cluster.json

{
    "__default__" :
    {
        "time" : "06:00:00",
        "jobname": "default",
        "partition" : "ccr",
        "mem"  : "64g",
        "extra": "--gres=lscratch:5",
        "out"  : "log/{rule}_{wildcards.sample}-%j.out"
    },
    "merge_controls" :
    {
        "mem": "24gb",
        "jobname": "mergeControls",
        "time": "2:00:00",
        "extra": "--gres=lscratch:20"
    },
    "MAC2_broadPeaks" :
    {
        "mem": "12gb",
        "jobname": "MAC2Broad",
        "time": "4:00:00",
        "extra": "--gres=lscratch:10"
    },
    "MAC2_narrowPeaks" :
    {
        "mem": "12gb",
        "jobname": "MAC2Narrow",
        "time": "4:00:00",
        "extra": "--gres=lscratch:10"
    },
    "ccat" :
    {
        "mem": "12gb",
        "jobname": "ccat",
        "time": "5:00:00",
        "extra": "--gres=lscratch:10"
    },
    "bcp" :
    {
        "mem": "12gb",
        "jobname": "bcp",
        "time": "5:00:00",
        "extra": "--gres=lscratch:10"
    },
    "ranger" :
    {
        "mem": "12gb",
        "jobname": "ranger",
        "time": "5:00:00",
        "extra": "--gres=lscratch:10"
    },
    "bams2beds" :
    {
        "mem": "6gb",
        "jobname": "bams2beds",
        "time": "4:00:00",
        "extra": "--gres=lscratch:20"
    },
    "ngsqc" :
    {
        "mem": "80gb",
        "jobname": "ngsqc",
        "time": "6:00:00",
        "extra": "--gres=lscratch:30"
    },
    "sicer_broad" :
    {
        "mem": "24gb",
        "jobname": "sicerBroad",
        "time": "5:00:00",
        "extra": "--gres=lscratch:10"
    },
    "sicer_narrow" :
    {
        "mem": "24gb",
        "jobname": "sicerNarrow",
        "time": "5:00:00",
        "extra": "--gres=lscratch:10"
    }
}