install.sh

#!/bin/bash -e
set -e

# Packages to be removed from installation:
MOCKPACKAGES="^numpy|^tensorflow|^xgboost|^mpi4py"

# Default settings:
OVERWRITE=false
BRANCH="devel"

# Parse command line input:
while getopts 'hob:' OPTION; do
	case "$OPTION" in
	h)
		echo "Usage: $(basename $0) [-h] [-o] [-b BRANCH]" >&2
		exit 1
		;;
	o)
		OVERWRITE=true
		;;
	b)
		BRANCH="$OPTARG"
		;;
	?)
		echo "Usage: $(basename $0) [-h] [-o] [-b BRANCH]" >&2
		exit 1
		;;
	esac
done
shift "$(($OPTIND -1))"

#--------------------------------------------------------------------------------------------------
for SUBPACKAGE in "photometry" "dataval" "corrections" "starclass"; do
	echo "**********************************************************"
	if [ "$OVERWRITE" = "true" ]; then
		echo "Deleting old $SUBPACKAGE..."
		rm -rf "../$SUBPACKAGE"
	fi
	if [ ! -e "../$SUBPACKAGE" ]; then
		echo "Setting up $SUBPACKAGE..."
		GIT_LFS_SKIP_SMUDGE=1 git clone https://github.com/tasoc/$SUBPACKAGE.git --branch $BRANCH --single-branch ../$SUBPACKAGE
	else
		echo "$SUBPACKAGE already exists"
	fi

	echo "****************************************************"

	# Update all the dependencies:
	echo "Processing sub-package: $SUBPACKAGE"
	if [[ ! -d "../$SUBPACKAGE" ]]; then
		echo "DOES NOT EXIST"
		exit 2
	fi

	# Pull latest Git repo:
	cd "../$SUBPACKAGE"
	git status
	git pull -f

	# Ensure numpy is the first thing to be installed:
	if [ "$SUBPACKAGE" = "photometry" ]; then
		grep "numpy" requirements.txt | xargs -I {} pip install "{}" --disable-pip-version-check
	fi

	# Install requirements for sub-package:
	grep -v -E "$MOCKPACKAGES" requirements.txt > requirements.tmp.txt
	pip install -q -r requirements.tmp.txt --disable-pip-version-check
	rm requirements.tmp.txt

	cd ../documentation
done

# Update documentation code:
echo "****************************************************"
pip install --upgrade -r requirements.txt -q --disable-pip-version-check

# Delete old builds:
rm -rf _build/

# Run Sphinx:
echo "Creating HTML documentation..."
sphinx-build -a -W --no-color -b html -d _build/doctrees . _build/html

#echo "Creating LaTeX documentation..."
#sphinx-build -a -W --no-color -b latexpdf -d _build/doctrees . _build/latexpdf
#make latexpdf SPHINXOPTS="-q" LATEXMKOPTS="-silent -quiet" LATEXOPTS="-interaction=nonstopmode"