From 60ca64e830a8825f4feb40247f423331edfb41eb Mon Sep 17 00:00:00 2001 From: Mehmed Mustafa Date: Wed, 4 Dec 2024 13:22:21 +0100 Subject: [PATCH] fix: NF mets socket path param --- src/utils/operandi_utils/hpc/nhr_executor.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/utils/operandi_utils/hpc/nhr_executor.py b/src/utils/operandi_utils/hpc/nhr_executor.py index 1245f15..c1bd4aa 100644 --- a/src/utils/operandi_utils/hpc/nhr_executor.py +++ b/src/utils/operandi_utils/hpc/nhr_executor.py @@ -198,7 +198,7 @@ def cmd_nextflow_run( nf_run_command += f" --input_file_group {input_file_grp}" nf_run_command += f" --mets_path /ws_data/{mets_basename}" if use_mets_server: - nf_run_command += f" --mets_socket /ws_data/mets_server.sock" + nf_run_command += f" --mets_socket_path /ws_data/mets_server.sock" nf_run_command += f" --workspace_dir /ws_data" nf_run_command += f" --pages {ws_pages_amount}"