From 9ab4d52cda6c5d9d7345945bede0fff6d6abf140 Mon Sep 17 00:00:00 2001 From: Fabian Zills <46721498+PythonFZ@users.noreply.github.com> Date: Mon, 18 Sep 2023 11:32:45 +0200 Subject: [PATCH] Maintenance (#717) * remove pydantic dependency * poetry update * remove deprecated code * use `config.files` instead of hardcoding file path * remove `write_graph` * fix tests --- examples/docs/01_Intro.ipynb | 7 +- examples/docs/04_metrics_and_plots.ipynb | 5 +- examples/docs/05_metadata.ipynb | 10 +- examples/docs/09_lazy.ipynb | 501 ++---- poetry.lock | 1583 +++++++++-------- pyproject.toml | 2 +- .../function_wrapper/test_func_node_deps.py | 4 +- tests/integration/test_cli.py | 13 +- tests/integration/test_dvc_outs.py | 22 +- tests/integration/test_dvc_params.py | 28 +- tests/integration/test_dvc_plots.py | 6 +- tests/integration/test_example_03.py | 14 +- tests/integration/test_example_04.py | 8 +- tests/integration/test_example_05.py | 3 +- tests/integration/test_file_changes.py | 10 +- tests/integration/test_inheritance.py | 12 +- tests/integration/test_list_deps.py | 13 +- tests/integration/test_meta.py | 8 +- tests/integration/test_misc.py | 7 +- tests/integration/test_node_node.py | 26 +- tests/integration/test_project.py | 5 +- tests/unit_tests/test_zn_deps.py | 3 +- zntrack/core/node.py | 38 +- zntrack/core/nodify.py | 15 +- zntrack/fields/field.py | 6 +- zntrack/fields/meta/__init__.py | 12 +- zntrack/fields/zn/__init__.py | 8 +- zntrack/project/zntrack_project.py | 14 +- zntrack/utils/config.py | 29 +- 29 files changed, 1106 insertions(+), 1306 deletions(-) diff --git a/examples/docs/01_Intro.ipynb b/examples/docs/01_Intro.ipynb index 7e8caf31..3357a1f1 100644 --- a/examples/docs/01_Intro.ipynb +++ b/examples/docs/01_Intro.ipynb @@ -120,7 +120,7 @@ "\n", "In DVC, a pipeline is organized into multiple stages, which can be created by inheriting from ``zntrack.Node`` and implementing a ``run()`` method.\n", "\n", - "The ``run()`` method defines the logic of your pipeline stage, which will later be executed by our pipeline manager (e.g. ``dvc repro``). To integrate your new Node with DVC, you write the input script with the ``write_graph()`` command.\n", + "The ``run()`` method defines the logic of your pipeline stage, which will later be executed by our pipeline manager (e.g. ``dvc repro``).\n", "\n", "As an example, let's create a ``RandomNumber`` Node that generates a random integer between 0 and a parameterized maximum value. To do this, we'll use the zntrack module to define our Node's inputs and outputs:" ] @@ -182,10 +182,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "To add the Node to the DVC pipeline we can use `write_graph()` to create the DVC stage and let DVC run the commands for us.\n", - "DVC will call `node = RandomNumber.load()` followed by `node.run_and_save()`.\n", - "By default, ZnTrack will only build the graph without running it. We can change that by using `write_graph(run=True)`.\n", - "You can also pass other commands like `always_changed=True, external=True` to the `write_graph()` command." + "To add the Node to the DVC pipeline we can employ a context manager and use `project.run()`." ] }, { diff --git a/examples/docs/04_metrics_and_plots.ipynb b/examples/docs/04_metrics_and_plots.ipynb index 698d7927..c983f151 100644 --- a/examples/docs/04_metrics_and_plots.ipynb +++ b/examples/docs/04_metrics_and_plots.ipynb @@ -624,7 +624,10 @@ " )\n", "\n", "\n", - "ZnTrackMetric().write_graph(run=True)" + "with zntrack.Project() as project:\n", + " node = ZnTrackMetric()\n", + "\n", + "project.run()" ] }, { diff --git a/examples/docs/05_metadata.ipynb b/examples/docs/05_metadata.ipynb index 0c31e446..b3c83655 100644 --- a/examples/docs/05_metadata.ipynb +++ b/examples/docs/05_metadata.ipynb @@ -178,7 +178,10 @@ } ], "source": [ - "SleepNode().write_graph(run=True)" + "with zntrack.Project() as project:\n", + " node = SleepNode()\n", + "\n", + "project.run()" ] }, { @@ -310,7 +313,10 @@ } ], "source": [ - "SleepNodeMulti().write_graph(run=True)" + "with zntrack.Project() as project:\n", + " node = SleepNodeMulti()\n", + "\n", + "project.run()" ] }, { diff --git a/examples/docs/09_lazy.ipynb b/examples/docs/09_lazy.ipynb index 19d82b13..18a7ce85 100644 --- a/examples/docs/09_lazy.ipynb +++ b/examples/docs/09_lazy.ipynb @@ -58,7 +58,13 @@ "name": "stdout", "output_type": "stream", "text": [ - "Initialized empty Git repository in /tmp/tmp193rwpr3/.git/\n", + "Initialized empty Git repository in /tmp/tmp9xwenc20/.git/\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ "Initialized DVC repository.\n", "\n", "You can now commit the changes to git.\n", @@ -188,33 +194,23 @@ "name": "stderr", "output_type": "stream", "text": [ - "Running DVC command: 'stage add --name RandomNumber --force ...'\n" + "Running DVC command: 'stage add --name RandomNumber --force ...'\n", + "Jupyter support is an experimental feature! Please save your notebook before running this command!\n", + "Submit issues to https://github.com/zincware/ZnTrack.\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Creating 'dvc.yaml'\n", - "Adding stage 'RandomNumber' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/RandomNumber/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "Jupyter support is an experimental feature! Please save your notebook before running this command!\n", - "Submit issues to https://github.com/zincware/ZnTrack.\n", - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", "Running DVC command: 'repro'\n" ] }, @@ -222,19 +218,14 @@ "name": "stdout", "output_type": "stream", "text": [ - "Running stage 'RandomNumber':\n", - "> zntrack run src.RandomNumber.RandomNumber --name RandomNumber\n", - "Generating lock file 'dvc.lock'\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.lock\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n", - "Use `dvc push` to send your updates to remote storage.\n" + "\u0000" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "\u0000" ] } ], @@ -256,15 +247,7 @@ "name": "#%%\n" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Loading data from files for RandomNumber\n" - ] - } - ], + "outputs": [], "source": [ "random_number.load(lazy=False)" ] @@ -292,7 +275,7 @@ { "data": { "text/plain": [ - "639" + "710" ] }, "execution_count": 9, @@ -365,17 +348,10 @@ } }, "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Loading data from files for RandomNumber\n" - ] - }, { "data": { "text/plain": [ - "639" + "710" ] }, "execution_count": 11, @@ -444,287 +420,178 @@ "name": "stdout", "output_type": "stream", "text": [ - "Modifying stage 'RandomNumber' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_0 --force ...'\n" + "\u0000Running DVC command: 'stage add --name AddOne_0 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_0' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_0/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_1 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_1 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_1' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_1/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_2 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_2 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_2' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_2/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_3 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_3 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_3' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_3/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_4 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_4 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_4' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_4/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_5 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_5 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_5' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_5/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_6 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_6 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_6' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_6/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_7 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_7 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_7' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_7/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_8 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_8 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_8' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_8/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_9 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_9 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_9' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_9/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'stage add --name AddOne_10 --force ...'\n" + "Running DVC command: 'stage add --name AddOne_10 --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Adding stage 'AddOne_10' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml nodes/AddOne_10/.gitignore\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", "Running DVC command: 'repro'\n" ] }, @@ -732,73 +599,14 @@ "name": "stdout", "output_type": "stream", "text": [ - "Running stage 'RandomNumber':\n", - "> zntrack run src.RandomNumber.RandomNumber --name RandomNumber\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_0':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_0\n", - "Loading data from files for RandomNumber\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_1':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_1\n", - "Loading data from files for AddOne_0\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_2':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_2\n", - "Loading data from files for AddOne_1\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_3':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_3\n", - "Loading data from files for AddOne_2\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_4':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_4\n", - "Loading data from files for AddOne_3\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_5':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_5\n", - "Loading data from files for AddOne_4\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_6':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_6\n", - "Loading data from files for AddOne_5\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_7':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_7\n", - "Loading data from files for AddOne_6\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_8':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_8\n", - "Loading data from files for AddOne_7\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_9':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_9\n", - "Loading data from files for AddOne_8\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "Running stage 'AddOne_10':\n", - "> zntrack run src.AddOne.AddOne --name AddOne_10\n", - "Loading data from files for AddOne_9\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.lock\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n", - "Use `dvc push` to send your updates to remote storage.\n" + "\u0000" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "\u0000" ] } ], @@ -929,26 +737,7 @@ "name": "#%%\n" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Loading data from files for RandomNumber\n", - "Loading data from files for AddOne_0\n", - "Loading data from files for AddOne_1\n", - "Loading data from files for AddOne_2\n", - "Loading data from files for AddOne_3\n", - "Loading data from files for AddOne_4\n", - "Loading data from files for AddOne_5\n", - "Loading data from files for AddOne_6\n", - "Loading data from files for AddOne_7\n", - "Loading data from files for AddOne_8\n", - "Loading data from files for AddOne_9\n", - "Loading data from files for AddOne_10\n" - ] - } - ], + "outputs": [], "source": [ "add_one = AddOne.from_rev(name=\"AddOne_10\", lazy=False)" ] @@ -1005,27 +794,10 @@ } }, "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Loading data from files for RandomNumber\n", - "Loading data from files for AddOne_0\n", - "Loading data from files for AddOne_1\n", - "Loading data from files for AddOne_2\n", - "Loading data from files for AddOne_3\n", - "Loading data from files for AddOne_4\n", - "Loading data from files for AddOne_5\n", - "Loading data from files for AddOne_6\n", - "Loading data from files for AddOne_7\n", - "Loading data from files for AddOne_8\n", - "Loading data from files for AddOne_9\n" - ] - }, { "data": { "text/plain": [ - "93" + "36" ] }, "execution_count": 17, @@ -1053,7 +825,7 @@ { "data": { "text/plain": [ - "93" + "36" ] }, "execution_count": 18, @@ -1080,7 +852,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": 20, "metadata": { "collapsed": false, "jupyter": { @@ -1095,173 +867,108 @@ "name": "stderr", "output_type": "stream", "text": [ - "DeprecationWarning for write_graph: Building a graph is now done using 'with zntrack.Project() as project: ...' (Deprecated since 0.6.0)\n", - "Running DVC command: 'stage add --name RandomNumber --force ...'\n" + "Running DVC command: 'stage add --name RandomNumber --force ...'\n", + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Modifying stage 'RandomNumber' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'repro RandomNumber'\n" + "Running DVC command: 'repro'\n", + "\u0000Running DVC command: 'stage add --name RandomNumber --force ...'\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Running stage 'RandomNumber':\n", - "> zntrack run src.RandomNumber.RandomNumber --name RandomNumber\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.lock\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n", - "Use `dvc push` to send your updates to remote storage.\n", - "Loading data from files for RandomNumber\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "DeprecationWarning for write_graph: Building a graph is now done using 'with zntrack.Project() as project: ...' (Deprecated since 0.6.0)\n", - "Running DVC command: 'stage add --name RandomNumber --force ...'\n" + "\u0000" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Modifying stage 'RandomNumber' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'repro RandomNumber'\n" + "Running DVC command: 'repro'\n", + "\u0000Running DVC command: 'stage add --name RandomNumber --force ...'\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Running stage 'RandomNumber':\n", - "> zntrack run src.RandomNumber.RandomNumber --name RandomNumber\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.lock\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n", - "Use `dvc push` to send your updates to remote storage.\n", - "Loading data from files for RandomNumber\n" + "\u0000\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "DeprecationWarning for write_graph: Building a graph is now done using 'with zntrack.Project() as project: ...' (Deprecated since 0.6.0)\n", - "Running DVC command: 'stage add --name RandomNumber --force ...'\n" + "\u0000Running DVC command: 'repro'\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Modifying stage 'RandomNumber' in 'dvc.yaml'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.yaml\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n" + "\u0000" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[NbConvertApp] Converting notebook 09_lazy.ipynb to script\n", - "[NbConvertApp] Writing 5527 bytes to 09_lazy.py\n", - "Running DVC command: 'repro RandomNumber'\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Running stage 'RandomNumber':\n", - "> zntrack run src.RandomNumber.RandomNumber --name RandomNumber\n", - "Updating lock file 'dvc.lock'\n", - "\n", - "To track the changes with git, run:\n", - "\n", - "\tgit add dvc.lock\n", - "\n", - "To enable auto staging, run:\n", - "\n", - "\tdvc config core.autostage true\n", - "Use `dvc push` to send your updates to remote storage.\n", - "Loading data from files for RandomNumber\n" + "\u0000" ] } ], "source": [ - "RandomNumber(start=0, stop=5000).write_graph(run=True)\n", + "with zntrack.Project() as project:\n", + " node = RandomNumber(start=0, stop=5000)\n", + "project.run()\n", + "\n", "random_number_lazy_1 = RandomNumber.from_rev(lazy=True)\n", "random_number_1 = RandomNumber.from_rev(lazy=False)\n", "\n", - "RandomNumber(start=0, stop=5001).write_graph(run=True)\n", + "\n", + "node.stop = 5001\n", + "project.run()\n", + "\n", "random_number_lazy_2 = RandomNumber.from_rev(lazy=True)\n", "random_number_2 = RandomNumber.from_rev(lazy=False)\n", "\n", - "RandomNumber(start=0, stop=5002).write_graph(run=True)\n", + "node.stop = 5002\n", + "project.run()\n", + "\n", "random_number_lazy_3 = RandomNumber.from_rev(lazy=True)\n", "random_number_3 = RandomNumber.from_rev(lazy=False)" ] }, { "cell_type": "code", - "execution_count": 20, + "execution_count": 21, "metadata": { "collapsed": false, "jupyter": { @@ -1276,10 +983,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Loading data from files for RandomNumber\n", - "Loading data from files for RandomNumber\n", - "Loading data from files for RandomNumber\n", - "4780 == 4780 == 4780\n" + "585 == 585 == 585\n" ] } ], @@ -1295,7 +999,7 @@ }, { "cell_type": "code", - "execution_count": 21, + "execution_count": 22, "metadata": { "collapsed": false, "jupyter": { @@ -1310,7 +1014,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "1638 != 3575 != 4780\n" + "1365 != 1783 != 585\n" ] } ], @@ -1331,7 +1035,7 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": 23, "metadata": { "collapsed": false, "jupyter": { @@ -1345,6 +1049,13 @@ "source": [ "temp_dir.cleanup()" ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] } ], 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MyNode().write_graph() + with zntrack.Project() as proj: + MyNode() + proj.run() run_dvc_cmd(["repro"]) diff --git a/tests/integration/test_cli.py b/tests/integration/test_cli.py index ae44b0d4..7fadf6dd 100644 --- a/tests/integration/test_cli.py +++ b/tests/integration/test_cli.py @@ -75,8 +75,10 @@ def example_func(cfg: NodeConfig) -> NodeConfig: def test_run(proj_path, runner): - node = zntrack.examples.ParamsToOuts(params=15) - node.write_graph() + with zntrack.Project() as proj: + node = zntrack.examples.ParamsToOuts(params=15) + + proj.build() result = runner.invoke(app, ["run", "zntrack.examples.ParamsToOuts"]) assert result.exit_code == 0 @@ -92,8 +94,11 @@ def test_run_nodify(proj_path, runner): def test_run_w_name(proj_path, runner): - node = zntrack.examples.ParamsToOuts(params=15, name="TestNode") - node.write_graph() + with zntrack.Project() as proj: + node = zntrack.examples.ParamsToOuts(params=15, name="TestNode") + + proj.build() + result = runner.invoke( app, ["run", "zntrack.examples.ParamsToOuts", "--name", "TestNode"] ) diff --git a/tests/integration/test_dvc_outs.py b/tests/integration/test_dvc_outs.py index e7dc276b..b4fbf441 100644 --- a/tests/integration/test_dvc_outs.py +++ b/tests/integration/test_dvc_outs.py @@ -36,8 +36,10 @@ def run(self): def test_load_dvc_outs(proj_path): - node = SingleNode(path_x="test", name="1500") - node.write_graph(run=True) + with zntrack.Project() as proj: + node = SingleNode(path_x="test", name="1500") + + proj.build() node.load() assert node.path1 == pathlib.Path("test.json") @@ -46,9 +48,9 @@ def test_load_dvc_outs(proj_path): def test_multiple_outs(proj_path): - SingleNodeListOut( - paths=[pathlib.Path("test_1.txt"), pathlib.Path("test_2.txt")] - ).write_graph(run=True) + with zntrack.Project() as proj: + SingleNodeListOut(paths=[pathlib.Path("test_1.txt"), pathlib.Path("test_2.txt")]) + proj.run() assert pathlib.Path("test_1.txt").read_text() == "Lorem Ipsum" assert pathlib.Path("test_2.txt").read_text() == "Lorem Ipsum" @@ -70,7 +72,9 @@ def run(self): def test_SingleNodeInNodeDir(proj_path): - SingleNodeInNodeDir().write_graph(run=True) + with zntrack.Project() as proj: + SingleNodeInNodeDir() + proj.run() result = SingleNodeInNodeDir.from_rev() assert result.path == pathlib.Path("nodes", "SingleNodeInNodeDir", "test.json") @@ -78,9 +82,9 @@ def test_SingleNodeInNodeDir(proj_path): def test_SingleNodeInNodeDirMulti(proj_path): - SingleNodeInNodeDir( - path=[nwd / "test.json", "file.txt"], name="TestNode" - ).write_graph(run=True) + with zntrack.Project() as proj: + SingleNodeInNodeDir(path=[nwd / "test.json", "file.txt"], name="TestNode") + proj.run() result = SingleNodeInNodeDir.from_rev(name="TestNode") assert result.path == [pathlib.Path("nodes", "TestNode", "test.json"), "file.txt"] diff --git a/tests/integration/test_dvc_params.py b/tests/integration/test_dvc_params.py index 94776fd6..2859c6c0 100644 --- a/tests/integration/test_dvc_params.py +++ b/tests/integration/test_dvc_params.py @@ -3,7 +3,8 @@ import pytest import yaml -from zntrack import Node, dvc, zn +from zntrack import Node, Project, dvc, zn +from zntrack.utils import config class SingleNode(Node): @@ -19,11 +20,12 @@ def test_dvc_params(proj_path): file = pathlib.Path("my_params.yaml") file.write_text(yaml.safe_dump(params)) - - SingleNode(params_file=file).write_graph(run=True) + with Project() as proj: + SingleNode(params_file=file) + proj.run() assert SingleNode.from_rev().params_file == file - dvc_file = yaml.safe_load(pathlib.Path("dvc.yaml").read_text()) + dvc_file = yaml.safe_load(config.files.dvc.read_text()) assert [{"my_params.yaml": None}] == dvc_file["stages"]["SingleNode"]["params"] @@ -36,10 +38,12 @@ def test_dvc_params_list(proj_path): file1.write_text(yaml.safe_dump(params)) file2.write_text(yaml.safe_dump(params)) - SingleNode(params_file=[file1, file2]).write_graph(run=True) + with Project() as proj: + SingleNode(params_file=[file1, file2]) + proj.run() assert SingleNode.from_rev().params_file == [file1, file2] - dvc_file = yaml.safe_load(pathlib.Path("dvc.yaml").read_text()) + dvc_file = yaml.safe_load(config.files.dvc.read_text()) assert [{"my_params1.yaml": None}, {"my_params2.yaml": None}] == dvc_file["stages"][ "SingleNode" ]["params"] @@ -63,14 +67,14 @@ def test_dvc_mixed_params_list(proj_path): file1.write_text(yaml.safe_dump(params)) file2.write_text(yaml.safe_dump(params)) - MixedParams( - params_file1=[file1, file2], params_file2=file1, params={"a": 100} - ).write_graph(run=True) + with Project() as proj: + MixedParams(params_file1=[file1, file2], params_file2=file1, params={"a": 100}) + proj.run() assert MixedParams.from_rev().params_file1 == [file1, file2] assert MixedParams.from_rev().params_file2 == file1 assert MixedParams.from_rev().params == {"a": 100} - dvc_file = yaml.safe_load(pathlib.Path("dvc.yaml").read_text()) + dvc_file = yaml.safe_load(config.files.dvc.read_text()) assert [ "MixedParams", {"my_params1.yaml": None}, @@ -81,4 +85,6 @@ def test_dvc_mixed_params_list(proj_path): def test_dvc_params_error(proj_path): """Test serialized data as parameters""" with pytest.raises(ValueError): - SingleNode(params_file={"a": 100}).write_graph() + with Project() as proj: + SingleNode(params_file={"a": 100}) + proj.build() diff --git a/tests/integration/test_dvc_plots.py b/tests/integration/test_dvc_plots.py index 753e3940..496110fb 100644 --- a/tests/integration/test_dvc_plots.py +++ b/tests/integration/test_dvc_plots.py @@ -5,7 +5,7 @@ import yaml import zntrack -from zntrack.utils import run_dvc_cmd +from zntrack.utils import config, run_dvc_cmd class NodeWithPlotsDVC(zntrack.Node): @@ -106,7 +106,7 @@ def test_NodeWithPlots(proj_path, eager, cls): if not eager: node.load() - dvc_dict = yaml.safe_load((proj_path / "dvc.yaml").read_text()) + dvc_dict = yaml.safe_load((proj_path / config.files.dvc).read_text()) plots = { "x": "x", @@ -140,7 +140,7 @@ def test_NodeWithPlotsGlobal(proj_path, eager, cls): if not eager: node.load() - dvc_dict = yaml.safe_load((proj_path / "dvc.yaml").read_text()) + dvc_dict = yaml.safe_load((proj_path / config.files.dvc).read_text()) plots = { "x": "x", diff --git a/tests/integration/test_example_03.py b/tests/integration/test_example_03.py index 91fd4dcb..1a9ac55a 100644 --- a/tests/integration/test_example_03.py +++ b/tests/integration/test_example_03.py @@ -51,16 +51,14 @@ def test_repro(proj_path): """Test that a single DVC.deps() can take a list of dependencies""" project = zntrack.Project() - create_number = CreateNumbers() - create_number.write_graph() + with project: + create_number = CreateNumbers() - add_one = AddOne(inp=create_number) - add_one.write_graph() - subtract_one = SubtractOne(inp=create_number) - subtract_one.write_graph() + add_one = AddOne(inp=create_number) + subtract_one = SubtractOne(inp=create_number) - Summation(inp=[add_one, subtract_one]).write_graph() - SummationTuple(inp=(add_one, subtract_one)).write_graph() + Summation(inp=[add_one, subtract_one]) + SummationTuple(inp=(add_one, subtract_one)) project.run() diff --git a/tests/integration/test_example_04.py b/tests/integration/test_example_04.py index a4d96adf..e47f992f 100644 --- a/tests/integration/test_example_04.py +++ b/tests/integration/test_example_04.py @@ -19,10 +19,10 @@ def run(self): def test_basic_io_assertion(proj_path): """Make a simple input/output assertion test for the nodes with different names""" project = zntrack.Project() - - HelloWorld(inputs=3).write_graph() - HelloWorld(name="Test01", inputs=17).write_graph() - HelloWorld(name="Test02", inputs=42).write_graph() + with project: + HelloWorld(inputs=3) + HelloWorld(name="Test01", inputs=17) + HelloWorld(name="Test02", inputs=42) project.run() diff --git a/tests/integration/test_example_05.py b/tests/integration/test_example_05.py index 24934737..bad09c63 100644 --- a/tests/integration/test_example_05.py +++ b/tests/integration/test_example_05.py @@ -21,7 +21,8 @@ def test_stage_addition(proj_path): """Check that the dvc repro works""" project = zntrack.Project() - ComputeA(inp=np.arange(5)).write_graph() + with project: + ComputeA(inp=np.arange(5)) project.run() finished_stage = ComputeA.from_rev() diff --git a/tests/integration/test_file_changes.py b/tests/integration/test_file_changes.py index ff908064..6f9f9dc8 100644 --- a/tests/integration/test_file_changes.py +++ b/tests/integration/test_file_changes.py @@ -1,6 +1,6 @@ import pathlib -from zntrack import Node, dvc, zn +from zntrack import Node, Project, dvc, zn class ChangeParamsInRun(Node): @@ -11,7 +11,9 @@ def run(self): def test_ChangeParamsInRun(proj_path): - ChangeParamsInRun(param="correct param").write_graph(run=True) + with Project() as proj: + ChangeParamsInRun(param="correct param") + proj.run() assert ChangeParamsInRun.from_rev().param == "correct param" @@ -26,7 +28,9 @@ def run(self): def test_ChangeJsonInRun(proj_path): - ChangeJsonInRun().write_graph(run=True) + with Project() as proj: + ChangeJsonInRun() + proj.run() assert ChangeJsonInRun.from_rev().outs == pathlib.Path("correct_out.txt") diff --git a/tests/integration/test_inheritance.py b/tests/integration/test_inheritance.py index 914911a9..dd0303e5 100644 --- a/tests/integration/test_inheritance.py +++ b/tests/integration/test_inheritance.py @@ -1,6 +1,6 @@ import pytest -from zntrack import Node, zn +from zntrack import Node, Project, zn class InputsOutputs(Node): @@ -50,8 +50,9 @@ def run(self): (WriteData, WriteDataWithInit, WriteDataParentInit, WriteDataParentInitWithInit), ) def test_simple_inheritance(proj_path, cls): - node = cls(inputs="HelloWorld") - node.write_graph(run=True) + with Project() as project: + node = cls(inputs="HelloWorld") + project.run() node.load() assert node.outputs == "HelloWorld" assert cls.from_rev().outputs == "HelloWorld" @@ -65,8 +66,9 @@ def run(self): def test_WriteCustomData(proj_path): - node = WriteCustomData(inputs="Hello", custom="World") - node.write_graph(run=True) + with Project() as project: + node = WriteCustomData(inputs="Hello", custom="World") + project.run() node.load() assert node.outputs == "Hello World" assert WriteCustomData.from_rev().outputs == "Hello World" diff --git a/tests/integration/test_list_deps.py b/tests/integration/test_list_deps.py index c595ec17..712f5293 100644 --- a/tests/integration/test_list_deps.py +++ b/tests/integration/test_list_deps.py @@ -5,15 +5,14 @@ def test_list_deps(proj_path): - node1 = zntrack.examples.ParamsToOuts(params=1, name="node1") - node2 = zntrack.examples.ParamsToOuts(params=2, name="node2") + with zntrack.Project() as project: + node1 = zntrack.examples.ParamsToOuts(params=1, name="node1") + node2 = zntrack.examples.ParamsToOuts(params=2, name="node2") - data = [node1 @ "outs", node2 @ "outs"] - node3 = zntrack.examples.SumNodeAttributes(data, shift=10) + data = [node1.outs, node2.outs] + node3 = zntrack.examples.SumNodeAttributes(data, shift=10) - node1.write_graph() - node2.write_graph() - node3.write_graph() + project.run() assert dvc.cli.main(["repro"]) == 0 diff --git a/tests/integration/test_meta.py b/tests/integration/test_meta.py index 57bc1c8e..0a9ecfe5 100644 --- a/tests/integration/test_meta.py +++ b/tests/integration/test_meta.py @@ -87,11 +87,15 @@ def test_CombinedNodeWithMeta(proj_path): # should raise an error because author is missing as kwarg _ = CombinedNodeWithMeta() - CombinedNodeWithMeta(author="World").write_graph(run=True) + with zntrack.Project() as proj: + node = CombinedNodeWithMeta(author="World") + proj.run() assert CombinedNodeWithMeta.from_rev().output == "Hello World" assert CombinedNodeWithMeta.from_rev().author == "World" - CombinedNodeWithMeta(author="there").write_graph(run=True) + node.author = "there" + proj.run() + # changing the 'meta.Text' should not trigger running the model again assert CombinedNodeWithMeta.from_rev().output == "Hello World" assert CombinedNodeWithMeta.from_rev().author == "there" diff --git a/tests/integration/test_misc.py b/tests/integration/test_misc.py index 72764f05..774ba406 100644 --- a/tests/integration/test_misc.py +++ b/tests/integration/test_misc.py @@ -4,6 +4,7 @@ import znflow import zntrack +from zntrack.utils import config class NodeWithProperty(zntrack.Node): @@ -42,14 +43,14 @@ def test_SwitchNode(proj_path): NodeA(name="Node") proj.run(repro=False) - params = yaml.safe_load(pathlib.Path("params.yaml").read_text()) + params = yaml.safe_load(config.files.params.read_text()) assert params["Node"] == {"params1": 1} with zntrack.Project() as proj: NodeB(name="Node") proj.run(repro=False) - params = yaml.safe_load(pathlib.Path("params.yaml").read_text()) + params = yaml.safe_load(config.files.params.read_text()) assert params["Node"] == {"params2": 2} @@ -62,7 +63,7 @@ def test_CustomModule(proj_path): CustomModule() proj.run(repro=False) - dvc = yaml.safe_load(pathlib.Path("dvc.yaml").read_text()) + dvc = yaml.safe_load(config.files.dvc.read_text()) assert ( dvc["stages"]["CustomModule"]["cmd"] == "zntrack run zntrack.nodes.CustomModule --name CustomModule" diff --git a/tests/integration/test_node_node.py b/tests/integration/test_node_node.py index 20be8f8e..2c5c3062 100644 --- a/tests/integration/test_node_node.py +++ b/tests/integration/test_node_node.py @@ -55,15 +55,14 @@ def test_AddNodeAttributes(proj_path, eager): def test_AddNodes_legacy(proj_path): - add_numbers_a = zntrack.examples.AddNumbers(a=1, b=2, name="AddNumbersA") - add_numbers_b = zntrack.examples.AddNumbers(a=1, b=3, name="AddNumbersB") - add_nodes = zntrack.examples.AddNodeAttributes( - a=add_numbers_a @ "c", b=add_numbers_b @ "c" - ) + with zntrack.Project() as proj: + add_numbers_a = zntrack.examples.AddNumbers(a=1, b=2, name="AddNumbersA") + add_numbers_b = zntrack.examples.AddNumbers(a=1, b=3, name="AddNumbersB") + add_nodes = zntrack.examples.AddNodeAttributes( + a=add_numbers_a.c, b=add_numbers_b.c + ) - add_numbers_a.write_graph() - add_numbers_b.write_graph() - add_nodes.write_graph() + proj.build() assert not add_numbers_a.state.loaded assert not add_numbers_b.state.loaded @@ -83,13 +82,12 @@ def test_AddNodes_legacy(proj_path): def test_AddNodeAttributes_legacy(proj_path): - add_numbers_a = zntrack.examples.AddNumbers(a=1, b=2, name="AddNumbersA") - add_numbers_b = zntrack.examples.AddNumbers(a=1, b=3, name="AddNumbersB") - add_nodes = zntrack.examples.AddNodes(a=add_numbers_a, b=add_numbers_b) + with zntrack.Project() as proj: + add_numbers_a = zntrack.examples.AddNumbers(a=1, b=2, name="AddNumbersA") + add_numbers_b = zntrack.examples.AddNumbers(a=1, b=3, name="AddNumbersB") + add_nodes = zntrack.examples.AddNodes(a=add_numbers_a, b=add_numbers_b) - add_numbers_a.write_graph() - add_numbers_b.write_graph() - add_nodes.write_graph() + proj.build() assert not add_numbers_a.state.loaded assert not add_numbers_b.state.loaded diff --git a/tests/integration/test_project.py b/tests/integration/test_project.py index 87ea00eb..4f85b7e2 100644 --- a/tests/integration/test_project.py +++ b/tests/integration/test_project.py @@ -6,6 +6,7 @@ import zntrack.examples from zntrack.project import Experiment +from zntrack.utils import config class ZnNodesNode(zntrack.Node): @@ -310,12 +311,12 @@ def test_groups_nwd(tmp_path_2): "nodes", "CustomGroup", node_3.name.replace(f"CustomGroup_", "") ) - with open("zntrack.json") as f: + with open(config.files.zntrack) as f: data = json.load(f) data[node_1.name]["nwd"]["value"] = "test" data[node_2.name].pop("nwd") - with open("zntrack.json", "w") as f: + with open(config.files.zntrack, "w") as f: json.dump(data, f) assert zntrack.from_rev(node_1).nwd == pathlib.Path("test") diff --git a/tests/unit_tests/test_zn_deps.py b/tests/unit_tests/test_zn_deps.py index d1b38856..8cf9b108 100644 --- a/tests/unit_tests/test_zn_deps.py +++ b/tests/unit_tests/test_zn_deps.py @@ -3,6 +3,7 @@ import yaml import zntrack +from zntrack.utils import config class NodeWithOuts(zntrack.Node): @@ -24,7 +25,7 @@ def test_DependentNode(proj_path): proj.run(repro=False) - dvc_yaml = yaml.safe_load((proj_path / "dvc.yaml").read_text()) + dvc_yaml = yaml.safe_load((proj_path / config.files.dvc).read_text()) assert ( dvc_yaml["stages"]["DependentNode"]["cmd"] == "zntrack run test_zn_deps.DependentNode --name DependentNode" diff --git a/zntrack/core/node.py b/zntrack/core/node.py index fad0dc12..36e2b329 100644 --- a/zntrack/core/node.py +++ b/zntrack/core/node.py @@ -22,14 +22,7 @@ from zntrack import exceptions from zntrack.notebooks.jupyter import jupyter_class_to_file -from zntrack.utils import ( - NodeStatusResults, - deprecated, - file_io, - module_handler, - run_dvc_cmd, -) -from zntrack.utils.config import config +from zntrack.utils import NodeStatusResults, config, file_io, module_handler log = logging.getLogger(__name__) @@ -58,11 +51,6 @@ class NodeStatus: remote: str = None rev: str = None - def get_file_system(self) -> dvc.api.DVCFileSystem: - """Get the file system of the Node.""" - log.warning("Deprecated. Use 'state.fs' instead.") - return self.fs - @functools.cached_property def fs(self) -> dvc.api.DVCFileSystem: """Get the file system of the Node.""" @@ -88,7 +76,7 @@ def magic_patch(self) -> typing.ContextManager: original_listdir = os.listdir def _open(file, *args, **kwargs): - if file == "params.yaml": + if file == config.files.params: return original_open(file, *args, **kwargs) if not pathlib.Path(file).is_absolute(): @@ -206,7 +194,7 @@ def nwd(self) -> pathlib.Path: nwd = pathlib.Path("nodes", znflow.get_attribute(self, "name")) else: try: - with self.state.fs.open("zntrack.json") as f: + with self.state.fs.open(config.files.zntrack) as f: zntrack_config = json.load(f) nwd = zntrack_config[znflow.get_attribute(self, "name")]["nwd"] nwd = json.loads(json.dumps(nwd), cls=znjson.ZnDecoder) @@ -238,8 +226,8 @@ def save( self.convert_notebook(config.nb_name) if parameter: - file_io.clear_config_file(file="params.yaml", node_name=self.name) - file_io.clear_config_file(file="zntrack.json", node_name=self.name) + file_io.clear_config_file(file=config.files.params, node_name=self.name) + file_io.clear_config_file(file=config.files.zntrack, node_name=self.name) for attr in zninit.get_descriptors(Field, self=self): if attr.group == FieldGroup.PARAMETER and parameter: @@ -253,7 +241,7 @@ def save( ) # save the nwd to zntrack.json file_io.update_config_file( - file=pathlib.Path("zntrack.json"), + file=config.files.zntrack, node_name=self.name, value_name="nwd", value=self.nwd, @@ -328,20 +316,6 @@ def from_rev( return node - @deprecated( - "Building a graph is now done using 'with zntrack.Project() as project: ...'", - version="0.6.0", - ) - def write_graph(self, run: bool = False, **kwargs): - """Write the graph to dvc.yaml.""" - cmd = get_dvc_cmd(self, git_only_repo=True, **kwargs) - for x in cmd: - run_dvc_cmd(x) - self.save() - - if run: - run_dvc_cmd(["repro", self.name]) - def get_dvc_cmd( node: Node, diff --git a/zntrack/core/nodify.py b/zntrack/core/nodify.py index 829dc4f8..5590594b 100644 --- a/zntrack/core/nodify.py +++ b/zntrack/core/nodify.py @@ -11,8 +11,7 @@ import znjson from zntrack.notebooks.jupyter import jupyter_class_to_file -from zntrack.utils import file_io, module_handler, run_dvc_cmd -from zntrack.utils.config import config +from zntrack.utils import config, file_io, module_handler, run_dvc_cmd log = logging.getLogger(__name__) @@ -220,7 +219,7 @@ def write_dvc_command(self, node_name: str) -> list: """ script = [] if self.params is not None and len(self.params) > 0: - script += ["--params", f"params.yaml:{node_name}"] + script += ["--params", f"{config.files.params}:{node_name}"] for datacls_field in dataclasses.fields(self): if datacls_field.name == "params": continue @@ -258,14 +257,14 @@ def save_node_config_to_files(cfg: NodeConfig, node_name: str): for value_name, value in dataclasses.asdict(cfg).items(): if value_name == "params": file_io.update_config_file( - file=pathlib.Path("params.yaml"), + file=config.files.params, node_name=node_name, value_name=None, value=value, ) else: file_io.update_config_file( - file=pathlib.Path("zntrack.json"), + file=pathlib.Path(config.files.zntrack), node_name=node_name, value_name=value_name, value=value, @@ -297,9 +296,11 @@ def execute_function_call(func): """ # TODO should exec_func always load from file or check if values # are passed and then update the files? - cfg_file_content = file_io.read_file(pathlib.Path("zntrack.json"))[func.__name__] + cfg_file_content = file_io.read_file(pathlib.Path(config.files.zntrack))[ + func.__name__ + ] cfg_file_content = decode_dict(cfg_file_content) - params_file_content = file_io.read_file(pathlib.Path("params.yaml"))[func.__name__] + params_file_content = file_io.read_file(config.files.params)[func.__name__] cfg_file_content["params"] = params_file_content loaded_cfg = NodeConfig(**cfg_file_content) diff --git a/zntrack/fields/field.py b/zntrack/fields/field.py index 6f4501f9..61c160ac 100644 --- a/zntrack/fields/field.py +++ b/zntrack/fields/field.py @@ -143,7 +143,7 @@ def _write_value_to_config(self, value, instance: "Node", encoder=None): """ try: - with open("zntrack.json", "r") as f: + with open(config.files.zntrack, "r") as f: zntrack_dict = json.load(f) except FileNotFoundError: zntrack_dict = {} @@ -152,7 +152,7 @@ def _write_value_to_config(self, value, instance: "Node", encoder=None): zntrack_dict[instance.name] = {} zntrack_dict[instance.name][self.name] = value # use the __dict__ to avoid the nwd replacement - with open("zntrack.json", "w") as f: + with open(config.files.zntrack, "w") as f: json.dump(zntrack_dict, f, indent=4, cls=encoder) @@ -267,7 +267,7 @@ def save(self, instance: "Node"): if not self.use_global_plots: return - dvc_file = pathlib.Path("dvc.yaml") + dvc_file = config.files.dvc if not dvc_file.exists(): dvc_file.write_text(yaml.safe_dump({})) dvc_config = yaml.safe_load(dvc_file.read_text()) diff --git a/zntrack/fields/meta/__init__.py b/zntrack/fields/meta/__init__.py index c04f122c..9d96db30 100644 --- a/zntrack/fields/meta/__init__.py +++ b/zntrack/fields/meta/__init__.py @@ -7,7 +7,7 @@ import znjson from zntrack.fields.field import Field, FieldGroup -from zntrack.utils import file_io +from zntrack.utils import config, file_io if typing.TYPE_CHECKING: from zntrack import Node @@ -27,9 +27,9 @@ def get_files(self, instance) -> list: def save(self, instance): """Save the field to disk.""" value = getattr(instance, self.name) - if pathlib.Path("dvc.yaml").exists() and self.use_dvc_yaml: + if config.files.dvc.exists() and self.use_dvc_yaml: file_io.update_meta( - file=pathlib.Path("dvc.yaml"), + file=config.files.dvc, node_name=instance.name, data={self.name: value}, ) @@ -39,13 +39,13 @@ def save(self, instance): def get_data(self, instance: "Node") -> any: """Get the value of the field from the file.""" - if pathlib.Path("dvc.yaml").exists() and self.use_dvc_yaml: - dvc_dict = yaml.safe_load(instance.state.fs.read_text("dvc.yaml")) + if config.files.dvc.exists() and self.use_dvc_yaml: + dvc_dict = yaml.safe_load(instance.state.fs.read_text(config.files.dvc)) return dvc_dict["stages"][instance.name]["meta"].get(self.name, None) else: # load from zntrack.json zntrack_dict = json.loads( - instance.state.fs.read_text("zntrack.json"), + instance.state.fs.read_text(config.files.zntrack), ) return json.loads( json.dumps(zntrack_dict[instance.name][self.name]), cls=znjson.ZnDecoder diff --git a/zntrack/fields/zn/__init__.py b/zntrack/fields/zn/__init__.py index f7a7fab5..691f284f 100644 --- a/zntrack/fields/zn/__init__.py +++ b/zntrack/fields/zn/__init__.py @@ -21,7 +21,7 @@ LazyField, PlotsMixin, ) -from zntrack.utils import module_handler, update_key_val +from zntrack.utils import config, module_handler, update_key_val if typing.TYPE_CHECKING: from zntrack import Node @@ -115,7 +115,7 @@ def get_files(self, instance: "Node") -> list: list A list of file paths. """ - return ["params.yaml"] + return [config.files.params] def save(self, instance: "Node"): """Save the field to disk. @@ -410,7 +410,7 @@ def save(self, instance: "Node"): def get_data(self, instance: "Node") -> any: """Get the value of the field from the file.""" zntrack_dict = json.loads( - instance.state.fs.read_text("zntrack.json"), + instance.state.fs.read_text(config.files.zntrack), ) value = zntrack_dict[instance.name][self.name] @@ -540,7 +540,7 @@ def get_optional_dvc_cmd( "--metrics-no-cache" if git_only_repo else "--outs", (nwd / "node-meta.json").as_posix(), # HOW DO I MOVE THIS TO GROUP ? "--params", - f"zntrack.json:{instance.name}.{self.name}", + f"{config.files.zntrack}:{instance.name}.{self.name}", ] field_cmds = [] for attr in zninit.get_descriptors(Params, self=node): diff --git a/zntrack/project/zntrack_project.py b/zntrack/project/zntrack_project.py index 9c298b57..2d3f5b26 100644 --- a/zntrack/project/zntrack_project.py +++ b/zntrack/project/zntrack_project.py @@ -19,7 +19,7 @@ from zntrack import exceptions from zntrack.core.node import Node, get_dvc_cmd -from zntrack.utils import run_dvc_cmd +from zntrack.utils import config, run_dvc_cmd log = logging.getLogger(__name__) @@ -34,9 +34,9 @@ def _initalize(): repo.init() run_dvc_cmd(["init", "--quiet"]) # Create required files: - pathlib.Path("zntrack.json").write_text(json.dumps({})) - pathlib.Path("dvc.yaml").write_text(yaml.safe_dump({})) - pathlib.Path("params.yaml").write_text(yaml.safe_dump({})) + config.files.zntrack.write_text(json.dumps({})) + config.files.dvc.write_text(yaml.safe_dump({})) + config.files.params.write_text(yaml.safe_dump({})) repo.git.add(A=True) repo.index.commit("Project initialized.") @@ -107,9 +107,9 @@ def __post_init__(self): _initalize() if self.remove_existing_graph: # we remove the files that typically contain the graph definition - pathlib.Path("zntrack.json").unlink(missing_ok=True) - pathlib.Path("dvc.yaml").unlink(missing_ok=True) - pathlib.Path("params.yaml").unlink(missing_ok=True) + config.files.zntrack.unlink(missing_ok=True) + config.files.dvc.unlink(missing_ok=True) + config.files.params.unlink(missing_ok=True) shutil.rmtree("nodes", ignore_errors=True) def __enter__(self, *args, **kwargs): diff --git a/zntrack/utils/config.py b/zntrack/utils/config.py index 8e056018..ab5f15f8 100644 --- a/zntrack/utils/config.py +++ b/zntrack/utils/config.py @@ -7,6 +7,20 @@ from pathlib import Path +@dataclasses.dataclass(frozen=True) +class Files: + """Important File paths for ZnTrack to work. + + Notes + ----- + Currently frozen because changing the value is not tested. + """ + + zntrack: Path = Path("zntrack.json") + params: Path = Path("params.yaml") + dvc: Path = Path("dvc.yaml") + + @dataclasses.dataclass class Config: """Collection of Node configurations. @@ -49,6 +63,7 @@ class Config: interpreter: typing.Union[str, Path] = Path(sys.executable).name dvc_api: bool = True disable_operating_directory: bool = False + files: Files = dataclasses.field(default_factory=Files) _log_level: int = dataclasses.field(default=logging.INFO, init=False, repr=True) @property @@ -82,18 +97,4 @@ def updated_config(self, **kwargs) -> None: setattr(self, key, value) -@dataclasses.dataclass(frozen=True) -class Files: - """Important File paths for ZnTrack to work. - - Notes - ----- - Currently frozen because changing the value is not tested. - """ - - zntrack: Path = Path("zntrack.json") - params: Path = Path("params.yaml") - dvc: Path = Path("dvc.yaml") - - config = Config()