/unit/alignment/pairwise/local_affine_unbanded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/pairwise_alignment_collection_callback_test_template.hpp b/test/unit/alignment/pairwise/pairwise_alignment_collection_callback_test_template.hpp index 28f80d2139..7551523a19 100644 --- a/test/unit/alignment/pairwise/pairwise_alignment_collection_callback_test_template.hpp +++ b/test/unit/alignment/pairwise/pairwise_alignment_collection_callback_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/pairwise_alignment_collection_test_template.hpp b/test/unit/alignment/pairwise/pairwise_alignment_collection_test_template.hpp index 7d1431d118..13c77a8f27 100644 --- a/test/unit/alignment/pairwise/pairwise_alignment_collection_test_template.hpp +++ b/test/unit/alignment/pairwise/pairwise_alignment_collection_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/pairwise_alignment_single_callback_test_template.hpp b/test/unit/alignment/pairwise/pairwise_alignment_single_callback_test_template.hpp index acb9936e9b..7498cecff4 100644 --- a/test/unit/alignment/pairwise/pairwise_alignment_single_callback_test_template.hpp +++ b/test/unit/alignment/pairwise/pairwise_alignment_single_callback_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/pairwise_alignment_single_test_template.hpp b/test/unit/alignment/pairwise/pairwise_alignment_single_test_template.hpp index 2714f19907..28f7849e86 100644 --- a/test/unit/alignment/pairwise/pairwise_alignment_single_test_template.hpp +++ b/test/unit/alignment/pairwise/pairwise_alignment_single_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/alignment/pairwise/policy/CMakeLists.txt b/test/unit/alignment/pairwise/policy/CMakeLists.txt index d27860b9d5..ce5281b1e2 100644 --- a/test/unit/alignment/pairwise/policy/CMakeLists.txt +++ b/test/unit/alignment/pairwise/policy/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (affine_gap_init_policy_test.cpp) seqan3_test (affine_gap_policy_test.cpp) diff --git a/test/unit/alignment/pairwise/policy/affine_gap_init_policy_test.cpp b/test/unit/alignment/pairwise/policy/affine_gap_init_policy_test.cpp index 57c1b84695..53e5d315cc 100644 --- a/test/unit/alignment/pairwise/policy/affine_gap_init_policy_test.cpp +++ b/test/unit/alignment/pairwise/policy/affine_gap_init_policy_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/policy/affine_gap_policy_test.cpp b/test/unit/alignment/pairwise/policy/affine_gap_policy_test.cpp index 57ffa931d0..099b11485a 100644 --- a/test/unit/alignment/pairwise/policy/affine_gap_policy_test.cpp +++ b/test/unit/alignment/pairwise/policy/affine_gap_policy_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/semi_global_affine_banded_test.cpp b/test/unit/alignment/pairwise/semi_global_affine_banded_test.cpp index 192f698242..ab13bb3e57 100644 --- a/test/unit/alignment/pairwise/semi_global_affine_banded_test.cpp +++ b/test/unit/alignment/pairwise/semi_global_affine_banded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/pairwise/semi_global_affine_unbanded_test.cpp b/test/unit/alignment/pairwise/semi_global_affine_unbanded_test.cpp index 9224cb4911..9f894ad6cd 100644 --- a/test/unit/alignment/pairwise/semi_global_affine_unbanded_test.cpp +++ b/test/unit/alignment/pairwise/semi_global_affine_unbanded_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/scoring/CMakeLists.txt b/test/unit/alignment/scoring/CMakeLists.txt index 9ac3304b6c..c0bee641a6 100644 --- a/test/unit/alignment/scoring/CMakeLists.txt +++ b/test/unit/alignment/scoring/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (scoring_scheme_test.cpp) diff --git a/test/unit/alignment/scoring/detail/CMakeLists.txt b/test/unit/alignment/scoring/detail/CMakeLists.txt index 6f0c1744d8..5623914d43 100644 --- a/test/unit/alignment/scoring/detail/CMakeLists.txt +++ b/test/unit/alignment/scoring/detail/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (simd_match_mismatch_scoring_scheme_test.cpp) seqan3_test (simd_matrix_scoring_scheme_test.cpp) diff --git a/test/unit/alignment/scoring/detail/simd_match_mismatch_scoring_scheme_test.cpp b/test/unit/alignment/scoring/detail/simd_match_mismatch_scoring_scheme_test.cpp index e4df896206..ae779df5a8 100644 --- a/test/unit/alignment/scoring/detail/simd_match_mismatch_scoring_scheme_test.cpp +++ b/test/unit/alignment/scoring/detail/simd_match_mismatch_scoring_scheme_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/scoring/detail/simd_matrix_scoring_scheme_test.cpp b/test/unit/alignment/scoring/detail/simd_matrix_scoring_scheme_test.cpp index 4066ac3c12..f8426af0a0 100644 --- a/test/unit/alignment/scoring/detail/simd_matrix_scoring_scheme_test.cpp +++ b/test/unit/alignment/scoring/detail/simd_matrix_scoring_scheme_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alignment/scoring/scoring_scheme_test.cpp b/test/unit/alignment/scoring/scoring_scheme_test.cpp index 0e3b5b5980..9ffb661904 100644 --- a/test/unit/alignment/scoring/scoring_scheme_test.cpp +++ b/test/unit/alignment/scoring/scoring_scheme_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/CMakeLists.txt b/test/unit/alphabet/CMakeLists.txt index 746c5d74c6..767597ae76 100644 --- a/test/unit/alphabet/CMakeLists.txt +++ b/test/unit/alphabet/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (alphabet_cereal_test.cpp) seqan3_test (alphabet_hash_test.cpp) diff --git a/test/unit/alphabet/adaptation/CMakeLists.txt b/test/unit/alphabet/adaptation/CMakeLists.txt index c53a7bfd4e..778e3b10d3 100644 --- a/test/unit/alphabet/adaptation/CMakeLists.txt +++ b/test/unit/alphabet/adaptation/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (char_test.cpp) seqan3_test (uint_test.cpp) diff --git a/test/unit/alphabet/adaptation/char_test.cpp b/test/unit/alphabet/adaptation/char_test.cpp index 26454b5f7b..a916f57def 100644 --- a/test/unit/alphabet/adaptation/char_test.cpp +++ b/test/unit/alphabet/adaptation/char_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/adaptation/uint_test.cpp b/test/unit/alphabet/adaptation/uint_test.cpp index 011ed75430..dfa8f0f9a0 100644 --- a/test/unit/alphabet/adaptation/uint_test.cpp +++ b/test/unit/alphabet/adaptation/uint_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/alphabet_cereal_test.cpp b/test/unit/alphabet/alphabet_cereal_test.cpp index 1b9a9fd00c..31d4017614 100644 --- a/test/unit/alphabet/alphabet_cereal_test.cpp +++ b/test/unit/alphabet/alphabet_cereal_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/alphabet_constexpr_test_template.hpp b/test/unit/alphabet/alphabet_constexpr_test_template.hpp index a019e0d2fe..c3dd047491 100644 --- a/test/unit/alphabet/alphabet_constexpr_test_template.hpp +++ b/test/unit/alphabet/alphabet_constexpr_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/alphabet_hash_test.cpp b/test/unit/alphabet/alphabet_hash_test.cpp index 5b7d63ae30..da7ca3f4a3 100644 --- a/test/unit/alphabet/alphabet_hash_test.cpp +++ b/test/unit/alphabet/alphabet_hash_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/alphabet_test_template.hpp b/test/unit/alphabet/alphabet_test_template.hpp index 8151fafdb0..d93839c870 100644 --- a/test/unit/alphabet/alphabet_test_template.hpp +++ b/test/unit/alphabet/alphabet_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/aminoacid/CMakeLists.txt b/test/unit/alphabet/aminoacid/CMakeLists.txt index f010107f8f..53f43e6924 100644 --- a/test/unit/alphabet/aminoacid/CMakeLists.txt +++ b/test/unit/alphabet/aminoacid/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (aa20_test.cpp) seqan3_test (aa27_test.cpp) seqan3_test (aa10murphy_test.cpp) diff --git a/test/unit/alphabet/aminoacid/aa10li_test.cpp b/test/unit/alphabet/aminoacid/aa10li_test.cpp index c87a8187d7..ab22c35fcc 100644 --- a/test/unit/alphabet/aminoacid/aa10li_test.cpp +++ b/test/unit/alphabet/aminoacid/aa10li_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/aminoacid/aa10murphy_test.cpp b/test/unit/alphabet/aminoacid/aa10murphy_test.cpp index 02f047935a..3928d21d95 100644 --- a/test/unit/alphabet/aminoacid/aa10murphy_test.cpp +++ b/test/unit/alphabet/aminoacid/aa10murphy_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/aminoacid/aa20_test.cpp b/test/unit/alphabet/aminoacid/aa20_test.cpp index 6e2812b212..72bc18f962 100644 --- a/test/unit/alphabet/aminoacid/aa20_test.cpp +++ b/test/unit/alphabet/aminoacid/aa20_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/aminoacid/aa27_test.cpp b/test/unit/alphabet/aminoacid/aa27_test.cpp index d8b670ad7d..20968fa6a8 100644 --- a/test/unit/alphabet/aminoacid/aa27_test.cpp +++ b/test/unit/alphabet/aminoacid/aa27_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/aminoacid/aminoacid_conversion_integration_test.cpp b/test/unit/alphabet/aminoacid/aminoacid_conversion_integration_test.cpp index 85fa923660..fcfa5399ca 100644 --- a/test/unit/alphabet/aminoacid/aminoacid_conversion_integration_test.cpp +++ b/test/unit/alphabet/aminoacid/aminoacid_conversion_integration_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/aminoacid/aminoacid_test_template.hpp b/test/unit/alphabet/aminoacid/aminoacid_test_template.hpp index bc07d7f5ca..e3512a0bb7 100644 --- a/test/unit/alphabet/aminoacid/aminoacid_test_template.hpp +++ b/test/unit/alphabet/aminoacid/aminoacid_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/aminoacid/aminoacid_translation_test.cpp b/test/unit/alphabet/aminoacid/aminoacid_translation_test.cpp index cfdb9bd0e2..200b639245 100644 --- a/test/unit/alphabet/aminoacid/aminoacid_translation_test.cpp +++ b/test/unit/alphabet/aminoacid/aminoacid_translation_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/cigar/CMakeLists.txt b/test/unit/alphabet/cigar/CMakeLists.txt index a3db16b76f..b17c590bf2 100644 --- a/test/unit/alphabet/cigar/CMakeLists.txt +++ b/test/unit/alphabet/cigar/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (debug_stream_cigar_test.cpp) seqan3_test (cigar_test.cpp) diff --git a/test/unit/alphabet/cigar/cigar_test.cpp b/test/unit/alphabet/cigar/cigar_test.cpp index 41f53399a2..56bd025d98 100644 --- a/test/unit/alphabet/cigar/cigar_test.cpp +++ b/test/unit/alphabet/cigar/cigar_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/cigar/debug_stream_cigar_test.cpp b/test/unit/alphabet/cigar/debug_stream_cigar_test.cpp index ec69be10be..70eb263cb2 100644 --- a/test/unit/alphabet/cigar/debug_stream_cigar_test.cpp +++ b/test/unit/alphabet/cigar/debug_stream_cigar_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/cigar/exposition_only/CMakeLists.txt b/test/unit/alphabet/cigar/exposition_only/CMakeLists.txt index 950c3a2729..cb328df323 100644 --- a/test/unit/alphabet/cigar/exposition_only/CMakeLists.txt +++ b/test/unit/alphabet/cigar/exposition_only/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (cigar_operation_test.cpp) diff --git a/test/unit/alphabet/cigar/exposition_only/cigar_operation_test.cpp b/test/unit/alphabet/cigar/exposition_only/cigar_operation_test.cpp index 8459be78d0..3067b59092 100644 --- a/test/unit/alphabet/cigar/exposition_only/cigar_operation_test.cpp +++ b/test/unit/alphabet/cigar/exposition_only/cigar_operation_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/composite/CMakeLists.txt b/test/unit/alphabet/composite/CMakeLists.txt index 0e65d9d61c..5c9677d05b 100644 --- a/test/unit/alphabet/composite/CMakeLists.txt +++ b/test/unit/alphabet/composite/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (alphabet_tuple_base_test.cpp) seqan3_test (alphabet_variant_test.cpp) seqan3_test (alphabet_variant_detail_test.cpp) diff --git a/test/unit/alphabet/composite/alphabet_tuple_base_test.cpp b/test/unit/alphabet/composite/alphabet_tuple_base_test.cpp index fc5deb4601..ec07858bca 100644 --- a/test/unit/alphabet/composite/alphabet_tuple_base_test.cpp +++ b/test/unit/alphabet/composite/alphabet_tuple_base_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/composite/alphabet_tuple_base_test_template.hpp b/test/unit/alphabet/composite/alphabet_tuple_base_test_template.hpp index 319e12e447..4c9f8b72ca 100644 --- a/test/unit/alphabet/composite/alphabet_tuple_base_test_template.hpp +++ b/test/unit/alphabet/composite/alphabet_tuple_base_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/composite/alphabet_variant_detail_test.cpp b/test/unit/alphabet/composite/alphabet_variant_detail_test.cpp index 2a9c8cd827..df76b3d084 100644 --- a/test/unit/alphabet/composite/alphabet_variant_detail_test.cpp +++ b/test/unit/alphabet/composite/alphabet_variant_detail_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/composite/alphabet_variant_test.cpp b/test/unit/alphabet/composite/alphabet_variant_test.cpp index 615dec42b7..8d6875f795 100644 --- a/test/unit/alphabet/composite/alphabet_variant_test.cpp +++ b/test/unit/alphabet/composite/alphabet_variant_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/composite/composite_integration_test.cpp b/test/unit/alphabet/composite/composite_integration_test.cpp index 2c37ba8e96..d9741d0396 100644 --- a/test/unit/alphabet/composite/composite_integration_test.cpp +++ b/test/unit/alphabet/composite/composite_integration_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/composite/semialphabet_any_test.cpp b/test/unit/alphabet/composite/semialphabet_any_test.cpp index 5d5b659fd1..3f17062a45 100644 --- a/test/unit/alphabet/composite/semialphabet_any_test.cpp +++ b/test/unit/alphabet/composite/semialphabet_any_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/container/CMakeLists.txt b/test/unit/alphabet/container/CMakeLists.txt index 1db2a31e98..e8ce5587bc 100644 --- a/test/unit/alphabet/container/CMakeLists.txt +++ b/test/unit/alphabet/container/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (bitpacked_sequence_test.cpp) seqan3_test (container_concept_test.cpp) seqan3_test (container_of_container_test.cpp) diff --git a/test/unit/alphabet/container/bitpacked_sequence_test.cpp b/test/unit/alphabet/container/bitpacked_sequence_test.cpp index c3733ec473..a1e9f59787 100644 --- a/test/unit/alphabet/container/bitpacked_sequence_test.cpp +++ b/test/unit/alphabet/container/bitpacked_sequence_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/container/container_concept_test.cpp b/test/unit/alphabet/container/container_concept_test.cpp index f6dd0d60ff..48b36569c3 100644 --- a/test/unit/alphabet/container/container_concept_test.cpp +++ b/test/unit/alphabet/container/container_concept_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/container/container_of_container_test.cpp b/test/unit/alphabet/container/container_of_container_test.cpp index 816405a188..72cf6c3e8d 100644 --- a/test/unit/alphabet/container/container_of_container_test.cpp +++ b/test/unit/alphabet/container/container_of_container_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/container/debug_stream_container_of_container_test.cpp b/test/unit/alphabet/container/debug_stream_container_of_container_test.cpp index 9805099e89..84043ccd5f 100644 --- a/test/unit/alphabet/container/debug_stream_container_of_container_test.cpp +++ b/test/unit/alphabet/container/debug_stream_container_of_container_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/container/debug_stream_container_test.cpp b/test/unit/alphabet/container/debug_stream_container_test.cpp index 9d52e63c1e..4da289e8a6 100644 --- a/test/unit/alphabet/container/debug_stream_container_test.cpp +++ b/test/unit/alphabet/container/debug_stream_container_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/custom_alphabet2_test.cpp b/test/unit/alphabet/custom_alphabet2_test.cpp index e0567eb7e6..c57469bc3f 100644 --- a/test/unit/alphabet/custom_alphabet2_test.cpp +++ b/test/unit/alphabet/custom_alphabet2_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/custom_alphabet3_test.cpp b/test/unit/alphabet/custom_alphabet3_test.cpp index b0d9e2079d..aeeca850f2 100644 --- a/test/unit/alphabet/custom_alphabet3_test.cpp +++ b/test/unit/alphabet/custom_alphabet3_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/custom_alphabet4_test.cpp b/test/unit/alphabet/custom_alphabet4_test.cpp index 8a430deaae..cd541fef20 100644 --- a/test/unit/alphabet/custom_alphabet4_test.cpp +++ b/test/unit/alphabet/custom_alphabet4_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/custom_alphabet_test.cpp b/test/unit/alphabet/custom_alphabet_test.cpp index 1a3c0d867b..673b24cc4c 100644 --- a/test/unit/alphabet/custom_alphabet_test.cpp +++ b/test/unit/alphabet/custom_alphabet_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/detail/CMakeLists.txt b/test/unit/alphabet/detail/CMakeLists.txt index 136d2ecda8..449fe6d60a 100644 --- a/test/unit/alphabet/detail/CMakeLists.txt +++ b/test/unit/alphabet/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (alphabet_proxy_test.cpp) seqan3_test (comparison_test.cpp) seqan3_test (debug_stream_alphabet_dna4_test.cpp) diff --git a/test/unit/alphabet/detail/alphabet_proxy_test.cpp b/test/unit/alphabet/detail/alphabet_proxy_test.cpp index f72c812449..ed7443d58d 100644 --- a/test/unit/alphabet/detail/alphabet_proxy_test.cpp +++ b/test/unit/alphabet/detail/alphabet_proxy_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/detail/comparison_test.cpp b/test/unit/alphabet/detail/comparison_test.cpp index bc37bc35c1..0dfd638c87 100644 --- a/test/unit/alphabet/detail/comparison_test.cpp +++ b/test/unit/alphabet/detail/comparison_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/detail/debug_stream_alphabet_dna4_test.cpp b/test/unit/alphabet/detail/debug_stream_alphabet_dna4_test.cpp index 41523ffe24..5f6779d7d2 100644 --- a/test/unit/alphabet/detail/debug_stream_alphabet_dna4_test.cpp +++ b/test/unit/alphabet/detail/debug_stream_alphabet_dna4_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/detail/debug_stream_alphabet_mask_test.cpp b/test/unit/alphabet/detail/debug_stream_alphabet_mask_test.cpp index 42373b2bfb..38bea50536 100644 --- a/test/unit/alphabet/detail/debug_stream_alphabet_mask_test.cpp +++ b/test/unit/alphabet/detail/debug_stream_alphabet_mask_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/detail/debug_stream_alphabet_test.cpp b/test/unit/alphabet/detail/debug_stream_alphabet_test.cpp index b7cfa611b5..67eac02e37 100644 --- a/test/unit/alphabet/detail/debug_stream_alphabet_test.cpp +++ b/test/unit/alphabet/detail/debug_stream_alphabet_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/gap/CMakeLists.txt b/test/unit/alphabet/gap/CMakeLists.txt index 5b4e4c4298..eeaad812fe 100644 --- a/test/unit/alphabet/gap/CMakeLists.txt +++ b/test/unit/alphabet/gap/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (gap_test.cpp) seqan3_test (gapped_test.cpp) diff --git a/test/unit/alphabet/gap/gap_test.cpp b/test/unit/alphabet/gap/gap_test.cpp index 700df42676..6cbe6aa6fb 100644 --- a/test/unit/alphabet/gap/gap_test.cpp +++ b/test/unit/alphabet/gap/gap_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/gap/gapped_test.cpp b/test/unit/alphabet/gap/gapped_test.cpp index ebca603dae..28ed407416 100644 --- a/test/unit/alphabet/gap/gapped_test.cpp +++ b/test/unit/alphabet/gap/gapped_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/mask/CMakeLists.txt b/test/unit/alphabet/mask/CMakeLists.txt index 4148680aa0..84a7f0489c 100644 --- a/test/unit/alphabet/mask/CMakeLists.txt +++ b/test/unit/alphabet/mask/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (mask_test.cpp) seqan3_test (masked_test.cpp) diff --git a/test/unit/alphabet/mask/mask_test.cpp b/test/unit/alphabet/mask/mask_test.cpp index 45aa44e370..6b4ff9d840 100644 --- a/test/unit/alphabet/mask/mask_test.cpp +++ b/test/unit/alphabet/mask/mask_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/mask/masked_test.cpp b/test/unit/alphabet/mask/masked_test.cpp index d412c1bad2..502204505a 100644 --- a/test/unit/alphabet/mask/masked_test.cpp +++ b/test/unit/alphabet/mask/masked_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/nucleotide/CMakeLists.txt b/test/unit/alphabet/nucleotide/CMakeLists.txt index 6c40b67a19..d6165af6ed 100644 --- a/test/unit/alphabet/nucleotide/CMakeLists.txt +++ b/test/unit/alphabet/nucleotide/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (dna4_test.cpp) seqan3_test (dna5_test.cpp) seqan3_test (dna15_test.cpp) diff --git a/test/unit/alphabet/nucleotide/dna15_test.cpp b/test/unit/alphabet/nucleotide/dna15_test.cpp index 7be5ab19d0..dbd7a6c1b9 100644 --- a/test/unit/alphabet/nucleotide/dna15_test.cpp +++ b/test/unit/alphabet/nucleotide/dna15_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/nucleotide/dna16sam_test.cpp b/test/unit/alphabet/nucleotide/dna16sam_test.cpp index 1caff2e58d..6cc29ff510 100644 --- a/test/unit/alphabet/nucleotide/dna16sam_test.cpp +++ b/test/unit/alphabet/nucleotide/dna16sam_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/nucleotide/dna3bs_test.cpp b/test/unit/alphabet/nucleotide/dna3bs_test.cpp index ce47e0c28c..c061b10599 100644 --- a/test/unit/alphabet/nucleotide/dna3bs_test.cpp +++ b/test/unit/alphabet/nucleotide/dna3bs_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/nucleotide/dna4_test.cpp b/test/unit/alphabet/nucleotide/dna4_test.cpp index 5ba8300c65..cb994278c3 100644 --- a/test/unit/alphabet/nucleotide/dna4_test.cpp +++ b/test/unit/alphabet/nucleotide/dna4_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/nucleotide/dna5_test.cpp b/test/unit/alphabet/nucleotide/dna5_test.cpp index d822449088..f36019e5db 100644 --- a/test/unit/alphabet/nucleotide/dna5_test.cpp +++ b/test/unit/alphabet/nucleotide/dna5_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/nucleotide/nucleotide_conversion_integration_test.cpp b/test/unit/alphabet/nucleotide/nucleotide_conversion_integration_test.cpp index d852196d5b..387fc3e01f 100644 --- a/test/unit/alphabet/nucleotide/nucleotide_conversion_integration_test.cpp +++ b/test/unit/alphabet/nucleotide/nucleotide_conversion_integration_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/nucleotide/nucleotide_test_template.hpp b/test/unit/alphabet/nucleotide/nucleotide_test_template.hpp index b963638a59..02598ae777 100644 --- a/test/unit/alphabet/nucleotide/nucleotide_test_template.hpp +++ b/test/unit/alphabet/nucleotide/nucleotide_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/nucleotide/rna15_test.cpp b/test/unit/alphabet/nucleotide/rna15_test.cpp index 0980d6c69d..9dd751669a 100644 --- a/test/unit/alphabet/nucleotide/rna15_test.cpp +++ b/test/unit/alphabet/nucleotide/rna15_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/nucleotide/rna4_test.cpp b/test/unit/alphabet/nucleotide/rna4_test.cpp index cfee321c77..cd61db58b6 100644 --- a/test/unit/alphabet/nucleotide/rna4_test.cpp +++ b/test/unit/alphabet/nucleotide/rna4_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/nucleotide/rna5_test.cpp b/test/unit/alphabet/nucleotide/rna5_test.cpp index 02610d36aa..3703a3da58 100644 --- a/test/unit/alphabet/nucleotide/rna5_test.cpp +++ b/test/unit/alphabet/nucleotide/rna5_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/nucleotide/simd_dna4_test.cpp b/test/unit/alphabet/nucleotide/simd_dna4_test.cpp index a187671b53..9091c6ba45 100644 --- a/test/unit/alphabet/nucleotide/simd_dna4_test.cpp +++ b/test/unit/alphabet/nucleotide/simd_dna4_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/quality/CMakeLists.txt b/test/unit/alphabet/quality/CMakeLists.txt index e004e2a513..a1a18d6b87 100644 --- a/test/unit/alphabet/quality/CMakeLists.txt +++ b/test/unit/alphabet/quality/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (phred42_test.cpp) seqan3_test (phred63_test.cpp) seqan3_test (phred68solexa_test.cpp) diff --git a/test/unit/alphabet/quality/phred42_test.cpp b/test/unit/alphabet/quality/phred42_test.cpp index c3e41d85d0..f87549a1f9 100644 --- a/test/unit/alphabet/quality/phred42_test.cpp +++ b/test/unit/alphabet/quality/phred42_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/quality/phred63_test.cpp b/test/unit/alphabet/quality/phred63_test.cpp index 98d1468933..e92f107032 100644 --- a/test/unit/alphabet/quality/phred63_test.cpp +++ b/test/unit/alphabet/quality/phred63_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/quality/phred68solexa_test.cpp b/test/unit/alphabet/quality/phred68solexa_test.cpp index ab05ba0d1f..2114330a4d 100644 --- a/test/unit/alphabet/quality/phred68solexa_test.cpp +++ b/test/unit/alphabet/quality/phred68solexa_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/quality/phred94_test.cpp b/test/unit/alphabet/quality/phred94_test.cpp index c9281cb9a9..410da34098 100644 --- a/test/unit/alphabet/quality/phred94_test.cpp +++ b/test/unit/alphabet/quality/phred94_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/quality/phred_test_template.hpp b/test/unit/alphabet/quality/phred_test_template.hpp index ea2293e480..0186dbda70 100644 --- a/test/unit/alphabet/quality/phred_test_template.hpp +++ b/test/unit/alphabet/quality/phred_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/quality/qualified_test.cpp b/test/unit/alphabet/quality/qualified_test.cpp index 19132ec97f..8bdf790cd7 100644 --- a/test/unit/alphabet/quality/qualified_test.cpp +++ b/test/unit/alphabet/quality/qualified_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/quality/quality_conversion_integration_test.cpp b/test/unit/alphabet/quality/quality_conversion_integration_test.cpp index e162767979..733ff6320d 100644 --- a/test/unit/alphabet/quality/quality_conversion_integration_test.cpp +++ b/test/unit/alphabet/quality/quality_conversion_integration_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/range/CMakeLists.txt b/test/unit/alphabet/range/CMakeLists.txt index 483bd3fe5f..0879543b15 100644 --- a/test/unit/alphabet/range/CMakeLists.txt +++ b/test/unit/alphabet/range/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (alphabet_range_hash_test.cpp) diff --git a/test/unit/alphabet/range/alphabet_range_hash_test.cpp b/test/unit/alphabet/range/alphabet_range_hash_test.cpp index d8770c35f1..91a6230d92 100644 --- a/test/unit/alphabet/range/alphabet_range_hash_test.cpp +++ b/test/unit/alphabet/range/alphabet_range_hash_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/semi_alphabet_constexpr_test_template.hpp b/test/unit/alphabet/semi_alphabet_constexpr_test_template.hpp index 71f9b25f2e..ca4d44e104 100644 --- a/test/unit/alphabet/semi_alphabet_constexpr_test_template.hpp +++ b/test/unit/alphabet/semi_alphabet_constexpr_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/semi_alphabet_test_template.hpp b/test/unit/alphabet/semi_alphabet_test_template.hpp index 11b89e1ee7..3a265bedae 100644 --- a/test/unit/alphabet/semi_alphabet_test_template.hpp +++ b/test/unit/alphabet/semi_alphabet_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/structure/CMakeLists.txt b/test/unit/alphabet/structure/CMakeLists.txt index edb8b1b4c1..eb8b1c152d 100644 --- a/test/unit/alphabet/structure/CMakeLists.txt +++ b/test/unit/alphabet/structure/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (dot_bracket3_test.cpp) seqan3_test (dssp9_test.cpp) seqan3_test (structured_aa_test.cpp) diff --git a/test/unit/alphabet/structure/dot_bracket3_test.cpp b/test/unit/alphabet/structure/dot_bracket3_test.cpp index ce919ee49e..28d045e232 100644 --- a/test/unit/alphabet/structure/dot_bracket3_test.cpp +++ b/test/unit/alphabet/structure/dot_bracket3_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/structure/dssp9_test.cpp b/test/unit/alphabet/structure/dssp9_test.cpp index c37331c791..eb45b42da5 100644 --- a/test/unit/alphabet/structure/dssp9_test.cpp +++ b/test/unit/alphabet/structure/dssp9_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/structure/structured_aa_test.cpp b/test/unit/alphabet/structure/structured_aa_test.cpp index f57d17e970..57a2342e02 100644 --- a/test/unit/alphabet/structure/structured_aa_test.cpp +++ b/test/unit/alphabet/structure/structured_aa_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/structure/structured_rna_test.cpp b/test/unit/alphabet/structure/structured_rna_test.cpp index f0753ec56b..e4c9dbbe42 100644 --- a/test/unit/alphabet/structure/structured_rna_test.cpp +++ b/test/unit/alphabet/structure/structured_rna_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/structure/wuss_test.cpp b/test/unit/alphabet/structure/wuss_test.cpp index e92f97079b..e1790aeb5d 100644 --- a/test/unit/alphabet/structure/wuss_test.cpp +++ b/test/unit/alphabet/structure/wuss_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/alphabet/views/CMakeLists.txt b/test/unit/alphabet/views/CMakeLists.txt index 9ce5508898..c7997499aa 100644 --- a/test/unit/alphabet/views/CMakeLists.txt +++ b/test/unit/alphabet/views/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (char_to_test.cpp) diff --git a/test/unit/alphabet/views/char_strictly_to_test.cpp b/test/unit/alphabet/views/char_strictly_to_test.cpp index 0ae6a229a7..cfa673666c 100644 --- a/test/unit/alphabet/views/char_strictly_to_test.cpp +++ b/test/unit/alphabet/views/char_strictly_to_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/char_to_test.cpp b/test/unit/alphabet/views/char_to_test.cpp index 02cc4b3d6e..4c1348fb19 100644 --- a/test/unit/alphabet/views/char_to_test.cpp +++ b/test/unit/alphabet/views/char_to_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/complement_test.cpp b/test/unit/alphabet/views/complement_test.cpp index d1adc6df37..e06ebdaf64 100644 --- a/test/unit/alphabet/views/complement_test.cpp +++ b/test/unit/alphabet/views/complement_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/rank_to_test.cpp b/test/unit/alphabet/views/rank_to_test.cpp index b074ba44d0..fd6bf80d3d 100644 --- a/test/unit/alphabet/views/rank_to_test.cpp +++ b/test/unit/alphabet/views/rank_to_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/to_char_test.cpp b/test/unit/alphabet/views/to_char_test.cpp index 730a70db11..0a2f222ac8 100644 --- a/test/unit/alphabet/views/to_char_test.cpp +++ b/test/unit/alphabet/views/to_char_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/to_rank_test.cpp b/test/unit/alphabet/views/to_rank_test.cpp index 8689f87732..1fc11cd84c 100644 --- a/test/unit/alphabet/views/to_rank_test.cpp +++ b/test/unit/alphabet/views/to_rank_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/translate_join_test.cpp b/test/unit/alphabet/views/translate_join_test.cpp index 62426761b4..912aba4d19 100644 --- a/test/unit/alphabet/views/translate_join_test.cpp +++ b/test/unit/alphabet/views/translate_join_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/translate_test.cpp b/test/unit/alphabet/views/translate_test.cpp index 641a650e4c..9683729314 100644 --- a/test/unit/alphabet/views/translate_test.cpp +++ b/test/unit/alphabet/views/translate_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/trim_quality_test.cpp b/test/unit/alphabet/views/trim_quality_test.cpp index 3555ff45f7..efda964c3f 100644 --- a/test/unit/alphabet/views/trim_quality_test.cpp +++ b/test/unit/alphabet/views/trim_quality_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/alphabet/views/validate_char_for_test.cpp b/test/unit/alphabet/views/validate_char_for_test.cpp index 6bd0574176..5dacae8495 100644 --- a/test/unit/alphabet/views/validate_char_for_test.cpp +++ b/test/unit/alphabet/views/validate_char_for_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/argument_parser/CMakeLists.txt b/test/unit/argument_parser/CMakeLists.txt index 6f126c5d3b..68b1ddbefd 100644 --- a/test/unit/argument_parser/CMakeLists.txt +++ b/test/unit/argument_parser/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (format_parse_test.cpp) seqan3_test (format_parse_validators_test.cpp) diff --git a/test/unit/argument_parser/argument_parser_design_error_test.cpp b/test/unit/argument_parser/argument_parser_design_error_test.cpp index 311b5bc40a..568deb539f 100644 --- a/test/unit/argument_parser/argument_parser_design_error_test.cpp +++ b/test/unit/argument_parser/argument_parser_design_error_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/argument_parser/detail/CMakeLists.txt b/test/unit/argument_parser/detail/CMakeLists.txt index d3b314bc96..a9725af203 100644 --- a/test/unit/argument_parser/detail/CMakeLists.txt +++ b/test/unit/argument_parser/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + find_path (SEQAN3_TEST_LICENSE_DIR NAMES LICENSE.md HINTS "${SEQAN3_CLONE_DIR}") diff --git a/test/unit/argument_parser/detail/concept_is_container_option_test.cpp b/test/unit/argument_parser/detail/concept_is_container_option_test.cpp index 041d94c481..7e7634d08f 100644 --- a/test/unit/argument_parser/detail/concept_is_container_option_test.cpp +++ b/test/unit/argument_parser/detail/concept_is_container_option_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/argument_parser/detail/format_help_test.cpp b/test/unit/argument_parser/detail/format_help_test.cpp index 1cdcc6c0a3..7591786fe4 100644 --- a/test/unit/argument_parser/detail/format_help_test.cpp +++ b/test/unit/argument_parser/detail/format_help_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/argument_parser/detail/format_html_test.cpp b/test/unit/argument_parser/detail/format_html_test.cpp index 3c68ed8bb7..ed526d5edf 100644 --- a/test/unit/argument_parser/detail/format_html_test.cpp +++ b/test/unit/argument_parser/detail/format_html_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/argument_parser/detail/format_man_test.cpp b/test/unit/argument_parser/detail/format_man_test.cpp index 5cdd9cdeac..af88a29b7f 100644 --- a/test/unit/argument_parser/detail/format_man_test.cpp +++ b/test/unit/argument_parser/detail/format_man_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/argument_parser/detail/version_check_debug_test.cpp b/test/unit/argument_parser/detail/version_check_debug_test.cpp index 871599f6bc..734ccbd109 100644 --- a/test/unit/argument_parser/detail/version_check_debug_test.cpp +++ b/test/unit/argument_parser/detail/version_check_debug_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #if defined(NDEBUG) # undef NDEBUG // test in debug mode diff --git a/test/unit/argument_parser/detail/version_check_release_test.cpp b/test/unit/argument_parser/detail/version_check_release_test.cpp index ce5ec32318..b2033535d4 100644 --- a/test/unit/argument_parser/detail/version_check_release_test.cpp +++ b/test/unit/argument_parser/detail/version_check_release_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #if !defined(NDEBUG) # define NDEBUG // test in release mode diff --git a/test/unit/argument_parser/detail/version_check_test.hpp b/test/unit/argument_parser/detail/version_check_test.hpp index 7ec894cf12..7b5e5d4095 100644 --- a/test/unit/argument_parser/detail/version_check_test.hpp +++ b/test/unit/argument_parser/detail/version_check_test.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/argument_parser/format_parse_test.cpp b/test/unit/argument_parser/format_parse_test.cpp index ab90bf3801..02e43e0670 100644 --- a/test/unit/argument_parser/format_parse_test.cpp +++ b/test/unit/argument_parser/format_parse_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/argument_parser/format_parse_validators_test.cpp b/test/unit/argument_parser/format_parse_validators_test.cpp index 50faaeb723..126cd08d13 100644 --- a/test/unit/argument_parser/format_parse_validators_test.cpp +++ b/test/unit/argument_parser/format_parse_validators_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/contrib/CMakeLists.txt b/test/unit/contrib/CMakeLists.txt index 9ddf96d30c..eb99a605f5 100644 --- a/test/unit/contrib/CMakeLists.txt +++ b/test/unit/contrib/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () diff --git a/test/unit/contrib/parallel/CMakeLists.txt b/test/unit/contrib/parallel/CMakeLists.txt index 2077d6074e..c642e8e800 100644 --- a/test/unit/contrib/parallel/CMakeLists.txt +++ b/test/unit/contrib/parallel/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (buffer_queue_parallel_test.cpp) seqan3_test (buffer_queue_test.cpp) diff --git a/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp b/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp index 00a9179623..6bf5b553ed 100644 --- a/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp +++ b/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/contrib/parallel/buffer_queue_test.cpp b/test/unit/contrib/parallel/buffer_queue_test.cpp index 95e33d05c8..84b4dc4a28 100644 --- a/test/unit/contrib/parallel/buffer_queue_test.cpp +++ b/test/unit/contrib/parallel/buffer_queue_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/contrib/stream/CMakeLists.txt b/test/unit/contrib/stream/CMakeLists.txt index 973710da24..1eb3cbf7a5 100644 --- a/test/unit/contrib/stream/CMakeLists.txt +++ b/test/unit/contrib/stream/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + if (BZIP2_FOUND) seqan3_test (bz2_istream_test.cpp) seqan3_test (bz2_ostream_test.cpp) diff --git a/test/unit/contrib/stream/bgzf_istream_test.cpp b/test/unit/contrib/stream/bgzf_istream_test.cpp index 53375f8afb..f6b5a100d7 100644 --- a/test/unit/contrib/stream/bgzf_istream_test.cpp +++ b/test/unit/contrib/stream/bgzf_istream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/contrib/stream/bgzf_ostream_test.cpp b/test/unit/contrib/stream/bgzf_ostream_test.cpp index b317244cb6..eb8d11373d 100644 --- a/test/unit/contrib/stream/bgzf_ostream_test.cpp +++ b/test/unit/contrib/stream/bgzf_ostream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/contrib/stream/bz2_istream_test.cpp b/test/unit/contrib/stream/bz2_istream_test.cpp index 7eb81e17fa..b430e5993e 100644 --- a/test/unit/contrib/stream/bz2_istream_test.cpp +++ b/test/unit/contrib/stream/bz2_istream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/contrib/stream/bz2_ostream_test.cpp b/test/unit/contrib/stream/bz2_ostream_test.cpp index 974e53bc2f..d8333d1930 100644 --- a/test/unit/contrib/stream/bz2_ostream_test.cpp +++ b/test/unit/contrib/stream/bz2_ostream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/contrib/stream/gz_istream_test.cpp b/test/unit/contrib/stream/gz_istream_test.cpp index 4c48a0d9e0..341fa29f1b 100644 --- a/test/unit/contrib/stream/gz_istream_test.cpp +++ b/test/unit/contrib/stream/gz_istream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/contrib/stream/gz_ostream_test.cpp b/test/unit/contrib/stream/gz_ostream_test.cpp index 9128e0c014..943e0c2929 100644 --- a/test/unit/contrib/stream/gz_ostream_test.cpp +++ b/test/unit/contrib/stream/gz_ostream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/CMakeLists.txt b/test/unit/core/CMakeLists.txt index dcc430bf66..6fa4e45d44 100644 --- a/test/unit/core/CMakeLists.txt +++ b/test/unit/core/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (add_enum_bitwise_operators_test.cpp) diff --git a/test/unit/core/add_enum_bitwise_operators_test.cpp b/test/unit/core/add_enum_bitwise_operators_test.cpp index 1062e1d09d..f67b0e98b2 100644 --- a/test/unit/core/add_enum_bitwise_operators_test.cpp +++ b/test/unit/core/add_enum_bitwise_operators_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/algorithm/CMakeLists.txt b/test/unit/core/algorithm/CMakeLists.txt index e8c2167f1b..0c76a860bf 100644 --- a/test/unit/core/algorithm/CMakeLists.txt +++ b/test/unit/core/algorithm/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (algorithm_result_generator_range_test.cpp) add_subdirectories () diff --git a/test/unit/core/algorithm/algorithm_result_generator_range_test.cpp b/test/unit/core/algorithm/algorithm_result_generator_range_test.cpp index 817308cea1..6e0b2307b7 100644 --- a/test/unit/core/algorithm/algorithm_result_generator_range_test.cpp +++ b/test/unit/core/algorithm/algorithm_result_generator_range_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/algorithm/detail/CMakeLists.txt b/test/unit/core/algorithm/detail/CMakeLists.txt index 168a320398..a3ee841079 100644 --- a/test/unit/core/algorithm/detail/CMakeLists.txt +++ b/test/unit/core/algorithm/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (algorithm_executor_blocking_test.cpp) seqan3_test (execution_handler_sequential_test.cpp) seqan3_test (execution_handler_parallel_test.cpp) diff --git a/test/unit/core/algorithm/detail/algorithm_executor_blocking_test.cpp b/test/unit/core/algorithm/detail/algorithm_executor_blocking_test.cpp index fc7b57255e..009858d7b1 100644 --- a/test/unit/core/algorithm/detail/algorithm_executor_blocking_test.cpp +++ b/test/unit/core/algorithm/detail/algorithm_executor_blocking_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/algorithm/detail/execution_handler_parallel_test.cpp b/test/unit/core/algorithm/detail/execution_handler_parallel_test.cpp index 4532123b72..1b46eb885c 100644 --- a/test/unit/core/algorithm/detail/execution_handler_parallel_test.cpp +++ b/test/unit/core/algorithm/detail/execution_handler_parallel_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/algorithm/detail/execution_handler_sequential_test.cpp b/test/unit/core/algorithm/detail/execution_handler_sequential_test.cpp index 7da37b00d0..1cc68fde43 100644 --- a/test/unit/core/algorithm/detail/execution_handler_sequential_test.cpp +++ b/test/unit/core/algorithm/detail/execution_handler_sequential_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/algorithm/detail/execution_handler_template.hpp b/test/unit/core/algorithm/detail/execution_handler_template.hpp index f97c6e39e8..3b6a9efb18 100644 --- a/test/unit/core/algorithm/detail/execution_handler_template.hpp +++ b/test/unit/core/algorithm/detail/execution_handler_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/concept/CMakeLists.txt b/test/unit/core/concept/CMakeLists.txt index 2d8bd9242d..7e118553ad 100644 --- a/test/unit/core/concept/CMakeLists.txt +++ b/test/unit/core/concept/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (cereal_test.cpp) diff --git a/test/unit/core/concept/cereal_test.cpp b/test/unit/core/concept/cereal_test.cpp index 714075ef43..81e3654a53 100644 --- a/test/unit/core/concept/cereal_test.cpp +++ b/test/unit/core/concept/cereal_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/configuration/CMakeLists.txt b/test/unit/core/configuration/CMakeLists.txt index 21f2cd579a..aa43559f58 100644 --- a/test/unit/core/configuration/CMakeLists.txt +++ b/test/unit/core/configuration/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (configuration_test.cpp) seqan3_test (pipeable_config_element_test.cpp CYCLIC_DEPENDING_INCLUDES include-seqan3-core-configuration-configuration.hpp) diff --git a/test/unit/core/configuration/configuration_mock.hpp b/test/unit/core/configuration/configuration_mock.hpp index 0fa7f9791b..b2f87dbf2a 100644 --- a/test/unit/core/configuration/configuration_mock.hpp +++ b/test/unit/core/configuration/configuration_mock.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/configuration/configuration_test.cpp b/test/unit/core/configuration/configuration_test.cpp index 4ddeef05ed..9efa0ebc4c 100644 --- a/test/unit/core/configuration/configuration_test.cpp +++ b/test/unit/core/configuration/configuration_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/configuration/pipeable_config_element_test.cpp b/test/unit/core/configuration/pipeable_config_element_test.cpp index f4d35e4e10..c209e6b1f2 100644 --- a/test/unit/core/configuration/pipeable_config_element_test.cpp +++ b/test/unit/core/configuration/pipeable_config_element_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/configuration/pipeable_config_element_test_template.hpp b/test/unit/core/configuration/pipeable_config_element_test_template.hpp index 7bd5401d55..38fcf167ab 100644 --- a/test/unit/core/configuration/pipeable_config_element_test_template.hpp +++ b/test/unit/core/configuration/pipeable_config_element_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause // This file can be used to test the basic functionality of a configuration element diff --git a/test/unit/core/debug_stream_test.cpp b/test/unit/core/debug_stream_test.cpp index 902e7d97cd..c40fb98ba2 100644 --- a/test/unit/core/debug_stream_test.cpp +++ b/test/unit/core/debug_stream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/detail/CMakeLists.txt b/test/unit/core/detail/CMakeLists.txt index 598c7d052c..903d2b1b01 100644 --- a/test/unit/core/detail/CMakeLists.txt +++ b/test/unit/core/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (debug_stream_type_tuple_alignment_test.cpp) seqan3_test (deferred_crtp_base_test.cpp) seqan3_test (iterator_traits_test.cpp) diff --git a/test/unit/core/detail/debug_stream_type_tuple_alignment_test.cpp b/test/unit/core/detail/debug_stream_type_tuple_alignment_test.cpp index ad167989d7..45a2e8b2e5 100644 --- a/test/unit/core/detail/debug_stream_type_tuple_alignment_test.cpp +++ b/test/unit/core/detail/debug_stream_type_tuple_alignment_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/detail/deferred_crtp_base_test.cpp b/test/unit/core/detail/deferred_crtp_base_test.cpp index 237fbac95a..e24d5235bc 100644 --- a/test/unit/core/detail/deferred_crtp_base_test.cpp +++ b/test/unit/core/detail/deferred_crtp_base_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/detail/iterator_traits_test.cpp b/test/unit/core/detail/iterator_traits_test.cpp index 9e7dfabf3d..c1c920d431 100644 --- a/test/unit/core/detail/iterator_traits_test.cpp +++ b/test/unit/core/detail/iterator_traits_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/detail/strong_type_debug_stream_test.cpp b/test/unit/core/detail/strong_type_debug_stream_test.cpp index cc5515c29b..59b1ff5774 100644 --- a/test/unit/core/detail/strong_type_debug_stream_test.cpp +++ b/test/unit/core/detail/strong_type_debug_stream_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/detail/strong_type_test.cpp b/test/unit/core/detail/strong_type_test.cpp index e9074ff42e..b5d936a945 100644 --- a/test/unit/core/detail/strong_type_test.cpp +++ b/test/unit/core/detail/strong_type_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/detail/template_inspection_test.cpp b/test/unit/core/detail/template_inspection_test.cpp index 6c23386a30..d0aa427a17 100644 --- a/test/unit/core/detail/template_inspection_test.cpp +++ b/test/unit/core/detail/template_inspection_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/detail/transfer_type_modifier_onto_test.cpp b/test/unit/core/detail/transfer_type_modifier_onto_test.cpp index f31b9ba12b..35c2cca615 100644 --- a/test/unit/core/detail/transfer_type_modifier_onto_test.cpp +++ b/test/unit/core/detail/transfer_type_modifier_onto_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/range/CMakeLists.txt b/test/unit/core/range/CMakeLists.txt index a5c4993b73..9acef27b47 100644 --- a/test/unit/core/range/CMakeLists.txt +++ b/test/unit/core/range/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (range_iterator_test.cpp) diff --git a/test/unit/core/range/detail/CMakeLists.txt b/test/unit/core/range/detail/CMakeLists.txt index bed52bf538..de029c501e 100644 --- a/test/unit/core/range/detail/CMakeLists.txt +++ b/test/unit/core/range/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (adaptor_base_test.cpp) seqan3_test (adaptor_for_view_without_args_test.cpp) seqan3_test (inherited_iterator_base_test.cpp) diff --git a/test/unit/core/range/detail/adaptor_base_test.cpp b/test/unit/core/range/detail/adaptor_base_test.cpp index 0b141a6142..6ce5143262 100644 --- a/test/unit/core/range/detail/adaptor_base_test.cpp +++ b/test/unit/core/range/detail/adaptor_base_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/range/detail/adaptor_for_view_without_args_test.cpp b/test/unit/core/range/detail/adaptor_for_view_without_args_test.cpp index 460fab223c..6d68bc5417 100644 --- a/test/unit/core/range/detail/adaptor_for_view_without_args_test.cpp +++ b/test/unit/core/range/detail/adaptor_for_view_without_args_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/range/detail/inherited_iterator_base_test.cpp b/test/unit/core/range/detail/inherited_iterator_base_test.cpp index 6e619ed6ea..d1dc9aa8f4 100644 --- a/test/unit/core/range/detail/inherited_iterator_base_test.cpp +++ b/test/unit/core/range/detail/inherited_iterator_base_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/range/detail/random_access_iterator_test.cpp b/test/unit/core/range/detail/random_access_iterator_test.cpp index a602827376..2eb4d1dcf7 100644 --- a/test/unit/core/range/detail/random_access_iterator_test.cpp +++ b/test/unit/core/range/detail/random_access_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/core/range/range_iterator_test.cpp b/test/unit/core/range/range_iterator_test.cpp index e589c5159a..e8dc323cc0 100644 --- a/test/unit/core/range/range_iterator_test.cpp +++ b/test/unit/core/range/range_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/CMakeLists.txt b/test/unit/io/CMakeLists.txt index 26172d207c..24c9405d7e 100644 --- a/test/unit/io/CMakeLists.txt +++ b/test/unit/io/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (concept_test.cpp) diff --git a/test/unit/io/concept_test.cpp b/test/unit/io/concept_test.cpp index 8aaf79240b..97b85b20ed 100644 --- a/test/unit/io/concept_test.cpp +++ b/test/unit/io/concept_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/CMakeLists.txt b/test/unit/io/detail/CMakeLists.txt index baa6799f49..8f5bebf172 100644 --- a/test/unit/io/detail/CMakeLists.txt +++ b/test/unit/io/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (detail_record_test.cpp) seqan3_test (ignore_output_iterator_test.cpp) seqan3_test (in_file_iterator_test.cpp) diff --git a/test/unit/io/detail/detail_record_test.cpp b/test/unit/io/detail/detail_record_test.cpp index c1a8a0254c..7d6a0f0018 100644 --- a/test/unit/io/detail/detail_record_test.cpp +++ b/test/unit/io/detail/detail_record_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/ignore_output_iterator_test.cpp b/test/unit/io/detail/ignore_output_iterator_test.cpp index 985fd5f395..a065c72b0f 100644 --- a/test/unit/io/detail/ignore_output_iterator_test.cpp +++ b/test/unit/io/detail/ignore_output_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/in_file_iterator_test.cpp b/test/unit/io/detail/in_file_iterator_test.cpp index f54c1cca84..7a2d530d12 100644 --- a/test/unit/io/detail/in_file_iterator_test.cpp +++ b/test/unit/io/detail/in_file_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/magic_header_test.cpp b/test/unit/io/detail/magic_header_test.cpp index 5cb7f51393..dd1b700702 100644 --- a/test/unit/io/detail/magic_header_test.cpp +++ b/test/unit/io/detail/magic_header_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/misc_output_test.cpp b/test/unit/io/detail/misc_output_test.cpp index 1cecc07643..9c408ba4a8 100644 --- a/test/unit/io/detail/misc_output_test.cpp +++ b/test/unit/io/detail/misc_output_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/misc_test.cpp b/test/unit/io/detail/misc_test.cpp index 5cdcb3a6f9..ab60bf212c 100644 --- a/test/unit/io/detail/misc_test.cpp +++ b/test/unit/io/detail/misc_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/out_file_iterator_test.cpp b/test/unit/io/detail/out_file_iterator_test.cpp index 16ec2ac299..54c599e42d 100644 --- a/test/unit/io/detail/out_file_iterator_test.cpp +++ b/test/unit/io/detail/out_file_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/record_like_test.cpp b/test/unit/io/detail/record_like_test.cpp index 85f2c40464..ef85ac039a 100644 --- a/test/unit/io/detail/record_like_test.cpp +++ b/test/unit/io/detail/record_like_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/detail/safe_filesystem_entry_test.cpp b/test/unit/io/detail/safe_filesystem_entry_test.cpp index 7f5b414071..bb2cca736f 100644 --- a/test/unit/io/detail/safe_filesystem_entry_test.cpp +++ b/test/unit/io/detail/safe_filesystem_entry_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/record_test.cpp b/test/unit/io/record_test.cpp index 5dede3aba7..dc90b6a154 100644 --- a/test/unit/io/record_test.cpp +++ b/test/unit/io/record_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/CMakeLists.txt b/test/unit/io/sam_file/CMakeLists.txt index a7a655cf10..0f30ac75ad 100644 --- a/test/unit/io/sam_file/CMakeLists.txt +++ b/test/unit/io/sam_file/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (format_bam_test.cpp CYCLIC_DEPENDING_INCLUDES include-seqan3-io-sam_file-format_sam.hpp) seqan3_test (format_sam_test.cpp CYCLIC_DEPENDING_INCLUDES include-seqan3-io-sam_file-format_bam.hpp) seqan3_test (sam_file_input_test.cpp) diff --git a/test/unit/io/sam_file/format_bam_test.cpp b/test/unit/io/sam_file/format_bam_test.cpp index 57f2430eea..aeb88f084c 100644 --- a/test/unit/io/sam_file/format_bam_test.cpp +++ b/test/unit/io/sam_file/format_bam_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/format_sam_test.cpp b/test/unit/io/sam_file/format_sam_test.cpp index 66683ce3b9..c68d9ee5b8 100644 --- a/test/unit/io/sam_file/format_sam_test.cpp +++ b/test/unit/io/sam_file/format_sam_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/sam_file_format_test_template.hpp b/test/unit/io/sam_file/sam_file_format_test_template.hpp index 516b04021d..c207b8bf86 100644 --- a/test/unit/io/sam_file/sam_file_format_test_template.hpp +++ b/test/unit/io/sam_file/sam_file_format_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/sam_file_input_test.cpp b/test/unit/io/sam_file/sam_file_input_test.cpp index aaa25e86ab..cef5c872b3 100644 --- a/test/unit/io/sam_file/sam_file_input_test.cpp +++ b/test/unit/io/sam_file/sam_file_input_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/sam_file_output_test.cpp b/test/unit/io/sam_file/sam_file_output_test.cpp index 68370156d3..e8f2d96986 100644 --- a/test/unit/io/sam_file/sam_file_output_test.cpp +++ b/test/unit/io/sam_file/sam_file_output_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/sam_file_record_test.cpp b/test/unit/io/sam_file/sam_file_record_test.cpp index 142a1b148a..f7f4d8e569 100644 --- a/test/unit/io/sam_file/sam_file_record_test.cpp +++ b/test/unit/io/sam_file/sam_file_record_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/sam_file_seek_test.cpp b/test/unit/io/sam_file/sam_file_seek_test.cpp index 53e6757907..3ab18cd324 100644 --- a/test/unit/io/sam_file/sam_file_seek_test.cpp +++ b/test/unit/io/sam_file/sam_file_seek_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/sam_tag_dictionary_test.cpp b/test/unit/io/sam_file/sam_tag_dictionary_test.cpp index 062eedcade..3a7d05e006 100644 --- a/test/unit/io/sam_file/sam_tag_dictionary_test.cpp +++ b/test/unit/io/sam_file/sam_tag_dictionary_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sam_file/simple_three_verbose_reads.bam.license b/test/unit/io/sam_file/simple_three_verbose_reads.bam.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/test/unit/io/sam_file/simple_three_verbose_reads.bam.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/test/unit/io/sam_file/simple_three_verbose_reads.bam.note b/test/unit/io/sam_file/simple_three_verbose_reads.bam.note index 116a955445..12d0540220 100644 --- a/test/unit/io/sam_file/simple_three_verbose_reads.bam.note +++ b/test/unit/io/sam_file/simple_three_verbose_reads.bam.note @@ -1,3 +1,8 @@ + + This BAM File is special crafted as it consists of 5 BGZF blocks 1. Block is the BAM-Header diff --git a/test/unit/io/sam_file/simple_three_verbose_reads.sam.license b/test/unit/io/sam_file/simple_three_verbose_reads.sam.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/test/unit/io/sam_file/simple_three_verbose_reads.sam.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/test/unit/io/sequence_file/CMakeLists.txt b/test/unit/io/sequence_file/CMakeLists.txt index 388cf51018..dc7e018dde 100644 --- a/test/unit/io/sequence_file/CMakeLists.txt +++ b/test/unit/io/sequence_file/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (sequence_file_input_test.cpp) seqan3_test (sequence_file_integration_test.cpp) seqan3_test (sequence_file_integration_no_performance_test.cpp) diff --git a/test/unit/io/sequence_file/sequence_file_format_embl_test.cpp b/test/unit/io/sequence_file/sequence_file_format_embl_test.cpp index a9e8adfb10..ab6c1a5466 100644 --- a/test/unit/io/sequence_file/sequence_file_format_embl_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_format_embl_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_format_fasta_no_performance_test.cpp b/test/unit/io/sequence_file/sequence_file_format_fasta_no_performance_test.cpp index 18bc2f1375..8ca2a68251 100644 --- a/test/unit/io/sequence_file/sequence_file_format_fasta_no_performance_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_format_fasta_no_performance_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /* This file includes the same unit tests as sequence_file_format_fasta_test.cpp * but sets the `SEQAN3_WORKAROUND_VIEW_PERFORMANCE` variable first. diff --git a/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp b/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp index 76e031dabf..921be4fa7f 100644 --- a/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_format_fastq_no_performance_test.cpp b/test/unit/io/sequence_file/sequence_file_format_fastq_no_performance_test.cpp index d2a77ba6ea..d1d7f7f755 100644 --- a/test/unit/io/sequence_file/sequence_file_format_fastq_no_performance_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_format_fastq_no_performance_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /* This file includes the same unit tests as sequence_file_format_fastq_test.cpp * but sets the `SEQAN3_WORKAROUND_VIEW_PERFORMANCE` variable first. diff --git a/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp b/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp index 4bec7f732f..9874f28207 100644 --- a/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_format_genbank_test.cpp b/test/unit/io/sequence_file/sequence_file_format_genbank_test.cpp index 4eb1c318ee..4c5ec7784d 100644 --- a/test/unit/io/sequence_file/sequence_file_format_genbank_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_format_genbank_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_format_sam_test.cpp b/test/unit/io/sequence_file/sequence_file_format_sam_test.cpp index 900763f95b..f419e03eb6 100644 --- a/test/unit/io/sequence_file/sequence_file_format_sam_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_format_sam_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_format_test_template.hpp b/test/unit/io/sequence_file/sequence_file_format_test_template.hpp index 77bb43385a..9c1ae5224f 100644 --- a/test/unit/io/sequence_file/sequence_file_format_test_template.hpp +++ b/test/unit/io/sequence_file/sequence_file_format_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_input_test.cpp b/test/unit/io/sequence_file/sequence_file_input_test.cpp index 7e81866254..8a10471f8c 100644 --- a/test/unit/io/sequence_file/sequence_file_input_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_input_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_integration_no_performance_test.cpp b/test/unit/io/sequence_file/sequence_file_integration_no_performance_test.cpp index 2e8c01fcd6..3566152d61 100644 --- a/test/unit/io/sequence_file/sequence_file_integration_no_performance_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_integration_no_performance_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /* This file includes the same unit tests as sequence_file_integration_test.cpp * but sets the `SEQAN3_WORKAROUND_VIEW_PERFORMANCE` variable first. diff --git a/test/unit/io/sequence_file/sequence_file_integration_test.cpp b/test/unit/io/sequence_file/sequence_file_integration_test.cpp index 83a344bd3a..675bd7a572 100644 --- a/test/unit/io/sequence_file/sequence_file_integration_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_integration_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_output_test.cpp b/test/unit/io/sequence_file/sequence_file_output_test.cpp index 9bf5919652..01d57fd0c9 100644 --- a/test/unit/io/sequence_file/sequence_file_output_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_output_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_record_test.cpp b/test/unit/io/sequence_file/sequence_file_record_test.cpp index 17216c9e49..20aa35affd 100644 --- a/test/unit/io/sequence_file/sequence_file_record_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_record_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/sequence_file_seek_test.cpp b/test/unit/io/sequence_file/sequence_file_seek_test.cpp index e820af737a..063b156795 100644 --- a/test/unit/io/sequence_file/sequence_file_seek_test.cpp +++ b/test/unit/io/sequence_file/sequence_file_seek_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/sequence_file/standard.embl.license b/test/unit/io/sequence_file/standard.embl.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/test/unit/io/sequence_file/standard.embl.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/test/unit/io/sequence_file/standard.fasta.license b/test/unit/io/sequence_file/standard.fasta.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/test/unit/io/sequence_file/standard.fasta.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/test/unit/io/sequence_file/standard.fastq.license b/test/unit/io/sequence_file/standard.fastq.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/test/unit/io/sequence_file/standard.fastq.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/test/unit/io/sequence_file/standard.genbank.license b/test/unit/io/sequence_file/standard.genbank.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/test/unit/io/sequence_file/standard.genbank.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/test/unit/io/sequence_file/standard.sam.license b/test/unit/io/sequence_file/standard.sam.license new file mode 100644 index 0000000000..70b01de154 --- /dev/null +++ b/test/unit/io/sequence_file/standard.sam.license @@ -0,0 +1,3 @@ +SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +SPDX-License-Identifier: CC-BY-4.0 diff --git a/test/unit/io/stream/CMakeLists.txt b/test/unit/io/stream/CMakeLists.txt index 9ddf96d30c..eb99a605f5 100644 --- a/test/unit/io/stream/CMakeLists.txt +++ b/test/unit/io/stream/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () diff --git a/test/unit/io/stream/detail/CMakeLists.txt b/test/unit/io/stream/detail/CMakeLists.txt index 9f4a8c48ba..58fb2c4434 100644 --- a/test/unit/io/stream/detail/CMakeLists.txt +++ b/test/unit/io/stream/detail/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (fast_istreambuf_iterator_test.cpp) seqan3_test (fast_ostreambuf_iterator_test.cpp) diff --git a/test/unit/io/stream/detail/fast_istreambuf_iterator_test.cpp b/test/unit/io/stream/detail/fast_istreambuf_iterator_test.cpp index b969a83546..274959ebe4 100644 --- a/test/unit/io/stream/detail/fast_istreambuf_iterator_test.cpp +++ b/test/unit/io/stream/detail/fast_istreambuf_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/stream/detail/fast_ostreambuf_iterator_test.cpp b/test/unit/io/stream/detail/fast_ostreambuf_iterator_test.cpp index 3d4cc00739..02f46b12b3 100644 --- a/test/unit/io/stream/detail/fast_ostreambuf_iterator_test.cpp +++ b/test/unit/io/stream/detail/fast_ostreambuf_iterator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/stream/istream_test_template.hpp b/test/unit/io/stream/istream_test_template.hpp index 648a9e5927..c617de0c87 100644 --- a/test/unit/io/stream/istream_test_template.hpp +++ b/test/unit/io/stream/istream_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/stream/ostream_test_template.hpp b/test/unit/io/stream/ostream_test_template.hpp index 5df6ce8638..d7dfbc003f 100644 --- a/test/unit/io/stream/ostream_test_template.hpp +++ b/test/unit/io/stream/ostream_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/structure_file/CMakeLists.txt b/test/unit/io/structure_file/CMakeLists.txt index b722ccb43f..ac3e2e1ce6 100644 --- a/test/unit/io/structure_file/CMakeLists.txt +++ b/test/unit/io/structure_file/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (format_vienna_test.cpp) seqan3_test (structure_file_input_test.cpp) seqan3_test (structure_file_output_test.cpp) diff --git a/test/unit/io/structure_file/format_vienna_test.cpp b/test/unit/io/structure_file/format_vienna_test.cpp index 9c9529f512..a215e96efc 100644 --- a/test/unit/io/structure_file/format_vienna_test.cpp +++ b/test/unit/io/structure_file/format_vienna_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/structure_file/structure_file_input_test.cpp b/test/unit/io/structure_file/structure_file_input_test.cpp index eb5c33367d..aeee4928a9 100644 --- a/test/unit/io/structure_file/structure_file_input_test.cpp +++ b/test/unit/io/structure_file/structure_file_input_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/structure_file/structure_file_output_test.cpp b/test/unit/io/structure_file/structure_file_output_test.cpp index 45922c260f..2178058697 100644 --- a/test/unit/io/structure_file/structure_file_output_test.cpp +++ b/test/unit/io/structure_file/structure_file_output_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/structure_file/structure_file_record_test.cpp b/test/unit/io/structure_file/structure_file_record_test.cpp index 3122197e47..c7bfaec0f7 100644 --- a/test/unit/io/structure_file/structure_file_record_test.cpp +++ b/test/unit/io/structure_file/structure_file_record_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/views/CMakeLists.txt b/test/unit/io/views/CMakeLists.txt index 1c46aa8483..9c501a848a 100644 --- a/test/unit/io/views/CMakeLists.txt +++ b/test/unit/io/views/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (async_input_buffer_test.cpp) diff --git a/test/unit/io/views/async_input_buffer_test.cpp b/test/unit/io/views/async_input_buffer_test.cpp index f2c1a31930..fbfdf6db43 100644 --- a/test/unit/io/views/async_input_buffer_test.cpp +++ b/test/unit/io/views/async_input_buffer_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/views/detail/CMakeLists.txt b/test/unit/io/views/detail/CMakeLists.txt index 99f193910b..3f1a9be374 100644 --- a/test/unit/io/views/detail/CMakeLists.txt +++ b/test/unit/io/views/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (istreambuf_view_test.cpp) seqan3_test (take_exactly_view_test.cpp) seqan3_test (take_line_view_test.cpp) diff --git a/test/unit/io/views/detail/istreambuf_view_test.cpp b/test/unit/io/views/detail/istreambuf_view_test.cpp index 4c4f8db7aa..97b6141952 100644 --- a/test/unit/io/views/detail/istreambuf_view_test.cpp +++ b/test/unit/io/views/detail/istreambuf_view_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/views/detail/take_exactly_view_test.cpp b/test/unit/io/views/detail/take_exactly_view_test.cpp index e41342cfca..1eef3fad5d 100644 --- a/test/unit/io/views/detail/take_exactly_view_test.cpp +++ b/test/unit/io/views/detail/take_exactly_view_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/views/detail/take_line_view_test.cpp b/test/unit/io/views/detail/take_line_view_test.cpp index bc9f899a04..c54d03a265 100644 --- a/test/unit/io/views/detail/take_line_view_test.cpp +++ b/test/unit/io/views/detail/take_line_view_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/views/detail/take_until_take_exactly_view_intergration_test.cpp b/test/unit/io/views/detail/take_until_take_exactly_view_intergration_test.cpp index 6160910aeb..75787c3afe 100644 --- a/test/unit/io/views/detail/take_until_take_exactly_view_intergration_test.cpp +++ b/test/unit/io/views/detail/take_until_take_exactly_view_intergration_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/io/views/detail/take_until_view_test.cpp b/test/unit/io/views/detail/take_until_view_test.cpp index 8f34f70146..dc81de7246 100644 --- a/test/unit/io/views/detail/take_until_view_test.cpp +++ b/test/unit/io/views/detail/take_until_view_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/range/CMakeLists.txt b/test/unit/range/CMakeLists.txt index 9ddf96d30c..eb99a605f5 100644 --- a/test/unit/range/CMakeLists.txt +++ b/test/unit/range/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () diff --git a/test/unit/range/iterator_test_template.hpp b/test/unit/range/iterator_test_template.hpp index 0e2d7d7eab..376450faca 100644 --- a/test/unit/range/iterator_test_template.hpp +++ b/test/unit/range/iterator_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/range/range_test_template.hpp b/test/unit/range/range_test_template.hpp index 4065e1ef1e..8cb6954bcb 100644 --- a/test/unit/range/range_test_template.hpp +++ b/test/unit/range/range_test_template.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/search/CMakeLists.txt b/test/unit/search/CMakeLists.txt index afb1d5888d..234b4f64af 100644 --- a/test/unit/search/CMakeLists.txt +++ b/test/unit/search/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (sdsl_index_test.cpp) diff --git a/test/unit/search/configuration/CMakeLists.txt b/test/unit/search/configuration/CMakeLists.txt index e133dc367c..ee8db0cb69 100644 --- a/test/unit/search/configuration/CMakeLists.txt +++ b/test/unit/search/configuration/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (hit_test.cpp) seqan3_test (on_result_test.cpp) seqan3_test (parallel_test.cpp) diff --git a/test/unit/search/configuration/hit_test.cpp b/test/unit/search/configuration/hit_test.cpp index 4d93770870..12b5440432 100644 --- a/test/unit/search/configuration/hit_test.cpp +++ b/test/unit/search/configuration/hit_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/configuration/on_result_test.cpp b/test/unit/search/configuration/on_result_test.cpp index df3f5a5c84..b3b2244ef3 100644 --- a/test/unit/search/configuration/on_result_test.cpp +++ b/test/unit/search/configuration/on_result_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/configuration/parallel_test.cpp b/test/unit/search/configuration/parallel_test.cpp index 1989ba8e14..72b827f67e 100644 --- a/test/unit/search/configuration/parallel_test.cpp +++ b/test/unit/search/configuration/parallel_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/configuration/search_config_common_test.cpp b/test/unit/search/configuration/search_config_common_test.cpp index 3af238e079..396afee2e9 100644 --- a/test/unit/search/configuration/search_config_common_test.cpp +++ b/test/unit/search/configuration/search_config_common_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/dream_index/CMakeLists.txt b/test/unit/search/dream_index/CMakeLists.txt index c3efe44f9b..1fd487da1e 100644 --- a/test/unit/search/dream_index/CMakeLists.txt +++ b/test/unit/search/dream_index/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (interleaved_bloom_filter_test.cpp) diff --git a/test/unit/search/dream_index/interleaved_bloom_filter_test.cpp b/test/unit/search/dream_index/interleaved_bloom_filter_test.cpp index 71ba36238d..9e30022fa0 100644 --- a/test/unit/search/dream_index/interleaved_bloom_filter_test.cpp +++ b/test/unit/search/dream_index/interleaved_bloom_filter_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index/CMakeLists.txt b/test/unit/search/fm_index/CMakeLists.txt index 922893471a..53095f89ba 100644 --- a/test/unit/search/fm_index/CMakeLists.txt +++ b/test/unit/search/fm_index/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (fm_index_dna4_test.cpp) seqan3_test (bi_fm_index_dna4_test.cpp) seqan3_test (bi_fm_index_aa27_test.cpp) diff --git a/test/unit/search/fm_index/bi_fm_index_aa27_test.cpp b/test/unit/search/fm_index/bi_fm_index_aa27_test.cpp index 3202ff3a98..8c4ffcfc5b 100644 --- a/test/unit/search/fm_index/bi_fm_index_aa27_test.cpp +++ b/test/unit/search/fm_index/bi_fm_index_aa27_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index/bi_fm_index_char_test.cpp b/test/unit/search/fm_index/bi_fm_index_char_test.cpp index bc08f13d2a..e1d11c27e3 100644 --- a/test/unit/search/fm_index/bi_fm_index_char_test.cpp +++ b/test/unit/search/fm_index/bi_fm_index_char_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include "fm_index_collection_test_template.hpp" #include "fm_index_test_template.hpp" diff --git a/test/unit/search/fm_index/bi_fm_index_dna4_test.cpp b/test/unit/search/fm_index/bi_fm_index_dna4_test.cpp index 47779c505a..45601a8c4c 100644 --- a/test/unit/search/fm_index/bi_fm_index_dna4_test.cpp +++ b/test/unit/search/fm_index/bi_fm_index_dna4_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index/fm_index_collection_test_template.hpp b/test/unit/search/fm_index/fm_index_collection_test_template.hpp index a882bed06d..08a723b46d 100644 --- a/test/unit/search/fm_index/fm_index_collection_test_template.hpp +++ b/test/unit/search/fm_index/fm_index_collection_test_template.hpp @@ -1,9 +1,6 @@ -/// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index/fm_index_dna4_test.cpp b/test/unit/search/fm_index/fm_index_dna4_test.cpp index d0398ca7dc..856708a199 100644 --- a/test/unit/search/fm_index/fm_index_dna4_test.cpp +++ b/test/unit/search/fm_index/fm_index_dna4_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/search/fm_index/fm_index_test_template.hpp b/test/unit/search/fm_index/fm_index_test_template.hpp index b2864bb768..7f31448940 100644 --- a/test/unit/search/fm_index/fm_index_test_template.hpp +++ b/test/unit/search/fm_index/fm_index_test_template.hpp @@ -1,9 +1,6 @@ -/// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index_cursor/CMakeLists.txt b/test/unit/search/fm_index_cursor/CMakeLists.txt index 2838b617a9..d5bb3f5a52 100644 --- a/test/unit/search/fm_index_cursor/CMakeLists.txt +++ b/test/unit/search/fm_index_cursor/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (fm_index_cursor_test.cpp) seqan3_test (fm_index_cursor_collection_test.cpp) seqan3_test (bi_fm_index_cursor_test.cpp) diff --git a/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test.cpp b/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test.cpp index 51b0318f11..378aa47ce5 100644 --- a/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test.cpp +++ b/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test_template.hpp b/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test_template.hpp index 613f2e3fc4..81b437d0cf 100644 --- a/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test_template.hpp +++ b/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test_template.hpp @@ -1,9 +1,6 @@ -/// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test.cpp b/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test.cpp index 9545b9611f..3432dddb80 100644 --- a/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test.cpp +++ b/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test_template.hpp b/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test_template.hpp index 5e00fed309..a5c4b2504b 100644 --- a/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test_template.hpp +++ b/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test_template.hpp @@ -1,9 +1,6 @@ -/// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test.cpp b/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test.cpp index 5abee1e63d..be66654ebb 100644 --- a/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test.cpp +++ b/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test_template.hpp b/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test_template.hpp index 5b80df314e..11012e3172 100644 --- a/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test_template.hpp +++ b/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test_template.hpp @@ -1,9 +1,6 @@ -/// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/fm_index_cursor/fm_index_cursor_test.cpp b/test/unit/search/fm_index_cursor/fm_index_cursor_test.cpp index 2268a44e3f..135734a7f8 100644 --- a/test/unit/search/fm_index_cursor/fm_index_cursor_test.cpp +++ b/test/unit/search/fm_index_cursor/fm_index_cursor_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include #include diff --git a/test/unit/search/fm_index_cursor/fm_index_cursor_test_template.hpp b/test/unit/search/fm_index_cursor/fm_index_cursor_test_template.hpp index 8564b1df64..0db5be80ad 100644 --- a/test/unit/search/fm_index_cursor/fm_index_cursor_test_template.hpp +++ b/test/unit/search/fm_index_cursor/fm_index_cursor_test_template.hpp @@ -1,9 +1,6 @@ -/// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/helper.hpp b/test/unit/search/helper.hpp index c4b550b3d1..0c364a1cf5 100644 --- a/test/unit/search/helper.hpp +++ b/test/unit/search/helper.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/search/helper_search_scheme.hpp b/test/unit/search/helper_search_scheme.hpp index 6c1d5db6d0..647889622a 100644 --- a/test/unit/search/helper_search_scheme.hpp +++ b/test/unit/search/helper_search_scheme.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #pragma once diff --git a/test/unit/search/kmer_index/CMakeLists.txt b/test/unit/search/kmer_index/CMakeLists.txt index efe3f0a819..5eed0ea5f9 100644 --- a/test/unit/search/kmer_index/CMakeLists.txt +++ b/test/unit/search/kmer_index/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (shape_test.cpp) diff --git a/test/unit/search/kmer_index/shape_test.cpp b/test/unit/search/kmer_index/shape_test.cpp index 27f3b6c7d3..131b4932d7 100644 --- a/test/unit/search/kmer_index/shape_test.cpp +++ b/test/unit/search/kmer_index/shape_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/sdsl_index_test.cpp b/test/unit/search/sdsl_index_test.cpp index 29042c51bb..dc22eec389 100644 --- a/test/unit/search/sdsl_index_test.cpp +++ b/test/unit/search/sdsl_index_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/search_collection_test.cpp b/test/unit/search/search_collection_test.cpp index 0a7aeb7011..23e98bc043 100644 --- a/test/unit/search/search_collection_test.cpp +++ b/test/unit/search/search_collection_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/search_configuration_test.cpp b/test/unit/search/search_configuration_test.cpp index 87b22457e9..d054c4c887 100644 --- a/test/unit/search/search_configuration_test.cpp +++ b/test/unit/search/search_configuration_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/search_scheme_algorithm_test.cpp b/test/unit/search/search_scheme_algorithm_test.cpp index 6af90c2cd3..38bb772ef5 100644 --- a/test/unit/search/search_scheme_algorithm_test.cpp +++ b/test/unit/search/search_scheme_algorithm_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/search_scheme_test.cpp b/test/unit/search/search_scheme_test.cpp index a861fe531e..387fde7311 100644 --- a/test/unit/search/search_scheme_test.cpp +++ b/test/unit/search/search_scheme_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/search_test.cpp b/test/unit/search/search_test.cpp index c22417120a..1cd5a0697d 100644 --- a/test/unit/search/search_test.cpp +++ b/test/unit/search/search_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/views/CMakeLists.txt b/test/unit/search/views/CMakeLists.txt index 4625270d01..cf5b4a85cb 100644 --- a/test/unit/search/views/CMakeLists.txt +++ b/test/unit/search/views/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (kmer_hash_test.cpp) seqan3_test (minimiser_hash_test.cpp) seqan3_test (minimiser_test.cpp) diff --git a/test/unit/search/views/kmer_hash_test.cpp b/test/unit/search/views/kmer_hash_test.cpp index 2ab1d46f0e..0c6fa58411 100644 --- a/test/unit/search/views/kmer_hash_test.cpp +++ b/test/unit/search/views/kmer_hash_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/views/minimiser_hash_test.cpp b/test/unit/search/views/minimiser_hash_test.cpp index df32767506..b34d65907a 100644 --- a/test/unit/search/views/minimiser_hash_test.cpp +++ b/test/unit/search/views/minimiser_hash_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/search/views/minimiser_test.cpp b/test/unit/search/views/minimiser_test.cpp index 23b0f01402..2fb82e6cc0 100644 --- a/test/unit/search/views/minimiser_test.cpp +++ b/test/unit/search/views/minimiser_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/std/CMakeLists.txt b/test/unit/std/CMakeLists.txt index e19ddf6d48..03bb94477b 100644 --- a/test/unit/std/CMakeLists.txt +++ b/test/unit/std/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (charconv_int_test.cpp) seqan3_test (charconv_float_test.cpp) diff --git a/test/unit/std/charconv_float_test.cpp b/test/unit/std/charconv_float_test.cpp index 0214058590..5e45fd917d 100644 --- a/test/unit/std/charconv_float_test.cpp +++ b/test/unit/std/charconv_float_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/std/charconv_int_test.cpp b/test/unit/std/charconv_int_test.cpp index 5738916205..ad0b35ee73 100644 --- a/test/unit/std/charconv_int_test.cpp +++ b/test/unit/std/charconv_int_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/test/CMakeLists.txt b/test/unit/test/CMakeLists.txt index 47019b1130..cff2f2eb93 100644 --- a/test/unit/test/CMakeLists.txt +++ b/test/unit/test/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (expect_range_eq_test.cpp) seqan3_test (expect_same_type_test.cpp) seqan3_test (file_access_test.cpp) diff --git a/test/unit/test/expect_range_eq_test.cpp b/test/unit/test/expect_range_eq_test.cpp index 0b20ede4b9..bc160cc8ad 100644 --- a/test/unit/test/expect_range_eq_test.cpp +++ b/test/unit/test/expect_range_eq_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include // provides test utility to test google test itself #include diff --git a/test/unit/test/expect_same_type_test.cpp b/test/unit/test/expect_same_type_test.cpp index a975812557..abb56a77ec 100644 --- a/test/unit/test/expect_same_type_test.cpp +++ b/test/unit/test/expect_same_type_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include // provides test utility to test google test itself #include diff --git a/test/unit/test/file_access_test.cpp b/test/unit/test/file_access_test.cpp index b7b47c2dc3..5b079241b2 100644 --- a/test/unit/test/file_access_test.cpp +++ b/test/unit/test/file_access_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/test/pretty_printing_test.cpp b/test/unit/test/pretty_printing_test.cpp index f618ec95cf..9e6e38b75c 100644 --- a/test/unit/test/pretty_printing_test.cpp +++ b/test/unit/test/pretty_printing_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/test/sandboxed_path_test.cpp b/test/unit/test/sandboxed_path_test.cpp index f9ec63b18c..e0ab4b8234 100644 --- a/test/unit/test/sandboxed_path_test.cpp +++ b/test/unit/test/sandboxed_path_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/test/seqan2_test.cpp b/test/unit/test/seqan2_test.cpp index ef54d92d96..d764b63d72 100644 --- a/test/unit/test/seqan2_test.cpp +++ b/test/unit/test/seqan2_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/test/sequence_generator_test.cpp b/test/unit/test/sequence_generator_test.cpp index 04cd199c06..f55874d98c 100644 --- a/test/unit/test/sequence_generator_test.cpp +++ b/test/unit/test/sequence_generator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/test/tmp_directory_test.cpp b/test/unit/test/tmp_directory_test.cpp index ff95fef16b..92fd8b96ee 100644 --- a/test/unit/test/tmp_directory_test.cpp +++ b/test/unit/test/tmp_directory_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/CMakeLists.txt b/test/unit/utility/CMakeLists.txt index 5c07f01a15..a7a210b5c2 100644 --- a/test/unit/utility/CMakeLists.txt +++ b/test/unit/utility/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (math_test.cpp) diff --git a/test/unit/utility/bloom_filter/CMakeLists.txt b/test/unit/utility/bloom_filter/CMakeLists.txt index 1f5202335e..22489668e1 100644 --- a/test/unit/utility/bloom_filter/CMakeLists.txt +++ b/test/unit/utility/bloom_filter/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (bloom_filter_test.cpp) diff --git a/test/unit/utility/bloom_filter/bloom_filter_test.cpp b/test/unit/utility/bloom_filter/bloom_filter_test.cpp index 612683cf39..25c1a76dfb 100644 --- a/test/unit/utility/bloom_filter/bloom_filter_test.cpp +++ b/test/unit/utility/bloom_filter/bloom_filter_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/char_operations/CMakeLists.txt b/test/unit/utility/char_operations/CMakeLists.txt index 0e1c04c6e8..af30f977b4 100644 --- a/test/unit/utility/char_operations/CMakeLists.txt +++ b/test/unit/utility/char_operations/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (char_operations_predicate_test.cpp) diff --git a/test/unit/utility/char_operations/char_operations_predicate_test.cpp b/test/unit/utility/char_operations/char_operations_predicate_test.cpp index 87d6aa9aea..0f5d25e5ce 100644 --- a/test/unit/utility/char_operations/char_operations_predicate_test.cpp +++ b/test/unit/utility/char_operations/char_operations_predicate_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/container/CMakeLists.txt b/test/unit/utility/container/CMakeLists.txt index db7e7ae7a2..4a1495bc9a 100644 --- a/test/unit/utility/container/CMakeLists.txt +++ b/test/unit/utility/container/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (aligned_allocator_test.cpp) seqan3_test (dynamic_bitset_test.cpp) seqan3_test (small_string_test.cpp) diff --git a/test/unit/utility/container/aligned_allocator_test.cpp b/test/unit/utility/container/aligned_allocator_test.cpp index a57b75ea52..9d14c4669b 100644 --- a/test/unit/utility/container/aligned_allocator_test.cpp +++ b/test/unit/utility/container/aligned_allocator_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/container/dynamic_bitset_test.cpp b/test/unit/utility/container/dynamic_bitset_test.cpp index 36c3a500a3..77d3600308 100644 --- a/test/unit/utility/container/dynamic_bitset_test.cpp +++ b/test/unit/utility/container/dynamic_bitset_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/container/small_string_test.cpp b/test/unit/utility/container/small_string_test.cpp index c11dca3d80..6b006a8d6f 100644 --- a/test/unit/utility/container/small_string_test.cpp +++ b/test/unit/utility/container/small_string_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/container/small_vector_test.cpp b/test/unit/utility/container/small_vector_test.cpp index c6626d1d40..2885779db4 100644 --- a/test/unit/utility/container/small_vector_test.cpp +++ b/test/unit/utility/container/small_vector_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/detail/CMakeLists.txt b/test/unit/utility/detail/CMakeLists.txt index f3c2ea1141..f0861c779d 100644 --- a/test/unit/utility/detail/CMakeLists.txt +++ b/test/unit/utility/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (bits_of_test.cpp) seqan3_test (convertability_concepts_test.cpp) seqan3_test (integer_traits_test.cpp) diff --git a/test/unit/utility/detail/bits_of_test.cpp b/test/unit/utility/detail/bits_of_test.cpp index 3a53b381f9..f67a7be66c 100644 --- a/test/unit/utility/detail/bits_of_test.cpp +++ b/test/unit/utility/detail/bits_of_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/detail/convertability_concepts_test.cpp b/test/unit/utility/detail/convertability_concepts_test.cpp index 32874a3daa..3b3dbe079d 100644 --- a/test/unit/utility/detail/convertability_concepts_test.cpp +++ b/test/unit/utility/detail/convertability_concepts_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/detail/integer_traits_test.cpp b/test/unit/utility/detail/integer_traits_test.cpp index 5f3f332b46..8cf8f07bae 100644 --- a/test/unit/utility/detail/integer_traits_test.cpp +++ b/test/unit/utility/detail/integer_traits_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/detail/to_little_endian_test.cpp b/test/unit/utility/detail/to_little_endian_test.cpp index 70cb2f1aae..b2adc2d11e 100644 --- a/test/unit/utility/detail/to_little_endian_test.cpp +++ b/test/unit/utility/detail/to_little_endian_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/detail/type_name_as_string_test.cpp b/test/unit/utility/detail/type_name_as_string_test.cpp index 6014247b4c..e5acd476ee 100644 --- a/test/unit/utility/detail/type_name_as_string_test.cpp +++ b/test/unit/utility/detail/type_name_as_string_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/math_test.cpp b/test/unit/utility/math_test.cpp index 5a519c211d..4fb0ad7957 100644 --- a/test/unit/utility/math_test.cpp +++ b/test/unit/utility/math_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/parallel/CMakeLists.txt b/test/unit/utility/parallel/CMakeLists.txt index 9ddf96d30c..eb99a605f5 100644 --- a/test/unit/utility/parallel/CMakeLists.txt +++ b/test/unit/utility/parallel/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () diff --git a/test/unit/utility/parallel/detail/CMakeLists.txt b/test/unit/utility/parallel/detail/CMakeLists.txt index 7bf36c8e10..e374f228ae 100644 --- a/test/unit/utility/parallel/detail/CMakeLists.txt +++ b/test/unit/utility/parallel/detail/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (latch_test.cpp) seqan3_test (reader_writer_manager_test.cpp) diff --git a/test/unit/utility/parallel/detail/latch_test.cpp b/test/unit/utility/parallel/detail/latch_test.cpp index cc17c5f52f..0ed11c0f88 100644 --- a/test/unit/utility/parallel/detail/latch_test.cpp +++ b/test/unit/utility/parallel/detail/latch_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/parallel/detail/reader_writer_manager_test.cpp b/test/unit/utility/parallel/detail/reader_writer_manager_test.cpp index c1983303c8..6139367039 100644 --- a/test/unit/utility/parallel/detail/reader_writer_manager_test.cpp +++ b/test/unit/utility/parallel/detail/reader_writer_manager_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/range/CMakeLists.txt b/test/unit/utility/range/CMakeLists.txt index cfc05b0003..b44e17f37e 100644 --- a/test/unit/utility/range/CMakeLists.txt +++ b/test/unit/utility/range/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (to_test.cpp) diff --git a/test/unit/utility/range/to_test.cpp b/test/unit/utility/range/to_test.cpp index d48a406337..d5ed60a371 100644 --- a/test/unit/utility/range/to_test.cpp +++ b/test/unit/utility/range/to_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/simd/CMakeLists.txt b/test/unit/utility/simd/CMakeLists.txt index 0a37332679..269197c2f5 100644 --- a/test/unit/utility/simd/CMakeLists.txt +++ b/test/unit/utility/simd/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (simd_algorithm_test.cpp) diff --git a/test/unit/utility/simd/detail/CMakeLists.txt b/test/unit/utility/simd/detail/CMakeLists.txt index cef2c3f5bc..b2c4c5d974 100644 --- a/test/unit/utility/simd/detail/CMakeLists.txt +++ b/test/unit/utility/simd/detail/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (builtin_simd_test.cpp) seqan3_test (debug_stream_simd_test.cpp) seqan3_test (default_simd_backend_test.cpp) diff --git a/test/unit/utility/simd/detail/builtin_simd_test.cpp b/test/unit/utility/simd/detail/builtin_simd_test.cpp index 0951b5f0b9..434197ee55 100644 --- a/test/unit/utility/simd/detail/builtin_simd_test.cpp +++ b/test/unit/utility/simd/detail/builtin_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/simd/detail/debug_stream_simd_test.cpp b/test/unit/utility/simd/detail/debug_stream_simd_test.cpp index cd1c45aa80..7662f6841b 100644 --- a/test/unit/utility/simd/detail/debug_stream_simd_test.cpp +++ b/test/unit/utility/simd/detail/debug_stream_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/simd/detail/default_simd_backend_test.cpp b/test/unit/utility/simd/detail/default_simd_backend_test.cpp index 573c5074b9..06248854f5 100644 --- a/test/unit/utility/simd/detail/default_simd_backend_test.cpp +++ b/test/unit/utility/simd/detail/default_simd_backend_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/simd/detail/default_simd_length_builtin_simd_test.cpp b/test/unit/utility/simd/detail/default_simd_length_builtin_simd_test.cpp index 62361765e5..3d12c6a8f9 100644 --- a/test/unit/utility/simd/detail/default_simd_length_builtin_simd_test.cpp +++ b/test/unit/utility/simd/detail/default_simd_length_builtin_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/simd/simd_algorithm_test.cpp b/test/unit/utility/simd/simd_algorithm_test.cpp index ae6d7eb724..7c57dbf8a9 100644 --- a/test/unit/utility/simd/simd_algorithm_test.cpp +++ b/test/unit/utility/simd/simd_algorithm_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/simd/simd_test.cpp b/test/unit/utility/simd/simd_test.cpp index eb3a9f5260..95ced82413 100644 --- a/test/unit/utility/simd/simd_test.cpp +++ b/test/unit/utility/simd/simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/simd/views/CMakeLists.txt b/test/unit/utility/simd/views/CMakeLists.txt index 38c92c97c6..fb77e60fc5 100644 --- a/test/unit/utility/simd/views/CMakeLists.txt +++ b/test/unit/utility/simd/views/CMakeLists.txt @@ -1,2 +1,6 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (iota_simd_test.cpp) seqan3_test (to_simd_test.cpp) diff --git a/test/unit/utility/simd/views/iota_simd_test.cpp b/test/unit/utility/simd/views/iota_simd_test.cpp index 17ead16f33..655a9c1be7 100644 --- a/test/unit/utility/simd/views/iota_simd_test.cpp +++ b/test/unit/utility/simd/views/iota_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/simd/views/to_simd_test.cpp b/test/unit/utility/simd/views/to_simd_test.cpp index 7d93860c6c..464f7206a1 100644 --- a/test/unit/utility/simd/views/to_simd_test.cpp +++ b/test/unit/utility/simd/views/to_simd_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/tuple/CMakeLists.txt b/test/unit/utility/tuple/CMakeLists.txt index da9bbb22a0..d8a68f1808 100644 --- a/test/unit/utility/tuple/CMakeLists.txt +++ b/test/unit/utility/tuple/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (pod_tuple_test.cpp) diff --git a/test/unit/utility/tuple/my_tuple.hpp b/test/unit/utility/tuple/my_tuple.hpp index 7842bf7771..9b8a68f46f 100644 --- a/test/unit/utility/tuple/my_tuple.hpp +++ b/test/unit/utility/tuple/my_tuple.hpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause /*!\file * \brief Provides my_tuple for testing tuple utility. diff --git a/test/unit/utility/tuple/pod_tuple_test.cpp b/test/unit/utility/tuple/pod_tuple_test.cpp index fff2f88ed2..c1f2b4178f 100644 --- a/test/unit/utility/tuple/pod_tuple_test.cpp +++ b/test/unit/utility/tuple/pod_tuple_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/tuple/pop_front_test.cpp b/test/unit/utility/tuple/pop_front_test.cpp index 7cb9924801..10220a270e 100644 --- a/test/unit/utility/tuple/pop_front_test.cpp +++ b/test/unit/utility/tuple/pop_front_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/tuple/split_test.cpp b/test/unit/utility/tuple/split_test.cpp index 21c52f057c..ad700fc413 100644 --- a/test/unit/utility/tuple/split_test.cpp +++ b/test/unit/utility/tuple/split_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_list/CMakeLists.txt b/test/unit/utility/type_list/CMakeLists.txt index f17efcbb2f..40bcb9634a 100644 --- a/test/unit/utility/type_list/CMakeLists.txt +++ b/test/unit/utility/type_list/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (type_list_test.cpp) diff --git a/test/unit/utility/type_list/detail/CMakeLists.txt b/test/unit/utility/type_list/detail/CMakeLists.txt index 5b87861110..d80e9d74e8 100644 --- a/test/unit/utility/type_list/detail/CMakeLists.txt +++ b/test/unit/utility/type_list/detail/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (type_list_algorithm_test.cpp) diff --git a/test/unit/utility/type_list/detail/type_list_algorithm_test.cpp b/test/unit/utility/type_list/detail/type_list_algorithm_test.cpp index d789cea289..2bd181a390 100644 --- a/test/unit/utility/type_list/detail/type_list_algorithm_test.cpp +++ b/test/unit/utility/type_list/detail/type_list_algorithm_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_list/type_list_test.cpp b/test/unit/utility/type_list/type_list_test.cpp index bda76801b1..9c4b3210ab 100644 --- a/test/unit/utility/type_list/type_list_test.cpp +++ b/test/unit/utility/type_list/type_list_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_list/type_list_traits_test.cpp b/test/unit/utility/type_list/type_list_traits_test.cpp index ca7533134e..56c794d768 100644 --- a/test/unit/utility/type_list/type_list_traits_test.cpp +++ b/test/unit/utility/type_list/type_list_traits_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_pack/CMakeLists.txt b/test/unit/utility/type_pack/CMakeLists.txt index bc74becb95..2981a94471 100644 --- a/test/unit/utility/type_pack/CMakeLists.txt +++ b/test/unit/utility/type_pack/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (type_pack_traits_test.cpp) diff --git a/test/unit/utility/type_pack/detail/CMakeLists.txt b/test/unit/utility/type_pack/detail/CMakeLists.txt index cd11419c93..dbed3caa5e 100644 --- a/test/unit/utility/type_pack/detail/CMakeLists.txt +++ b/test/unit/utility/type_pack/detail/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (type_pack_algorithm_test.cpp) diff --git a/test/unit/utility/type_pack/detail/type_pack_algorithm_test.cpp b/test/unit/utility/type_pack/detail/type_pack_algorithm_test.cpp index 05b5a9b58c..2cf417a906 100644 --- a/test/unit/utility/type_pack/detail/type_pack_algorithm_test.cpp +++ b/test/unit/utility/type_pack/detail/type_pack_algorithm_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_pack/type_pack_traits_test.cpp b/test/unit/utility/type_pack/type_pack_traits_test.cpp index 03beaa4f38..48f43263a9 100644 --- a/test/unit/utility/type_pack/type_pack_traits_test.cpp +++ b/test/unit/utility/type_pack/type_pack_traits_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_traits/CMakeLists.txt b/test/unit/utility/type_traits/CMakeLists.txt index be950bdab6..d0b91a60eb 100644 --- a/test/unit/utility/type_traits/CMakeLists.txt +++ b/test/unit/utility/type_traits/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (basic_test.cpp) diff --git a/test/unit/utility/type_traits/basic_test.cpp b/test/unit/utility/type_traits/basic_test.cpp index 26ec360572..1b41e628f8 100644 --- a/test/unit/utility/type_traits/basic_test.cpp +++ b/test/unit/utility/type_traits/basic_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_traits/detail/CMakeLists.txt b/test/unit/utility/type_traits/detail/CMakeLists.txt index 6c952922aa..96c8c1e958 100644 --- a/test/unit/utility/type_traits/detail/CMakeLists.txt +++ b/test/unit/utility/type_traits/detail/CMakeLists.txt @@ -1 +1,5 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + seqan3_test (transformation_trait_or_test.cpp) diff --git a/test/unit/utility/type_traits/detail/transformation_trait_or_test.cpp b/test/unit/utility/type_traits/detail/transformation_trait_or_test.cpp index 657007568a..e081a33d7b 100644 --- a/test/unit/utility/type_traits/detail/transformation_trait_or_test.cpp +++ b/test/unit/utility/type_traits/detail/transformation_trait_or_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_traits/function_traits_test.cpp b/test/unit/utility/type_traits/function_traits_test.cpp index 3cfc97cef2..9b9e11fbdd 100644 --- a/test/unit/utility/type_traits/function_traits_test.cpp +++ b/test/unit/utility/type_traits/function_traits_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/type_traits/lazy_conditional_test.cpp b/test/unit/utility/type_traits/lazy_conditional_test.cpp index a0268f2b9e..b75d08bf11 100644 --- a/test/unit/utility/type_traits/lazy_conditional_test.cpp +++ b/test/unit/utility/type_traits/lazy_conditional_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/CMakeLists.txt b/test/unit/utility/views/CMakeLists.txt index da05147350..e13da5227b 100644 --- a/test/unit/utility/views/CMakeLists.txt +++ b/test/unit/utility/views/CMakeLists.txt @@ -1,3 +1,7 @@ +# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +# SPDX-License-Identifier: CC0-1.0 + add_subdirectories () seqan3_test (chunk_test.cpp) diff --git a/test/unit/utility/views/chunk_test.cpp b/test/unit/utility/views/chunk_test.cpp index 3e371facbc..3e6de6711f 100644 --- a/test/unit/utility/views/chunk_test.cpp +++ b/test/unit/utility/views/chunk_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/convert_test.cpp b/test/unit/utility/views/convert_test.cpp index a10298edf0..3d73eea81f 100644 --- a/test/unit/utility/views/convert_test.cpp +++ b/test/unit/utility/views/convert_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/deep_test.cpp b/test/unit/utility/views/deep_test.cpp index bd83d29822..4d56536aab 100644 --- a/test/unit/utility/views/deep_test.cpp +++ b/test/unit/utility/views/deep_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/elements_test.cpp b/test/unit/utility/views/elements_test.cpp index 738dfc88d2..c2e55d8ad9 100644 --- a/test/unit/utility/views/elements_test.cpp +++ b/test/unit/utility/views/elements_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/enforce_random_access_test.cpp b/test/unit/utility/views/enforce_random_access_test.cpp index 922e345d70..e3e5200283 100644 --- a/test/unit/utility/views/enforce_random_access_test.cpp +++ b/test/unit/utility/views/enforce_random_access_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/interleave_test.cpp b/test/unit/utility/views/interleave_test.cpp index ed5597b40a..5808bdd759 100644 --- a/test/unit/utility/views/interleave_test.cpp +++ b/test/unit/utility/views/interleave_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/join_with_test.cpp b/test/unit/utility/views/join_with_test.cpp index 912bf3ff7c..2ed92eba2e 100644 --- a/test/unit/utility/views/join_with_test.cpp +++ b/test/unit/utility/views/join_with_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/pairwise_combine_test.cpp b/test/unit/utility/views/pairwise_combine_test.cpp index 984c55dd95..5d8e044647 100644 --- a/test/unit/utility/views/pairwise_combine_test.cpp +++ b/test/unit/utility/views/pairwise_combine_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/repeat_n_test.cpp b/test/unit/utility/views/repeat_n_test.cpp index a15613d0f8..f89fdd0265 100644 --- a/test/unit/utility/views/repeat_n_test.cpp +++ b/test/unit/utility/views/repeat_n_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/repeat_test.cpp b/test/unit/utility/views/repeat_test.cpp index 6033ff94d9..fb61853e16 100644 --- a/test/unit/utility/views/repeat_test.cpp +++ b/test/unit/utility/views/repeat_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/single_pass_input_test.cpp b/test/unit/utility/views/single_pass_input_test.cpp index 1567d93ed2..0d45e50516 100644 --- a/test/unit/utility/views/single_pass_input_test.cpp +++ b/test/unit/utility/views/single_pass_input_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/slice_test.cpp b/test/unit/utility/views/slice_test.cpp index 2a4b1a9c17..3c182a1a5c 100644 --- a/test/unit/utility/views/slice_test.cpp +++ b/test/unit/utility/views/slice_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/type_reduce_test.cpp b/test/unit/utility/views/type_reduce_test.cpp index 4d5e813523..1ca66af541 100644 --- a/test/unit/utility/views/type_reduce_test.cpp +++ b/test/unit/utility/views/type_reduce_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include diff --git a/test/unit/utility/views/zip_test.cpp b/test/unit/utility/views/zip_test.cpp index 9e20bd65ec..eecf73ba14 100644 --- a/test/unit/utility/views/zip_test.cpp +++ b/test/unit/utility/views/zip_test.cpp @@ -1,9 +1,6 @@ -// ----------------------------------------------------------------------------------------------------- -// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin -// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik -// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License -// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md -// ----------------------------------------------------------------------------------------------------- +// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin +// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik +// SPDX-License-Identifier: BSD-3-Clause #include