_pkgdown.yml

url: https://github.com/waldronlab/curatedMetagenomicAnalyses

pkgdown:
  as_is: false

navbar:
  left:
    - text: "Home"
      href: index.html
    - text: "Reference"
      href: reference/index.html
    - text: Analyses
      menu:
        - text: R Vignettes
        - text: Create datasets for machine learning
          href: articles/MLdatasets.html
        - text: Exploration of the liver cirrhosis dataset
          href: articles/explorecirrhosis.html
        - text: Colorectal cancer stool microbiome species prevalence (dynamic table)
          href: articles/identify_CRC_species.html
        - text: Meta-analysis of age-related microbial species using cMD3
          href: articles/Age_metaanalysis_vignette.html
        - text: Meta-analysis of sex-related microbial species using cMD3
          href: articles/Sex_metaanalysis_vignette.html
        - text: NUI Galway Metagenomics Workshop
          href: articles/NUI-Galway-Metagenomics-Workshop.html
        - text: Python Notebooks
        - text: Sex-related differences in the human microbiome using cMD3 and Python3
          href: https://github.com/waldronlab/curatedMetagenomicAnalyses/blob/main/vignettes/sexContrastMicrobiomeAnalysis.ipynb
        - text: Supplementary Materials
        - text: Installing Python dependencies in Linux (Python Notebook)
          href: https://github.com/waldronlab/curatedMetagenomicAnalyses/blob/main/vignettes/installation.ipynb
  right:
    - icon: fab fa-github fa-lg
      href: https://github.com/waldronlab/curatedMetagenomicAnalyses