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Jets library #508
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You are trying to use packages that are not built (compiled) in official libraries. Generally, the "Pool" subdirectories under StRoot are excluded. You will need to have local builds of those where your jobs run. -Gene |
Hi Charles, You can work in the containerized environment using the latest star-sw code. On a rcas node you can run:
All libraries including the packages in "Pool" subdirectories are available in this environment. |
Thanks a lot! I used: singularity run /cvmfs/singularity.opensciencegrid.org/star-bnl/star-sw:latest sh but when I compiled the library (from the master branch), and execute: .x RunJetReader.C I obtain this error: MuDst chain file: Error in TROOT::Macro: macro loadMuDst.C not found in path .:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/macros: Thanks for your help, |
I see a different error
You may want to ask the maintainers of star-sw/StRoot/StJetMaker/macros/RunJetReader.C |
Thank you. The last commit on this file is on Sep 9, 2011. |
Sorry, but when I want to run a simple code in the environment what you propose me, I still obtain these kind of errors: dlopen error: /afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib/StChain.so: undefined symbol: endm |
It is very strange that your simple code picks up a library from /afs/.../SL22c/... when you run in the containerized environment. You may want to add '-e' option to 'singularity run' command... |
I have the same problem. It is very strange ... Processing StRoot/StJetMaker/macros/RunJetReader.C... |
It is impossible to load any library. |
Can you show your steps and the error? |
Singularity> cd star-sw ROOTLIBS = -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread
Processing star-sw/StRoot/StJetMaker/macros/RunJetReader.C... If I want to execute my personal program using jets library:
void StMuDstMaker::setProbabilityPidFile(const char*) ##### ATTENTION: pid table hardwired to /star-sw/StarDb/dEdxModel/PIDTableP01gl.root |
Is this still an open issue? I have not any follow-up in the past 12 months. |
Hello,
I am using the last version of git repository;
https://github.com/star-bnl/star-sw.git
When I want to execute a ROOT macro using Jet library (StRoot/StJetMaker/macros), I got this kind of error:
QAInfo:You are using STAR_LEVEL : pro, ROOT_LEVEL : 5.34.38 and node : rcas6016.rcf.bnl.gov
root.exe [0] .x RunJetReader.C
MuDst chain file: Warning in TClass::TClass: no dictionary for class StStrangeMuDst is available
Warning in TClass::TClass: no dictionary for class StStrangeAssoc is available
strangeArrayNames-arrayNames-NARRAYS = 0
Error in TUnixSystem::DynamicPathName: StSpinDbMaker[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StMCAsymMaker[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJets[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJetSkimEvent[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJetEvent[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
dlopen error: /afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib/StJetFinder.so: undefined symbol: _ZTVN7fastjet17CDFMidPointPluginE
Load Error: Failed to load Dynamic link library /afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib/StJetFinder.so
Warning: Return value of void RunJetReader() ignored RunJetReader.C:41:
About the environment, I am using these instructions:
https://drupal.star.bnl.gov/STAR/comp/sofi/tutorials/envsetup
Thanks a lot for your help,
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