From 5da462e2bcaf058e9d3d7270532c3fb6a2cda230 Mon Sep 17 00:00:00 2001
From: Nabil Freij <nabil.freij@gmail.com>
Date: Wed, 7 Aug 2024 10:03:35 -0700
Subject: [PATCH 1/2] Update software versions for RTD

---
 {{ cookiecutter.package_name }}/.readthedocs.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/{{ cookiecutter.package_name }}/.readthedocs.yaml b/{{ cookiecutter.package_name }}/.readthedocs.yaml
index 790abab..3d9312d 100644
--- a/{{ cookiecutter.package_name }}/.readthedocs.yaml	
+++ b/{{ cookiecutter.package_name }}/.readthedocs.yaml	
@@ -1,9 +1,9 @@
 version: 2
 
 build:
-  os: ubuntu-22.04
+  os: ubuntu-lts-latest
   tools:
-    python: "mambaforge-4.10"
+    python: "mambaforge-latest"
   jobs:
     post_checkout:
       - git fetch --unshallow || true

From 3b70ed0ac676552570786ad6d52164f0e60bb577 Mon Sep 17 00:00:00 2001
From: Nabil Freij <nabil.freij@gmail.com>
Date: Mon, 19 Aug 2024 09:41:46 -0700
Subject: [PATCH 2/2] Add setup tools

---
 {{ cookiecutter.package_name }}/.rtd-environment.yml | 2 +-
 {{ cookiecutter.package_name }}/pyproject.toml       | 6 +++++-
 2 files changed, 6 insertions(+), 2 deletions(-)

diff --git a/{{ cookiecutter.package_name }}/.rtd-environment.yml b/{{ cookiecutter.package_name }}/.rtd-environment.yml
index 16c606e..5528179 100644
--- a/{{ cookiecutter.package_name }}/.rtd-environment.yml	
+++ b/{{ cookiecutter.package_name }}/.rtd-environment.yml	
@@ -2,6 +2,6 @@ name: {{ cookiecutter.package_name }}
 channels:
   - conda-forge
 dependencies:
-  - python=3.10
+  - python=3.12
   - pip
   - graphviz!=2.42.*,!=2.43.*
diff --git a/{{ cookiecutter.package_name }}/pyproject.toml b/{{ cookiecutter.package_name }}/pyproject.toml
index e4d8c2f..4635dd1 100644
--- a/{{ cookiecutter.package_name }}/pyproject.toml	
+++ b/{{ cookiecutter.package_name }}/pyproject.toml	
@@ -54,10 +54,14 @@ zip-safe = false
 include-package-data = true
 
 [tool.setuptools.packages.find]
+include = ["{{ cookiecutter.module_name }}*"]
 {%- if cookiecutter.enable_dynamic_dev_versions == 'y' %}
 exclude = ["{{ cookiecutter.module_name }}._dev*"]
 {%- endif %}
-
+{% if cookiecutter.use_compiled_extensions == 'y' %}
+[tool.setuptools.exclude-package-data]
+"*" = ["*.c", "*.h"]
+{% endif %}
 [tool.setuptools_scm]
 {% if cookiecutter.enable_dynamic_dev_versions == 'y' -%}
 write_to = "{{ cookiecutter.module_name }}/_version.py"