DESCRIPTION

Package: MicrobiomeR
Title: Analyze Microbiome Data
Version: 0.6.1
Authors@R: c(
    person("Robert", "Gilmore", email = "rgilmore@umc.edu", role = c("aut", "cre")),
    person("Shaurita", "Hutchins", email = "shutchins2@umc.edu", role = "aut"))
Maintainer: Rob Gilmore <rgilmore@umc.edu>
License: MIT + file LICENSE
biocViews: Metagenomics, Microbiome, Sequencing, SystemsBiology
Description: An R package for microbiome analysis combining functions from phyloseq, metacodeR, 
    and microbiome into an easy to use and full featured microbiome analysis package.
Roxygen: list(markdown = TRUE)
Depends:
    R (>= 3.3.0)
Remotes: 
    ropensci/taxa,
    grunwaldlab/metacoder,
    joey711/phyloseq,
    microbiome/microbiome,
    jonclayden/shades
Imports:
    ape,
    biomformat,
    crayon,
    DT,
    data.table,
    diptest,
    dplyr (>= 0.8.0),
    forcats,
    ggplot2,
    ggpubr,
    ggthemes,
    ggrepel,
    glue,
    htmlwidgets,
    htmltools,
    leaflet,
    magrittr,
    metacoder,
    microbiome (>= 1.5.27),
    modes,
    openxlsx,
    phyloseq,
    plotly,
    purrr,
    rlang,
    rstudioapi,
    scales,
    scico,
    shades,
    stringr,
    taxa,
    tibble,
    tidyr,
    vegan,
    viridis,
    yaml
Suggests:
    covr,
    knitr,
    rmarkdown,
    testthat
Encoding: UTF-8
RoxygenNote: 6.1.1
LazyData: true
URL: https://github.com/vallenderlab/MicrobiomeR, https://microbiomer.vallenderlab.science/
BugReports: https://github.com/vallenderlab/MicrobiomeR/issues
VignetteBuilder: knitr
StagedInstall: false