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DESCRIPTION
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DESCRIPTION
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Package: ontoProc
Title: processing of ontologies of anatomy, cell lines, and so on
Description: Support harvesting of diverse bioinformatic ontologies,
making particular use of the ontologyIndex package on CRAN.
We provide snapshots of key ontologies for terms about
cells, cell lines, chemical compounds, and anatomy, to help
analyze genome-scale experiments, particularly cell x compound
screens. Another purpose is to strengthen development of
compelling use cases for richer interfaces to emerging ontologies.
Version: 1.13.0
Author: Vince Carey <[email protected]>
Imports: Biobase, S4Vectors, methods, AnnotationDbi, stats, utils, BiocFileCache,
shiny, graph, Rgraphviz, ontologyPlot, dplyr, magrittr, DT, igraph
Suggests: knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle,
SingleCellExperiment, celldex
Depends: R (>= 3.5), ontologyIndex
Maintainer: VJ Carey <[email protected]>
License: Artistic-2.0
LazyLoad: yes
LazyData: yes
biocViews: Infrastructure, GO
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Encoding: UTF-8