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Jets library #508

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CharlesJosephNaim opened this issue Mar 20, 2023 · 12 comments
Open

Jets library #508

CharlesJosephNaim opened this issue Mar 20, 2023 · 12 comments

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@CharlesJosephNaim
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Hello,

I am using the last version of git repository;

https://github.com/star-bnl/star-sw.git

When I want to execute a ROOT macro using Jet library (StRoot/StJetMaker/macros), I got this kind of error:

QAInfo:You are using STAR_LEVEL : pro, ROOT_LEVEL : 5.34.38 and node : rcas6016.rcf.bnl.gov
root.exe [0] .x RunJetReader.C
MuDst chain file: Warning in TClass::TClass: no dictionary for class StStrangeMuDst is available
Warning in TClass::TClass: no dictionary for class StStrangeAssoc is available
strangeArrayNames-arrayNames-NARRAYS = 0
Error in TUnixSystem::DynamicPathName: StSpinDbMaker[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StMCAsymMaker[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJets[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJetSkimEvent[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJetEvent[.so | .dll | .dylib | .sl | .dl | .a] does not exist in /afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
dlopen error: /afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib/StJetFinder.so: undefined symbol: _ZTVN7fastjet17CDFMidPointPluginE
Load Error: Failed to load Dynamic link library /afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib/StJetFinder.so
Warning: Return value of void RunJetReader() ignored RunJetReader.C:41:


About the environment, I am using these instructions:

https://drupal.star.bnl.gov/STAR/comp/sofi/tutorials/envsetup

Thanks a lot for your help,

@CharlesJosephNaim CharlesJosephNaim added the bug Something isn't working label Mar 20, 2023
@genevb
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genevb commented Mar 21, 2023

You are trying to use packages that are not built (compiled) in official libraries. Generally, the "Pool" subdirectories under StRoot are excluded. You will need to have local builds of those where your jobs run.

-Gene

@genevb genevb removed the bug Something isn't working label Mar 21, 2023
@plexoos
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plexoos commented Mar 21, 2023

Hi Charles,

You can work in the containerized environment using the latest star-sw code. On a rcas node you can run:

singularity run /cvmfs/singularity.opensciencegrid.org/star-bnl/star-sw:latest sh

All libraries including the packages in "Pool" subdirectories are available in this environment.

@CharlesJosephNaim
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CharlesJosephNaim commented Mar 22, 2023

Thanks a lot!

I used:

singularity run /cvmfs/singularity.opensciencegrid.org/star-bnl/star-sw:latest sh

but when I compiled the library (from the master branch), and execute:

.x RunJetReader.C

I obtain this error:

MuDst chain file: Error in TROOT::Macro: macro loadMuDst.C not found in path .:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/macros:
dlopen error: /star-sw/.sl79_gcc485/LIB/libStarMagField.so: undefined symbol: _ZTI16TVirtualMagField
Load Error: Failed to load Dynamic link library /star-sw/.sl79_gcc485/LIB/StTpcDb.so
Warning: Return value of void RunJetReader() ignored RunJetReader.C:19:

Thanks for your help,

@plexoos
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plexoos commented Mar 22, 2023

I see a different error

git clone --depth=1 https://github.com/star-bnl/star-sw.git
singularity run /cvmfs/singularity.opensciencegrid.org/star-bnl/star-sw:latest sh
Singularity> root4star -l -b star-sw/StRoot/StJetMaker/macros/RunJetReader.C
 *** Start at Date : Tue Mar 21 21:02:38 2023
root [0]
Processing star-sw/StRoot/StJetMaker/macros/RunJetReader.C...
MuDst chain file:       strangeArrayNames-arrayNames-__NARRAYS__ = 0
dlopen error: /star-sw/.sl79_gcc485/LIB/StJetFinder.so: undefined symbol: _ZTVN7fastjet17CDFMidPointPluginE
Load Error: Failed to load Dynamic link library /star-sw/.sl79_gcc485/LIB/StJetFinder.so
Warning: Return value of void RunJetReader() ignored star-sw/StRoot/StJetMaker/macros/RunJetReader.C:41:
root [1]

You may want to ask the maintainers of star-sw/StRoot/StJetMaker/macros/RunJetReader.C

@CharlesJosephNaim
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Thank you. The last commit on this file is on Sep 9, 2011.
I guess, many people are studying jets bu using these library at STAR. I will contact the physics group which studies that... Thanks for your help,

@CharlesJosephNaim
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Sorry, but when I want to run a simple code in the environment what you propose me, I still obtain these kind of errors:

dlopen error: /afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib/StChain.so: undefined symbol: endm
Load Error: Failed to load Dynamic link library /afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib/StChain.so

@plexoos
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plexoos commented Mar 22, 2023

It is very strange that your simple code picks up a library from /afs/.../SL22c/... when you run in the containerized environment. You may want to add '-e' option to 'singularity run' command...

@CharlesJosephNaim
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I have the same problem. It is very strange ... Processing StRoot/StJetMaker/macros/RunJetReader.C...
MuDst chain file: Warning in TClass::TClass: no dictionary for class StStrangeMuDst is available
Warning in TClass::TClass: no dictionary for class StStrangeAssoc is available
strangeArrayNames-arrayNames-NARRAYS = 0
Error in TUnixSystem::DynamicPathName: StSpinDbMaker[.so | .dll | .dylib | .sl | .dl | .a] does not exist in .sl73_gcc485/lib:lib:/star/u/charlesjnaim/STAR/analysis/star-sw/.sl73_gcc485/lib:/star/u/charlesjnaim/STAR/analysis/star-sw/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:ROOT:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StMCAsymMaker[.so | .dll | .dylib | .sl | .dl | .a] does not exist in .sl73_gcc485/lib:lib:/star/u/charlesjnaim/STAR/analysis/star-sw/.sl73_gcc485/lib:/star/u/charlesjnaim/STAR/analysis/star-sw/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:ROOT:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJets[.so | .dll | .dylib | .sl | .dl | .a] does not exist in .sl73_gcc485/lib:lib:/star/u/charlesjnaim/STAR/analysis/star-sw/.sl73_gcc485/lib:/star/u/charlesjnaim/STAR/analysis/star-sw/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:ROOT:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJetSkimEvent[.so | .dll | .dylib | .sl | .dl | .a] does not exist in .sl73_gcc485/lib:lib:/star/u/charlesjnaim/STAR/analysis/star-sw/.sl73_gcc485/lib:/star/u/charlesjnaim/STAR/analysis/star-sw/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:ROOT:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
Error in TUnixSystem::DynamicPathName: StJetEvent[.so | .dll | .dylib | .sl | .dl | .a] does not exist in .sl73_gcc485/lib:lib:/star/u/charlesjnaim/STAR/analysis/star-sw/.sl73_gcc485/lib:/star/u/charlesjnaim/STAR/analysis/star-sw/lib:.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/5.34.38/.sl73_gcc485/rootdeb/lib:ROOT:/afs/rhic.bnl.gov/star/ROOT/Xrootd/prod/.sl73_gcc485/lib:/opt/star/sl73_gcc485/qt4/lib:/opt/star/sl73_gcc485/lib:.:/afs/rhic.bnl.gov/star/packages/SL22c/.sl73_gcc485/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/lib:/afs/rhic.bnl.gov/star/ROOT/36/5.34.38/.sl73_gcc485/rootdeb/cint/cint/stl
dlopen error: /direct/star+u/charlesjnaim/STAR/analysis/star-sw/.sl73_gcc485/lib/StJetFinder.so: undefined symbol: _ZTVN7fastjet17CDFMidPointPluginE
Load Error: Failed to load Dynamic link library /direct/star+u/charlesjnaim/STAR/analysis/star-sw/.sl73_gcc485/lib/StJetFinder.so
Warning: Return value of void RunJetReader() ignored StRoot/StJetMaker/macros/RunJetReader.C:41:

@CharlesJosephNaim
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It is impossible to load any library.

@plexoos
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plexoos commented Mar 24, 2023

Can you show your steps and the error?

@CharlesJosephNaim
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  1. singularity run -e /cvmfs/singularity.opensciencegrid.org/star-bnl/star-sw:latest sh

Singularity> cd star-sw
Singularity> cons
build for #.sl79_gcc485
Base OPTIM options = -O2 -g
OPTIM is enabled (the ENV NODEBUG is enabled)
The ENV variable OPTIM_OPTIONS may override the default optimize options
System: sl79_gcc485
WARNING: using cernlib from the default path
CERNLIB = /cern/pro/lib/libpawlib.a /cern/pro/lib/liblapack3.a /cern/pro/lib/libblas.a /cern/pro/lib/libpacklib.a /cern/pro/lib/libgraflib.a /cern/pro/lib/libgrafX11.a /cern/pro/lib/libpacklib.a /cern/pro/lib/libmathlib.a /cern/pro/lib/libkernlib.a -L/usr/X11R6/lib -lX11 -lnsl -lcrypt -ldl
CXX_VERSION : 4.8.5 MAJOR = 4 MINOR = 8
CXX version implies using C++/C++11 c++0x standard
Checking if OPTIM options tweak are needed for gcc V4.x series
Set final OPTIM/DEBUG options as [-O2 -g -falign-loops -falign-jumps -falign-functions]
Removing duplicate -fPIC from CFLAGS
Removing duplicate -m64 from CFLAGS
Removing duplicate -m64 from CXXFLAGS
Using /opt/software/linux-scientific7-x86_64/gcc-4.8.5/mysql-5.6.43-avo3mp5sxyxtgyq46bfbpom3tsrepdgt/bin/mysql_config
MYSQLINCDIR = /opt/software/linux-scientific7-x86_64/gcc-4.8.5/mysql-5.6.43-avo3mp5sxyxtgyq46bfbpom3tsrepdgt/include
MYSQLLIBDIR = /opt/software/linux-scientific7-x86_64/gcc-4.8.5/mysql-5.6.43-avo3mp5sxyxtgyq46bfbpom3tsrepdgt/lib
MYSQLLIB = -lmysqlclient -lpthread -lm -ldl
Using /opt/software/linux-scientific7-x86_64/gcc-4.8.5/log4cxx-0.10.0-bhejyov66yoq3ulc3pvbvikaqtq7eqch
LoggerLIBDIR = /opt/software/linux-scientific7-x86_64/gcc-4.8.5/log4cxx-0.10.0-bhejyov66yoq3ulc3pvbvikaqtq7eqch/lib
LoggerINCDIR = /opt/software/linux-scientific7-x86_64/gcc-4.8.5/log4cxx-0.10.0-bhejyov66yoq3ulc3pvbvikaqtq7eqch/include
LoggerLIBS = -llog4cxx
Using /opt/software/linux-scientific7-x86_64/gcc-4.8.5/libxml2-2.9.13-bcnwcywvldxfk3lgq2kosswuuomjr3fn/bin/xml2-config
XMLLIBDIR = /opt/software/linux-scientific7-x86_64/gcc-4.8.5/libxml2-2.9.13-bcnwcywvldxfk3lgq2kosswuuomjr3fn/lib
XMLINCDIR = /opt/software/linux-scientific7-x86_64/gcc-4.8.5/libxml2-2.9.13-bcnwcywvldxfk3lgq2kosswuuomjr3fn/include/libxml2:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/libiconv-1.16-fdvezl2dsxavxucpwqvya2klfxlu7na2/include
XMLLIBS = -lxml2 -L/opt/software/linux-scientific7-x86_64/gcc-4.8.5/zlib-1.2.12-4z3ybgoz3vlkmxd4mk37grmzbuoifusb/lib -lz -L/opt/software/linux-scientific7-x86_64/gcc-4.8.5/xz-5.2.5-2edpl3mylaok7qd3i4u3hw33rtkstoqp/lib -llzma -L/opt/software/linux-scientific7-x86_64/gcc-4.8.5/libiconv-1.16-fdvezl2dsxavxucpwqvya2klfxlu7na2/lib -liconv -lm -ldl
XMLCPPFlag =
param::defaultInclude = .sl79_gcc485/include
Repository used is /star-sw
Use default Conscript from Conscript-standard
Install includes
Set LIB = #.sl79_gcc485/LIB BIN = #.sl79_gcc485/BIN OBJ = #.sl79_gcc485/OBJ INCLUDE = #.sl79_gcc485/include LIBPATH = #.sl79_gcc485/LIB:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/mysql-5.6.43-avo3mp5sxyxtgyq46bfbpom3tsrepdgt/lib::/opt/software/lib
DirPath = /star/u/charlesjnaim/STAR/analysis/star-sw
repository = /star-sw
Repositories: "/star-sw"; Set Salt to "user"
Link #.sl79_gcc485 => /star/u/charlesjnaim/STAR/analysis/star-sw
STAR_SYS = sl79_gcc485 ROOTSYS = /opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn
CXX = g++ DEBUG = -O2 -g -falign-loops -falign-jumps -falign-functions CXXFLAGS = -m64 -fPIC -pipe -Wall -Woverloaded-virtual -std=c++0x -Wno-long-long -pthread -Wno-deprecated-declarations CPPFLAGS = -Dsl79_gcc485 -D__ROOT__
CPPPATH = #:#StRoot:#.sl79_gcc485/include:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/include
CC = gcc DEBUG = -O2 -g -falign-loops -falign-jumps -falign-functions CFLAGS = -m64 -fPIC -w -pipe -Wall -Wshadow -pthread -Wno-deprecated-declarations -Dsl79_gcc485 -D__ROOT__
FC = gfortran FDEBUG = -O2 -g -falign-loops -falign-jumps -falign-functions FPPFLAGS = -DCERNLIB_TYPE -DCERNLIB_DOUBLE -DCERNLIB_NOQUAD -DCERNLIB_LINUX -Dsl79_gcc485 FEXTEND = -ffixed-line-length-132 FFLAGS = -m64 -fd-lines-as-comments -std=legacy -fno-second-underscore -w -fno-automatic -Wall -W -Wsurprising -fPIC
FCPATH = #.sl79_gcc485/include:#asps/Simulation/geant321/include:/cern/pro/include:#
F77LD = g++ F77LDFLAGS = -m64
CERNLIBS = /cern/pro/lib/libpawlib.a /cern/pro/lib/liblapack3.a /cern/pro/lib/libblas.a /cern/pro/lib/libpacklib.a /cern/pro/lib/libgraflib.a /cern/pro/lib/libgrafX11.a /cern/pro/lib/libpacklib.a /cern/pro/lib/libmathlib.a /cern/pro/lib/libkernlib.a -L/usr/X11R6/lib -lX11 -lnsl -lcrypt -ldl
FLIBS = -lgfortran -lquadmath CLIBS = -L/usr/X11R6/lib64 -lXt -lXpm -lX11 -lm -ldl -lrt -rdynamic -pthread SYSLIBS = -lm -ldl -lrt -rdynamic -pthread
LD = g++ LDFLAGS = -m64 LIBPATH = #.sl79_gcc485/LIB:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/mysql-5.6.43-avo3mp5sxyxtgyq46bfbpom3tsrepdgt/lib::/opt/software/lib
SO = g++ SOFLAGS = -m64 -shared -Wl,-Bdynamic

ROOTLIBS = -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread
BUILD = #.sl79_gcc485 OBJ = #.sl79_gcc485/OBJ
Run Conscript-standard in StRoot/MyAnalysis for MyAnalysis
Run Conscript-standard in StRoot/StJetFinder for StJetFinder
Run Conscript-standard in StRoot/StJetMaker for StJetMaker
Run Conscript-standard in StRoot/StMuDSTMaker for StMuDSTMaker
Run Conscript-standard in StRoot/StPicoEvent for StPicoEvent
cons: "." is up-to-date.

  1. root4star -l -b star-sw/StRoot/StJetMaker/macros/RunJetReader.C

Processing star-sw/StRoot/StJetMaker/macros/RunJetReader.C...
MuDst chain file: strangeArrayNames-arrayNames-NARRAYS = 0
dlopen error: /star-sw/.sl79_gcc485/LIB/StJetFinder.so: undefined symbol: _ZTVN7fastjet17CDFMidPointPluginE
Load Error: Failed to load Dynamic link library /star-sw/.sl79_gcc485/LIB/StJetFinder.so
Warning: Return value of void RunJetReader() ignored star-sw/StRoot/StJetMaker/macros/RunJetReader.C:41:

If I want to execute my personal program using jets library:

  1. root4star -l -b star-sw/StRoot/MyAnalysis/macros/Analysis.C(1000,1,"19mu.list","./","LocalOut")
    Processing star-sw/StRoot/MyAnalysis/macros/Analysis.C(1000,1,"19mu.list","./","LocalOut")...
    strangeArrayNames-arrayNames-NARRAYS = 0
    loading of shared libraries done
    Error in TUnixSystem::DynamicPathName: MyAnalysis.so does not exist in /opt/software/linux-scientific7-x86_64/gcc-4.8.5/libiconv-1.16-fdvezl2dsxavxucpwqvya2klfxlu7na2/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/py-pyparsing-2.2.0-73rz5pzlemqjll5byqmijkxs3vlc4jeq/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/python-2.7.18-vq3ijwee4e7h55s3ey6s5wcfi7lmbkh5/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/python-3.8.13-zzglypbtlfbt635qx32pehwalrj5evfn/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/vc-0.7.4-27gvo4rofnj4kykkfr4nvukder5sh5x7/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/py-pyparsing-3.0.6-4cxjloermgv5lsqv2vbkcwozakfpwkga/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/rave-2020-08-11-idc7i6ubkhdp3hv7xaibfk5zcrtfprin/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/mysql-5.6.43-avo3mp5sxyxtgyq46bfbpom3tsrepdgt/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/log4cxx-0.10.0-bhejyov66yoq3ulc3pvbvikaqtq7eqch/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/libxml2-2.9.13-bcnwcywvldxfk3lgq2kosswuuomjr3fn/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/kitrack-01-10-star-1-hiuqmbtt3hlygsy4ewwfcexgv7sw46y4/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/kfparticle-1.1-4blnugmdnls6z6ciqp3a22tpplu3ycou/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/gsl-2.7.1-mbo4uzgm3n3pcjgdhtol6mzpcqwyfutc/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/genfit-b496504a-kz4gk43gy77sdzeddssz53qqgtg4xbhv/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/fastjet-3.3.4-cxy7ncc52qtwxslafpbukzdkl4veh46u/lib:/star-sw/.sl79_gcc485/LIB::/.singularity.d/libs:.:/star-sw/.sl79_gcc485/LIB:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/lib:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/cint/cint/stl
    Error in TROOT::Macro: macro LoadJetLibraries.C not found in path .:/star-sw/StRoot/macros:/opt/software/linux-scientific7-x86_64/gcc-4.8.5/root-5.34.38-l3v6vso6qgojm4l2ctwjojs6trbt4hpn/macros
    StError: ERROR: Cannot open list file 19mu.list
void StMuDstMaker::setProbabilityPidFile(const char*) ##### ATTENTION: pid table hardwired to /star-sw/StarDb/dEdxModel/PIDTableP01gl.root

@fgeurts
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fgeurts commented May 24, 2024

Is this still an open issue? I have not any follow-up in the past 12 months.

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