From 8bccc1d172102d5c941a7ad4de983794e0607ed3 Mon Sep 17 00:00:00 2001
From: Michael Hall <michael@mbh.sh>
Date: Wed, 10 Apr 2024 14:40:34 +1000
Subject: [PATCH 1/4] fix: don't add spacing between consencutive braces in
 string [closes #222]

---
 snakefmt/parser/syntax.py | 2 ++
 tests/test_formatter.py   | 9 ++++++---
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/snakefmt/parser/syntax.py b/snakefmt/parser/syntax.py
index c5e9bd7..55fb879 100644
--- a/snakefmt/parser/syntax.py
+++ b/snakefmt/parser/syntax.py
@@ -72,6 +72,8 @@ def operator_skip_spacing(prev_token: Token, token: Token) -> bool:
         return True
     elif prev_token.type == tokenize.STRING and token.string == ",":
         return True
+    elif prev_token.string == "}" and token.string == "{":  # issue #220
+        return True
     else:
         return False
 
diff --git a/tests/test_formatter.py b/tests/test_formatter.py
index 2ddc05f..23937a7 100644
--- a/tests/test_formatter.py
+++ b/tests/test_formatter.py
@@ -861,9 +861,6 @@ def test_f_string_with_double_braces_in_input(self):
 
     def test_f_string_with_double_braces_in_python_code(self):
         """https://github.com/snakemake/snakefmt/issues/215"""
-        """def get_test_regions(wildcards):
-    benchmark = config["variant-calls"][wildcards.callset]["benchmark"]
-    return f"resources/regions/{benchmark}/test-regions.cov-{{cov}}.bed"""
         snakecode = (
             "def get_test_regions(wildcards):\n"
             f'{TAB * 1}benchmark = config["variant-calls"][wildcards.callset]["benchmark"]\n'  # noqa: E501
@@ -872,6 +869,12 @@ def test_f_string_with_double_braces_in_python_code(self):
         formatter = setup_formatter(snakecode)
         assert formatter.get_formatted() == snakecode
 
+    def test_f_string_spacing_of_consecutive_braces(self):
+        """https://github.com/snakemake/snakefmt/issues/222"""
+        snakecode = 'f"{var1}{var2}"\n'
+        formatter = setup_formatter(snakecode)
+        assert formatter.get_formatted() == snakecode
+
 
 class TestReformatting_SMK_BREAK:
     """

From cce47feecd75b79c55f9dfbf22c5ea577a845f23 Mon Sep 17 00:00:00 2001
From: Michael Hall <michael@mbh.sh>
Date: Wed, 10 Apr 2024 15:03:23 +1000
Subject: [PATCH 2/4] fix: correctly find config file after updating min. black
 to v24.3

---
 poetry.lock          | 716 ++++++++++++++++++++++---------------------
 pyproject.toml       |   2 +-
 snakefmt/config.py   |  56 +++-
 tests/test_config.py |   3 +-
 4 files changed, 416 insertions(+), 361 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 4cce79e..7ca132b 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
 
 [[package]]
 name = "appdirs"
@@ -32,33 +32,33 @@ tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "p
 
 [[package]]
 name = "black"
-version = "24.1.1"
+version = "24.3.0"
 description = "The uncompromising code formatter."
 optional = false
 python-versions = ">=3.8"
 files = [
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-    {file = "black-24.1.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:1a95915c98d6e32ca43809d46d932e2abc5f1f7d582ffbe65a5b4d1588af7445"},
-    {file = "black-24.1.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2fa6a0e965779c8f2afb286f9ef798df770ba2b6cee063c650b96adec22c056a"},
-    {file = "black-24.1.1-cp310-cp310-win_amd64.whl", hash = "sha256:5242ecd9e990aeb995b6d03dc3b2d112d4a78f2083e5a8e86d566340ae80fec4"},
-    {file = "black-24.1.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:fc1ec9aa6f4d98d022101e015261c056ddebe3da6a8ccfc2c792cbe0349d48b7"},
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+    {file = "black-24.3.0.tar.gz", hash = "sha256:a0c9c4a0771afc6919578cec71ce82a3e31e054904e7197deacbc9382671c41f"},
 ]
 
 [package.dependencies]
@@ -78,13 +78,13 @@ uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "certifi"
-version = "2023.11.17"
+version = "2024.2.2"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"},
-    {file = "certifi-2023.11.17.tar.gz", hash = "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1"},
+    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
+    {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
 ]
 
 [[package]]
@@ -238,63 +238,63 @@ files = [
 
 [[package]]
 name = "coverage"
-version = "7.4.1"
+version = "7.4.4"
 description = "Code coverage measurement for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -342,11 +342,8 @@ name = "docutils"
 version = "0.20.1"
 description = "Docutils -- Python Documentation Utilities"
 optional = false
-python-versions = ">=3.7"
-files = [
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-]
+python-versions = "*"
+files = []
 
 [[package]]
 name = "dpath"
@@ -419,20 +416,21 @@ smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
-version = "3.1.41"
+version = "3.1.43"
 description = "GitPython is a Python library used to interact with Git repositories"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
 gitdb = ">=4.0.1,<5"
 
 [package.extras]
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 [[package]]
 name = "greenlet"
@@ -532,13 +530,13 @@ files = [
 
 [[package]]
 name = "importlib-resources"
-version = "6.1.1"
+version = "6.4.0"
 description = "Read resources from Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -546,7 +544,7 @@ zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
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+testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
 
 [[package]]
 name = "iniconfig"
@@ -630,13 +628,13 @@ referencing = ">=0.31.0"
 
 [[package]]
 name = "jupyter-core"
-version = "5.7.1"
+version = "5.7.2"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -646,75 +644,75 @@ traitlets = ">=5.3"
 
 [package.extras]
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+test = ["ipykernel", "pre-commit", "pytest (<8)", "pytest-cov", "pytest-timeout"]
 
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 [[package]]
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+version = "5.10.4"
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 [package.dependencies]
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-jupyter-core = "*"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 traitlets = ">=5.1"
 
 [package.extras]
@@ -827,13 +825,13 @@ test = ["pep440", "pre-commit", "pytest", "testpath"]
 
 [[package]]
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 python-versions = ">=3.7"
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 [[package]]
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 python-versions = "*"
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 [[package]]
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 python-versions = ">=3.8"
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 [[package]]
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@@ -1114,13 +1111,13 @@ files = [
 
 [[package]]
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 description = "JSON Referencing + Python"
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 python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
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 python-versions = ">=3.8"
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+    {file = "rpds_py-0.18.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:cf1ea2e34868f6fbf070e1af291c8180480310173de0b0c43fc38a02929fc0e3"},
+    {file = "rpds_py-0.18.0-pp38-pypy38_pp73-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:e546e768d08ad55b20b11dbb78a745151acbd938f8f00d0cfbabe8b0199b9880"},
+    {file = "rpds_py-0.18.0-pp38-pypy38_pp73-musllinux_1_2_aarch64.whl", hash = "sha256:4901165d170a5fde6f589acb90a6b33629ad1ec976d4529e769c6f3d885e3e80"},
+    {file = "rpds_py-0.18.0-pp38-pypy38_pp73-musllinux_1_2_i686.whl", hash = "sha256:618a3d6cae6ef8ec88bb76dd80b83cfe415ad4f1d942ca2a903bf6b6ff97a2da"},
+    {file = "rpds_py-0.18.0-pp38-pypy38_pp73-musllinux_1_2_x86_64.whl", hash = "sha256:ed4eb745efbff0a8e9587d22a84be94a5eb7d2d99c02dacf7bd0911713ed14dd"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-macosx_10_12_x86_64.whl", hash = "sha256:6c81e5f372cd0dc5dc4809553d34f832f60a46034a5f187756d9b90586c2c307"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-macosx_11_0_arm64.whl", hash = "sha256:43fbac5f22e25bee1d482c97474f930a353542855f05c1161fd804c9dc74a09d"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:6d7faa6f14017c0b1e69f5e2c357b998731ea75a442ab3841c0dbbbfe902d2c4"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:08231ac30a842bd04daabc4d71fddd7e6d26189406d5a69535638e4dcb88fe76"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:044a3e61a7c2dafacae99d1e722cc2d4c05280790ec5a05031b3876809d89a5c"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:3f26b5bd1079acdb0c7a5645e350fe54d16b17bfc5e71f371c449383d3342e17"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:482103aed1dfe2f3b71a58eff35ba105289b8d862551ea576bd15479aba01f66"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:1374f4129f9bcca53a1bba0bb86bf78325a0374577cf7e9e4cd046b1e6f20e24"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-musllinux_1_2_aarch64.whl", hash = "sha256:635dc434ff724b178cb192c70016cc0ad25a275228f749ee0daf0eddbc8183b1"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-musllinux_1_2_i686.whl", hash = "sha256:bc362ee4e314870a70f4ae88772d72d877246537d9f8cb8f7eacf10884862432"},
+    {file = "rpds_py-0.18.0-pp39-pypy39_pp73-musllinux_1_2_x86_64.whl", hash = "sha256:4832d7d380477521a8c1644bbab6588dfedea5e30a7d967b5fb75977c45fd77f"},
+    {file = "rpds_py-0.18.0.tar.gz", hash = "sha256:42821446ee7a76f5d9f71f9e33a4fb2ffd724bb3e7f93386150b61a43115788d"},
 ]
 
 [[package]]
 name = "smart-open"
-version = "6.4.0"
+version = "7.0.4"
 description = "Utils for streaming large files (S3, HDFS, GCS, Azure Blob Storage, gzip, bz2...)"
 optional = false
-python-versions = ">=3.6,<4.0"
+python-versions = "<4.0,>=3.7"
 files = [
-    {file = "smart_open-6.4.0-py3-none-any.whl", hash = "sha256:8d3ef7e6997e8e42dd55c74166ed21e6ac70664caa32dd940b26d54a8f6b4142"},
-    {file = "smart_open-6.4.0.tar.gz", hash = "sha256:be3c92c246fbe80ebce8fbacb180494a481a77fcdcb7c1aadb2ea5b9c2bee8b9"},
+    {file = "smart_open-7.0.4-py3-none-any.whl", hash = "sha256:4e98489932b3372595cddc075e6033194775165702887216b65eba760dfd8d47"},
+    {file = "smart_open-7.0.4.tar.gz", hash = "sha256:62b65852bdd1d1d516839fcb1f6bc50cd0f16e05b4ec44b52f43d38bcb838524"},
 ]
 
+[package.dependencies]
+wrapt = "*"
+
 [package.extras]
-all = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "paramiko", "requests"]
+all = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "paramiko", "requests", "zstandard"]
 azure = ["azure-common", "azure-core", "azure-storage-blob"]
 gcs = ["google-cloud-storage (>=2.6.0)"]
 http = ["requests"]
 s3 = ["boto3"]
 ssh = ["paramiko"]
-test = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "moto[server]", "paramiko", "pytest", "pytest-rerunfailures", "requests", "responses"]
+test = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "moto[server]", "paramiko", "pytest", "pytest-rerunfailures", "requests", "responses", "zstandard"]
 webhdfs = ["requests"]
+zst = ["zstandard"]
 
 [[package]]
 name = "smmap"
@@ -1414,43 +1415,44 @@ files = [
 
 [[package]]
 name = "traitlets"
-version = "5.14.1"
+version = "5.14.2"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "traitlets-5.14.1-py3-none-any.whl", hash = "sha256:2e5a030e6eff91737c643231bfcf04a65b0132078dad75e4936700b213652e74"},
-    {file = "traitlets-5.14.1.tar.gz", hash = "sha256:8585105b371a04b8316a43d5ce29c098575c2e477850b62b848b964f1444527e"},
+    {file = "traitlets-5.14.2-py3-none-any.whl", hash = "sha256:fcdf85684a772ddeba87db2f398ce00b40ff550d1528c03c14dbf6a02003cd80"},
+    {file = "traitlets-5.14.2.tar.gz", hash = "sha256:8cdd83c040dab7d1dee822678e5f5d100b514f7b72b01615b26fc5718916fdf9"},
 ]
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
-test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.1)", "pytest-mock", "pytest-mypy-testing"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.9.0"
+version = "4.11.0"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.9.0-py3-none-any.whl", hash = "sha256:af72aea155e91adfc61c3ae9e0e342dbc0cba726d6cba4b6c72c1f34e47291cd"},
-    {file = "typing_extensions-4.9.0.tar.gz", hash = "sha256:23478f88c37f27d76ac8aee6c905017a143b0b1b886c3c9f66bc2fd94f9f5783"},
+    {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"},
+    {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
 ]
 
 [[package]]
 name = "urllib3"
-version = "2.1.0"
+version = "2.2.1"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "urllib3-2.1.0-py3-none-any.whl", hash = "sha256:55901e917a5896a349ff771be919f8bd99aff50b79fe58fec595eb37bbc56bb3"},
-    {file = "urllib3-2.1.0.tar.gz", hash = "sha256:df7aa8afb0148fa78488e7899b2c59b5f4ffcfa82e6c54ccb9dd37c1d7b52d54"},
+    {file = "urllib3-2.2.1-py3-none-any.whl", hash = "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d"},
+    {file = "urllib3-2.2.1.tar.gz", hash = "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"},
 ]
 
 [package.extras]
 brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
+h2 = ["h2 (>=4,<5)"]
 socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
 zstd = ["zstandard (>=0.18.0)"]
 
@@ -1551,20 +1553,20 @@ pyyaml = ">=6.0,<7.0"
 
 [[package]]
 name = "zipp"
-version = "3.17.0"
+version = "3.18.1"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
-    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
+    {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"},
+    {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.8.1"
-content-hash = "ac1fe1e90680e0958321b8f8a91f2353585538d87d438df4b13144460105683c"
+content-hash = "6a9588155bdf99dc01ec667727e864a1201ba9f9358f72747d9ef4fdf7c0b952"
diff --git a/pyproject.toml b/pyproject.toml
index 8bdf1d3..e7e014a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -16,7 +16,7 @@ snakefmt = 'snakefmt.snakefmt:main'
 [tool.poetry.dependencies]
 python = "^3.8.1"
 click = "^8.0.0"
-black = "^24.1.1"
+black = "^24.3.0"
 toml = "^0.10.2"
 importlib_metadata = {version = ">=1.7.0,<5.0", python = "<3.8"}
 
diff --git a/snakefmt/config.py b/snakefmt/config.py
index 7de751e..f3a9213 100644
--- a/snakefmt/config.py
+++ b/snakefmt/config.py
@@ -3,12 +3,13 @@
 """
 
 from dataclasses import fields
+from functools import lru_cache
 from pathlib import Path
-from typing import Dict, Optional, Sequence, Union
+from typing import Dict, Optional, Sequence, Tuple, Union
 
 import click
 import toml
-from black import Mode, find_project_root
+from black import Mode
 
 from snakefmt import DEFAULT_LINE_LENGTH, DEFAULT_TARGET_VERSIONS
 from snakefmt.exceptions import MalformattedToml
@@ -16,6 +17,57 @@
 PathLike = Union[Path, str]
 
 
+@lru_cache
+def find_project_root(
+    srcs: Sequence[str], stdin_filename: Optional[str] = None
+) -> Tuple[Path, str]:
+    """Return a directory containing .git, .hg, or pyproject.toml.
+
+    That directory will be a common parent of all files and directories
+    passed in `srcs`.
+
+    If no directory in the tree contains a marker that would specify it's the
+    project root, the root of the file system is returned.
+
+    Returns a two-tuple with the first element as the project root path and
+    the second element as a string describing the method by which the
+    project root was discovered.
+
+    Note: taken directly from black v24.1.0 as they changed the behaviour of this
+    function in v24.2.0 to only find the root if the pyproject.toml file contained the
+    [tool.black] section. This is not the desired behaviour for snakefmt
+    """
+    if stdin_filename is not None:
+        srcs = tuple(stdin_filename if s == "-" else s for s in srcs)
+    if not srcs:
+        srcs = [str(Path.cwd().resolve())]
+
+    path_srcs = [Path(Path.cwd(), src).resolve() for src in srcs]
+
+    # A list of lists of parents for each 'src'. 'src' is included as a
+    # "parent" of itself if it is a directory
+    src_parents = [
+        list(path.parents) + ([path] if path.is_dir() else []) for path in path_srcs
+    ]
+
+    common_base = max(
+        set.intersection(*(set(parents) for parents in src_parents)),
+        key=lambda path: path.parts,
+    )
+
+    for directory in (common_base, *common_base.parents):
+        if (directory / ".git").exists():
+            return directory, ".git directory"
+
+        if (directory / ".hg").is_dir():
+            return directory, ".hg directory"
+
+        if (directory / "pyproject.toml").is_file():
+            return directory, "pyproject.toml"
+
+    return directory, "file system root"
+
+
 def find_pyproject_toml(start_path: Sequence[str]) -> Optional[str]:
     root, _ = find_project_root(start_path)
     config_file = root / "pyproject.toml"
diff --git a/tests/test_config.py b/tests/test_config.py
index cc89b45..2ee21d6 100644
--- a/tests/test_config.py
+++ b/tests/test_config.py
@@ -25,7 +25,8 @@ def test_black_and_snakefmt_default_line_lengths_aligned():
 class TestFindPyprojectToml:
     def test_find_pyproject_toml_nested_directory(self, tmp_path):
         config_file = (tmp_path / "pyproject.toml").resolve()
-        config_file.touch()
+        # add [tool.black] to TOML to ensure black finds it (new in black v24.2.0)
+        config_file.write_text("[tool.black]\n")
         dir1 = Path(tmp_path / "dir1").resolve()
         dir1.mkdir()
         snakefile = dir1 / "Snakefile"

From 136ff8c03a555fa250cae048eda57dd24e3ab10e Mon Sep 17 00:00:00 2001
From: Brice Letcher <brice.letcher@ens-lyon.fr>
Date: Mon, 6 May 2024 15:16:48 +0200
Subject: [PATCH 3/4] fix: f-string spacing [closes #220 and #227]

---
 snakefmt/__init__.py      |  3 ++
 snakefmt/parser/parser.py |  5 ++-
 snakefmt/parser/syntax.py | 65 +++++++++++++++++++++++++++++++--------
 tests/test_formatter.py   | 28 +++++++++++++----
 4 files changed, 82 insertions(+), 19 deletions(-)

diff --git a/snakefmt/__init__.py b/snakefmt/__init__.py
index 5781736..df2300a 100644
--- a/snakefmt/__init__.py
+++ b/snakefmt/__init__.py
@@ -15,6 +15,9 @@
 
 __version__ = metadata.version("snakefmt")
 
+# New f-string tokenizing was introduced in python 3.12 - we have to deal with it, too.
+fstring_tokeniser_in_use = sys.version_info >= (3, 12)
+
 DEFAULT_LINE_LENGTH = 88
 DEFAULT_TARGET_VERSIONS = {
     TargetVersion.PY38,
diff --git a/snakefmt/parser/parser.py b/snakefmt/parser/parser.py
index d9c0d45..3154773 100644
--- a/snakefmt/parser/parser.py
+++ b/snakefmt/parser/parser.py
@@ -9,6 +9,7 @@
     ParameterSyntax,
     Vocabulary,
     add_token_space,
+    fstring_processing,
     is_newline,
     re_add_curly_bracket_if_needed,
 )
@@ -85,6 +86,7 @@ def __init__(self, snakefile: TokenIterator):
         self.last_block_was_snakecode = False
         self.block_indent = 0
         self.queriable = True
+        self.in_fstring = False
 
         status = self.get_next_queriable(self.snakefile)
         self.buffer = status.buffer
@@ -277,6 +279,7 @@ def get_next_queriable(self, snakefile: TokenIterator) -> Status:
         prev_token: Optional[Token] = Token(tokenize.NAME)
         while True:
             token = next(snakefile)
+            self.in_fstring = fstring_processing(token, prev_token, self.in_fstring)
             if block_indent == -1 and not_a_comment_related_token(token):
                 block_indent = self.cur_indent
             if token.type == tokenize.INDENT:
@@ -317,7 +320,7 @@ def get_next_queriable(self, snakefile: TokenIterator) -> Status:
                     token, block_indent, self.cur_indent, buffer, False, pythonable
                 )
 
-            if add_token_space(prev_token, token):
+            if add_token_space(prev_token, token, self.in_fstring):
                 buffer += " "
             prev_token = token
             if newline:
diff --git a/snakefmt/parser/syntax.py b/snakefmt/parser/syntax.py
index 55fb879..5b2b9b3 100644
--- a/snakefmt/parser/syntax.py
+++ b/snakefmt/parser/syntax.py
@@ -2,11 +2,12 @@
 Code in charge of parsing and validating Snakemake syntax
 """
 
-import sys
 import tokenize
 from abc import ABC, abstractmethod
 from re import match as re_match
+from typing import Optional
 
+from snakefmt import fstring_tokeniser_in_use
 from snakefmt.exceptions import (
     ColonError,
     EmptyContextError,
@@ -38,17 +39,33 @@
     tokenize.NUMBER: {tokenize.NAME, tokenize.OP},
     tokenize.OP: {tokenize.NAME, tokenize.STRING, tokenize.NUMBER, tokenize.OP},
 }
-# add fstring start to spacing_triggers if python 3.12 or higher
-if hasattr(tokenize, "FSTRING_START"):
+
+if fstring_tokeniser_in_use:
     spacing_triggers[tokenize.NAME].add(tokenize.FSTRING_START)
     spacing_triggers[tokenize.OP].add(tokenize.FSTRING_START)
+    # A more compact spacing syntax than the above.
+    fstring_spacing_triggers = {
+        tokenize.NAME: {
+            tokenize.NAME,
+            tokenize.STRING,
+            tokenize.NUMBER,
+            tokenize.FSTRING_START,
+        },
+        tokenize.STRING: {tokenize.NAME, tokenize.OP},
+        tokenize.NUMBER: {tokenize.NAME},
+        tokenize.OP: {
+            tokenize.NAME,
+            tokenize.STRING,
+            tokenize.FSTRING_START,
+        },
+    }
 
 
 def re_add_curly_bracket_if_needed(token: Token) -> str:
     result = ""
     if (
-        token is not None
-        and sys.version_info >= (3, 12)
+        fstring_tokeniser_in_use
+        and token is not None
         and token.type == tokenize.FSTRING_MIDDLE
     ):
         if token.string.endswith("}"):
@@ -58,6 +75,22 @@ def re_add_curly_bracket_if_needed(token: Token) -> str:
     return result
 
 
+def fstring_processing(
+    token: Token, prev_token: Optional[Token], in_fstring: bool
+) -> bool:
+    """
+    Returns True if we are entering, or have already entered and not exited,
+    an f-string.
+    """
+    result = False
+    if fstring_tokeniser_in_use:
+        if prev_token is not None and prev_token.type == tokenize.FSTRING_START:
+            result = True
+        elif token.type != tokenize.FSTRING_END and in_fstring:
+            result = True
+    return result
+
+
 def operator_skip_spacing(prev_token: Token, token: Token) -> bool:
     if prev_token.type != tokenize.OP and token.type != tokenize.OP:
         return False
@@ -72,17 +105,18 @@ def operator_skip_spacing(prev_token: Token, token: Token) -> bool:
         return True
     elif prev_token.type == tokenize.STRING and token.string == ",":
         return True
-    elif prev_token.string == "}" and token.string == "{":  # issue #220
-        return True
     else:
         return False
 
 
-def add_token_space(prev_token: Token, token: Token) -> bool:
+def add_token_space(prev_token: Token, token: Token, in_fstring: bool = False) -> bool:
     result = False
-    if prev_token is not None and prev_token.type in spacing_triggers:
+    if prev_token is not None:
         if not operator_skip_spacing(prev_token, token):
-            if token.type in spacing_triggers[prev_token.type]:
+            if not in_fstring:
+                if token.type in spacing_triggers.get(prev_token.type, {}):
+                    result = True
+            elif token.type in fstring_spacing_triggers.get(prev_token.type, {}):
                 result = True
     return result
 
@@ -150,8 +184,8 @@ def has_a_key(self) -> bool:
     def has_value(self) -> bool:
         return len(self.value) > 0
 
-    def add_elem(self, prev_token: Token, token: Token):
-        if add_token_space(prev_token, token) and len(self.value) > 0:
+    def add_elem(self, prev_token: Token, token: Token, in_fstring: bool = False):
+        if add_token_space(prev_token, token, in_fstring) and len(self.value) > 0:
             self.value += " "
 
         if self.is_empty():
@@ -324,6 +358,7 @@ def __init__(
         self.eof = False
         self.incident_vocab = incident_vocab
         self._brackets = list()
+        self.in_fstring = False
         self.in_lambda = False
         self.found_newline = False
 
@@ -380,6 +415,12 @@ def check_exit(self, cur_param: Parameter):
 
     def process_token(self, cur_param: Parameter, prev_token: Token) -> Parameter:
         token_type = self.token.type
+        # f-string treatment (since python 3.12)
+        self.in_fstring = fstring_processing(self.token, prev_token, self.in_fstring)
+        if self.in_fstring:
+            cur_param.add_elem(prev_token, self.token, self.in_fstring)
+            return cur_param
+
         # Eager treatment of comments: tag them onto params
         if token_type == tokenize.COMMENT and not self.in_brackets:
             cur_param.add_comment(self.token.string, self.keyword_indent)
diff --git a/tests/test_formatter.py b/tests/test_formatter.py
index 23937a7..843db1c 100644
--- a/tests/test_formatter.py
+++ b/tests/test_formatter.py
@@ -394,9 +394,9 @@ def test_decorator_is_handled_correctly(self):
         actual = formatter.get_formatted()
         assert actual == snakecode
 
-    def test_f_strings(self):
+    def test_fstrings(self):
         """This is relevant for python3.12"""
-        snakecode = 'a = f"{1 + 2}" if 1 > 0 else f"{1 - 2}"\n'
+        snakecode = 'a = f"{1+2}" if 1 > 0 else f"{1-2}"\n'
         formatter = setup_formatter(snakecode)
 
         actual = formatter.get_formatted()
@@ -686,7 +686,7 @@ def test_keyword_with_tpq_inside_expression_left_alone(self):
         formatter = setup_formatter(snakecode)
         assert formatter.get_formatted() == snakecode
 
-    def test_rf_string_tpq_supported(self):
+    def test_r_and_fstring_tpq_supported(self):
         """Deliberately tests for consecutive r/f strings and with
         single or double quotes"""
         for preceding in {"r", "f"}:
@@ -846,7 +846,7 @@ def test_tpq_inside_run_block(self):
 
         assert formatter.get_formatted() == snakecode
 
-    def test_f_string_with_double_braces_in_input(self):
+    def test_fstring_with_double_braces_in_input(self):
         """https://github.com/snakemake/snakefmt/issues/207"""
         snakecode = (
             "rule align:\n"
@@ -859,7 +859,7 @@ def test_f_string_with_double_braces_in_input(self):
         formatter = setup_formatter(snakecode)
         assert formatter.get_formatted() == snakecode
 
-    def test_f_string_with_double_braces_in_python_code(self):
+    def test_fstring_with_double_braces_in_python_code(self):
         """https://github.com/snakemake/snakefmt/issues/215"""
         snakecode = (
             "def get_test_regions(wildcards):\n"
@@ -869,12 +869,28 @@ def test_f_string_with_double_braces_in_python_code(self):
         formatter = setup_formatter(snakecode)
         assert formatter.get_formatted() == snakecode
 
-    def test_f_string_spacing_of_consecutive_braces(self):
+    def test_fstring_spacing_of_consecutive_braces(self):
         """https://github.com/snakemake/snakefmt/issues/222"""
         snakecode = 'f"{var1}{var2}"\n'
         formatter = setup_formatter(snakecode)
         assert formatter.get_formatted() == snakecode
 
+    def test_fstring_with_equal_sign_inside_function_call(self):
+        """https://github.com/snakemake/snakefmt/issues/220"""
+        snakecode = 'test = f"job_properties: {json.dumps(job_properties, indent=4)}"\n'
+        formatter = setup_formatter(snakecode)
+        assert formatter.get_formatted() == snakecode
+
+    def test_fstring_with_list_comprehension_inside_function_call(self):
+        """https://github.com/snakemake/snakefmt/issues/227"""
+        snakecode = (
+            "rule subsample:\n"
+            f"{TAB * 1}input:\n"
+            f"{TAB * 2}f\"{{' '.join([i for i in range(10)])}}\",\n"
+        )
+        formatter = setup_formatter(snakecode)
+        assert formatter.get_formatted() == snakecode
+
 
 class TestReformatting_SMK_BREAK:
     """

From 46c12a268d875308c9d80f15c15f3d39090b6a31 Mon Sep 17 00:00:00 2001
From: Brice Letcher <brice.letcher@ens-lyon.fr>
Date: Mon, 6 May 2024 15:47:05 +0200
Subject: [PATCH 4/4] Remove unnecessary entries in f-string formatter

---
 snakefmt/parser/syntax.py | 2 --
 1 file changed, 2 deletions(-)

diff --git a/snakefmt/parser/syntax.py b/snakefmt/parser/syntax.py
index 5b2b9b3..a12df02 100644
--- a/snakefmt/parser/syntax.py
+++ b/snakefmt/parser/syntax.py
@@ -49,14 +49,12 @@
             tokenize.NAME,
             tokenize.STRING,
             tokenize.NUMBER,
-            tokenize.FSTRING_START,
         },
         tokenize.STRING: {tokenize.NAME, tokenize.OP},
         tokenize.NUMBER: {tokenize.NAME},
         tokenize.OP: {
             tokenize.NAME,
             tokenize.STRING,
-            tokenize.FSTRING_START,
         },
     }