From 435325933818ddc6ad652c22f859bc3985913300 Mon Sep 17 00:00:00 2001 From: Michael Macias Date: Thu, 7 Nov 2024 09:50:24 -0600 Subject: [PATCH] Bump versions for noodles 0.85.0 --- noodles-bam/CHANGELOG.md | 6 +++++- noodles-bam/Cargo.toml | 8 ++++---- noodles-bcf/CHANGELOG.md | 6 ++++++ noodles-bcf/Cargo.toml | 6 +++--- noodles-cram/CHANGELOG.md | 6 ++++++ noodles-cram/Cargo.toml | 8 ++++---- noodles-csi/CHANGELOG.md | 2 +- noodles-csi/Cargo.toml | 2 +- noodles-gff/CHANGELOG.md | 6 ++++++ noodles-gff/Cargo.toml | 4 ++-- noodles-gtf/CHANGELOG.md | 6 ++++++ noodles-gtf/Cargo.toml | 4 ++-- noodles-sam/CHANGELOG.md | 2 +- noodles-sam/Cargo.toml | 4 ++-- noodles-tabix/CHANGELOG.md | 6 ++++++ noodles-tabix/Cargo.toml | 4 ++-- noodles-util/CHANGELOG.md | 6 ++++++ noodles-util/Cargo.toml | 14 +++++++------- noodles-vcf/CHANGELOG.md | 6 ++++++ noodles-vcf/Cargo.toml | 6 +++--- noodles/CHANGELOG.md | 13 +++++++++++++ noodles/Cargo.toml | 20 ++++++++++---------- 22 files changed, 102 insertions(+), 43 deletions(-) diff --git a/noodles-bam/CHANGELOG.md b/noodles-bam/CHANGELOG.md index e0e4b49fe..31edf8539 100644 --- a/noodles-bam/CHANGELOG.md +++ b/noodles-bam/CHANGELOG.md @@ -1,6 +1,10 @@ # Changelog -## Unreleased +## 0.70.0 - 2024-11-07 + +### Changed + + * bam: Sync dependencies. ### Fixed diff --git a/noodles-bam/Cargo.toml b/noodles-bam/Cargo.toml index b9fbd49a7..6db5183d8 100644 --- a/noodles-bam/Cargo.toml +++ b/noodles-bam/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bam" -version = "0.69.0" +version = "0.70.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -24,12 +24,12 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.39.0" } -noodles-sam = { path = "../noodles-sam", version = "0.65.0" } +noodles-csi = { path = "../noodles-csi", version = "0.40.0" } +noodles-sam = { path = "../noodles-sam", version = "0.66.0" } [dev-dependencies] flate2.workspace = true -noodles-sam = { path = "../noodles-sam", version = "0.65.0", features = ["async"] } +noodles-sam = { path = "../noodles-sam", version = "0.66.0", features = ["async"] } tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] } [package.metadata.docs.rs] diff --git a/noodles-bcf/CHANGELOG.md b/noodles-bcf/CHANGELOG.md index 3987b889e..5b8a79eae 100644 --- a/noodles-bcf/CHANGELOG.md +++ b/noodles-bcf/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.64.0 - 2024-11-07 + +### Changed + + * bcf: Sync dependencies. + ## 0.63.0 - 2024-10-22 ### Changed diff --git a/noodles-bcf/Cargo.toml b/noodles-bcf/Cargo.toml index 4b3f07d24..4b89c89de 100644 --- a/noodles-bcf/Cargo.toml +++ b/noodles-bcf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bcf" -version = "0.63.0" +version = "0.64.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,8 +18,8 @@ byteorder.workspace = true indexmap.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.39.0" } -noodles-vcf = { path = "../noodles-vcf", version = "0.67.0" } +noodles-csi = { path = "../noodles-csi", version = "0.40.0" } +noodles-vcf = { path = "../noodles-vcf", version = "0.68.0" } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-cram/CHANGELOG.md b/noodles-cram/CHANGELOG.md index 23e5040a1..ba1d87996 100644 --- a/noodles-cram/CHANGELOG.md +++ b/noodles-cram/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.71.0 - 2024-11-07 + +### Changed + + * cram: Sync dependencies. + ## 0.70.0 - 2024-10-22 ### Fixed diff --git a/noodles-cram/Cargo.toml b/noodles-cram/Cargo.toml index 8b0ed422c..17cf042ac 100644 --- a/noodles-cram/Cargo.toml +++ b/noodles-cram/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-cram" -version = "0.70.0" +version = "0.71.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -23,10 +23,10 @@ bzip2 = "0.4.4" flate2.workspace = true indexmap.workspace = true md-5 = "0.10.0" -noodles-bam = { path = "../noodles-bam", version = "0.69.0" } +noodles-bam = { path = "../noodles-bam", version = "0.70.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } noodles-fasta = { path = "../noodles-fasta", version = "0.45.0" } -noodles-sam = { path = "../noodles-sam", version = "0.65.0" } +noodles-sam = { path = "../noodles-sam", version = "0.66.0" } xz2 = "0.1.6" async-compression = { version = "0.4.0", optional = true, features = ["gzip", "tokio"] } @@ -37,7 +37,7 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } libdeflater = { workspace = true, optional = true } [dev-dependencies] -noodles-sam = { path = "../noodles-sam", version = "0.65.0", features = ["async"] } +noodles-sam = { path = "../noodles-sam", version = "0.66.0", features = ["async"] } tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] } [package.metadata.docs.rs] diff --git a/noodles-csi/CHANGELOG.md b/noodles-csi/CHANGELOG.md index c9311e1d3..297530791 100644 --- a/noodles-csi/CHANGELOG.md +++ b/noodles-csi/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.40.0 - 2024-11-07 ### Changed diff --git a/noodles-csi/Cargo.toml b/noodles-csi/Cargo.toml index 51758f6ea..2ac0b1eca 100644 --- a/noodles-csi/Cargo.toml +++ b/noodles-csi/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-csi" -version = "0.39.0" +version = "0.40.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true diff --git a/noodles-gff/CHANGELOG.md b/noodles-gff/CHANGELOG.md index f71287bcc..0c2d44ee7 100644 --- a/noodles-gff/CHANGELOG.md +++ b/noodles-gff/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.39.0 - 2024-11-07 + +### Changed + + * gff: Sync dependencies. + ## 0.38.0 - 2024-09-26 ### Changed diff --git a/noodles-gff/Cargo.toml b/noodles-gff/Cargo.toml index 84784d01a..740e80d51 100644 --- a/noodles-gff/Cargo.toml +++ b/noodles-gff/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-gff" -version = "0.38.0" +version = "0.39.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -17,7 +17,7 @@ async = ["dep:futures", "dep:tokio"] indexmap.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.39.0" } +noodles-csi = { path = "../noodles-csi", version = "0.40.0" } percent-encoding.workspace = true futures = { workspace = true, optional = true, features = ["std"] } diff --git a/noodles-gtf/CHANGELOG.md b/noodles-gtf/CHANGELOG.md index c835c1bb8..78837e454 100644 --- a/noodles-gtf/CHANGELOG.md +++ b/noodles-gtf/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.34.0 - 2024-11-07 + +### Changed + + * gtf: Sync dependencies. + ## 0.33.0 - 2024-09-26 ### Changed diff --git a/noodles-gtf/Cargo.toml b/noodles-gtf/Cargo.toml index 50ec2ff12..72f2997cc 100644 --- a/noodles-gtf/Cargo.toml +++ b/noodles-gtf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-gtf" -version = "0.33.0" +version = "0.34.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -13,4 +13,4 @@ documentation = "https://docs.rs/noodles-gtf" [dependencies] noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.39.0" } +noodles-csi = { path = "../noodles-csi", version = "0.40.0" } diff --git a/noodles-sam/CHANGELOG.md b/noodles-sam/CHANGELOG.md index f18ae59d9..fe7d7313f 100644 --- a/noodles-sam/CHANGELOG.md +++ b/noodles-sam/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.66.0 - 2024-11-07 ### Added diff --git a/noodles-sam/Cargo.toml b/noodles-sam/Cargo.toml index 8abd3cd32..5a192c135 100644 --- a/noodles-sam/Cargo.toml +++ b/noodles-sam/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-sam" -version = "0.65.0" +version = "0.66.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -21,7 +21,7 @@ lexical-core.workspace = true memchr.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.39.0" } +noodles-csi = { path = "../noodles-csi", version = "0.40.0" } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-tabix/CHANGELOG.md b/noodles-tabix/CHANGELOG.md index 7895a9c9c..65fb10e80 100644 --- a/noodles-tabix/CHANGELOG.md +++ b/noodles-tabix/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.46.0 - 2024-11-07 + +### Changed + + * tabix: Sync dependencies. + ## 0.45.0 - 2024-09-26 ### Changed diff --git a/noodles-tabix/Cargo.toml b/noodles-tabix/Cargo.toml index e574c86ca..da56e2c65 100644 --- a/noodles-tabix/Cargo.toml +++ b/noodles-tabix/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-tabix" -version = "0.45.0" +version = "0.46.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,7 +18,7 @@ byteorder.workspace = true indexmap.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.39.0" } +noodles-csi = { path = "../noodles-csi", version = "0.40.0" } tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } diff --git a/noodles-util/CHANGELOG.md b/noodles-util/CHANGELOG.md index f4b1946f3..534099c54 100644 --- a/noodles-util/CHANGELOG.md +++ b/noodles-util/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.55.0 - 2024-11-07 + +### Changed + + * util: Sync dependencies. + ## 0.54.0 - 2024-10-22 ### Changed diff --git a/noodles-util/Cargo.toml b/noodles-util/Cargo.toml index 43d78c1ad..d7d931f4d 100644 --- a/noodles-util/Cargo.toml +++ b/noodles-util/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-util" -version = "0.54.0" +version = "0.55.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -40,15 +40,15 @@ variant = [ [dependencies] flate2 = { workspace = true } -noodles-bam = { path = "../noodles-bam", version = "0.69.0", optional = true } -noodles-bcf = { path = "../noodles-bcf", version = "0.63.0", optional = true } +noodles-bam = { path = "../noodles-bam", version = "0.70.0", optional = true } +noodles-bcf = { path = "../noodles-bcf", version = "0.64.0", optional = true } noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0", optional = true } noodles-core = { path = "../noodles-core", version = "0.15.0", optional = true } -noodles-cram = { path = "../noodles-cram", version = "0.70.0", optional = true } -noodles-csi = { path = "../noodles-csi", version = "0.39.0", optional = true } +noodles-cram = { path = "../noodles-cram", version = "0.71.0", optional = true } +noodles-csi = { path = "../noodles-csi", version = "0.40.0", optional = true } noodles-fasta = { path = "../noodles-fasta", version = "0.45.0", optional = true } -noodles-sam = { path = "../noodles-sam", version = "0.65.0", optional = true } -noodles-vcf = { path = "../noodles-vcf", version = "0.67.0", optional = true } +noodles-sam = { path = "../noodles-sam", version = "0.66.0", optional = true } +noodles-vcf = { path = "../noodles-vcf", version = "0.68.0", optional = true } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } diff --git a/noodles-vcf/CHANGELOG.md b/noodles-vcf/CHANGELOG.md index 019c6f034..563f6b96f 100644 --- a/noodles-vcf/CHANGELOG.md +++ b/noodles-vcf/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.68.0 - 2024-11-07 + +### Changed + + * vcf: Sync dependencies. + ## 0.67.0 - 2024-10-22 ### Added diff --git a/noodles-vcf/Cargo.toml b/noodles-vcf/Cargo.toml index f8f0d2ee7..834d8b59e 100644 --- a/noodles-vcf/Cargo.toml +++ b/noodles-vcf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-vcf" -version = "0.67.0" +version = "0.68.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,8 +18,8 @@ indexmap.workspace = true memchr.workspace = true noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0" } noodles-core = { path = "../noodles-core", version = "0.15.0" } -noodles-csi = { path = "../noodles-csi", version = "0.39.0" } -noodles-tabix = { path = "../noodles-tabix", version = "0.45.0" } +noodles-csi = { path = "../noodles-csi", version = "0.40.0" } +noodles-tabix = { path = "../noodles-tabix", version = "0.46.0" } percent-encoding.workspace = true futures = { workspace = true, optional = true, features = ["std"] } diff --git a/noodles/CHANGELOG.md b/noodles/CHANGELOG.md index 90f2c4cc0..4ddc44415 100644 --- a/noodles/CHANGELOG.md +++ b/noodles/CHANGELOG.md @@ -1,5 +1,18 @@ # Changelog +## 0.85.0 - 2024-11-07 + + * [noodles-bam 0.70.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.70.0/noodles-bam/CHANGELOG.md) + * [noodles-bcf 0.64.0](https://github.com/zaeleus/noodles/blob/noodles-bcf-0.64.0/noodles-bcf/CHANGELOG.md) + * [noodles-cram 0.71.0](https://github.com/zaeleus/noodles/blob/noodles-cram-0.71.0/noodles-cram/CHANGELOG.md) + * [noodles-csi 0.40.0](https://github.com/zaeleus/noodles/blob/noodles-csi-0.40.0/noodles-csi/CHANGELOG.md) + * [noodles-gff 0.39.0](https://github.com/zaeleus/noodles/blob/noodles-gff-0.39.0/noodles-gff/CHANGELOG.md) + * [noodles-gtf 0.34.0](https://github.com/zaeleus/noodles/blob/noodles-gtf-0.34.0/noodles-gtf/CHANGELOG.md) + * [noodles-sam 0.66.0](https://github.com/zaeleus/noodles/blob/noodles-sam-0.66.0/noodles-sam/CHANGELOG.md) + * [noodles-tabix 0.46.0](https://github.com/zaeleus/noodles/blob/noodles-tabix-0.46.0/noodles-tabix/CHANGELOG.md) + * [noodles-util 0.55.0](https://github.com/zaeleus/noodles/blob/noodles-util-0.55.0/noodles-util/CHANGELOG.md) + * [noodles-vcf 0.68.0](https://github.com/zaeleus/noodles/blob/noodles-vcf-0.68.0/noodles-vcf/CHANGELOG.md) + ## 0.84.0 - 2024-10-22 * [noodles-bam 0.69.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.69.0/noodles-bam/CHANGELOG.md) diff --git a/noodles/Cargo.toml b/noodles/Cargo.toml index 548233090..a302365f4 100644 --- a/noodles/Cargo.toml +++ b/noodles/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles" -version = "0.84.0" +version = "0.85.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -12,22 +12,22 @@ documentation = "https://docs.rs/noodles" readme = "../README.md" [dependencies] -noodles-bam = { path = "../noodles-bam", version = "0.69.0", optional = true } -noodles-bcf = { path = "../noodles-bcf", version = "0.63.0", optional = true } +noodles-bam = { path = "../noodles-bam", version = "0.70.0", optional = true } +noodles-bcf = { path = "../noodles-bcf", version = "0.64.0", optional = true } noodles-bed = { path = "../noodles-bed", version = "0.17.0", optional = true } noodles-bgzf = { path = "../noodles-bgzf", version = "0.33.0", optional = true } noodles-core = { path = "../noodles-core", version = "0.15.0", optional = true } -noodles-cram = { path = "../noodles-cram", version = "0.70.0", optional = true } -noodles-csi = { path = "../noodles-csi", version = "0.39.0", optional = true } +noodles-cram = { path = "../noodles-cram", version = "0.71.0", optional = true } +noodles-csi = { path = "../noodles-csi", version = "0.40.0", optional = true } noodles-fasta = { path = "../noodles-fasta", version = "0.45.0", optional = true } noodles-fastq = { path = "../noodles-fastq", version = "0.16.0", optional = true } -noodles-gff = { path = "../noodles-gff", version = "0.38.0", optional = true } -noodles-gtf = { path = "../noodles-gtf", version = "0.33.0", optional = true } +noodles-gff = { path = "../noodles-gff", version = "0.39.0", optional = true } +noodles-gtf = { path = "../noodles-gtf", version = "0.34.0", optional = true } noodles-htsget = { path = "../noodles-htsget", version = "0.6.0", optional = true } noodles-refget = { path = "../noodles-refget", version = "0.5.0", optional = true } -noodles-sam = { path = "../noodles-sam", version = "0.65.0", optional = true } -noodles-tabix = { path = "../noodles-tabix", version = "0.45.0", optional = true } -noodles-vcf = { path = "../noodles-vcf", version = "0.67.0", optional = true } +noodles-sam = { path = "../noodles-sam", version = "0.66.0", optional = true } +noodles-tabix = { path = "../noodles-tabix", version = "0.46.0", optional = true } +noodles-vcf = { path = "../noodles-vcf", version = "0.68.0", optional = true } [features] default = []