test: [Automatic] Constraints upgrades: numpy, pydantic
#1188
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WalkthroughThis pull request includes updates to the version specifications of multiple Python package dependencies across several requirements files. The changes primarily involve incrementing the version numbers for packages such as Changes
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Actionable comments posted: 0
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Configuration used: CodeRabbit UI
Review profile: CHILL
Files selected for processing (11)
- requirements/constraints_py3.10.txt (9 hunks)
- requirements/constraints_py3.10_pydantic_1.txt (6 hunks)
- requirements/constraints_py3.11.txt (10 hunks)
- requirements/constraints_py3.11_docs.txt (11 hunks)
- requirements/constraints_py3.11_pydantic_1.txt (7 hunks)
- requirements/constraints_py3.12.txt (10 hunks)
- requirements/constraints_py3.12_pydantic_1.txt (7 hunks)
- requirements/constraints_py3.8.txt (7 hunks)
- requirements/constraints_py3.8_pydantic_1.txt (5 hunks)
- requirements/constraints_py3.9.txt (8 hunks)
- requirements/constraints_py3.9_pydantic_1.txt (5 hunks)
Files skipped from review due to trivial changes (9)
- requirements/constraints_py3.10.txt
- requirements/constraints_py3.10_pydantic_1.txt
- requirements/constraints_py3.11.txt
- requirements/constraints_py3.12.txt
- requirements/constraints_py3.12_pydantic_1.txt
- requirements/constraints_py3.8.txt
- requirements/constraints_py3.8_pydantic_1.txt
- requirements/constraints_py3.9.txt
- requirements/constraints_py3.9_pydantic_1.txt
Additional comments not posted (12)
requirements/constraints_py3.11_docs.txt (10)
388-388: Approved: Minor version update forsphinx-autodoc-typehints.The update from
2.3.0to2.4.0is a minor version change. Given the role ofsphinx-autodoc-typehintsin automatically documenting type hints in Sphinx, it's recommended to verify that this update does not introduce any issues with the documentation generation process.
256-256: Approved: Minor version update forpydantic.The update from
2.8.2to2.9.0is a minor version change. Given the critical role ofpydanticin data validation and settings management across the project, it's crucial to review the release notes and conduct testing to ensure that this update does not introduce any compatibility issues or affect the project's data handling mechanisms.
72-72: Approved: Minor version update forfsspec.The update from
2024.6.1to2024.9.0is a minor version change. Given its use withdask, it's crucial to verify that this update maintains compatibility and does not affect file handling operations withindask.
292-292: Approved: Significant version update forpyside2.The update from
5.13.2to5.15.2.1is a significant version change. Given the role ofpyside2in providing Qt bindings for Python, it's crucial to conduct thorough testing to ensure that this update integrates smoothly with the project's GUI components without introducing compatibility issues.
231-231: Approved: Minor version update forplatformdirs.The update from
4.2.2to4.3.2is a minor version change. Given its use withjupyter-coreandpooch, it's recommended to verify that this update does not introduce any issues with directory and file management operations.
365-365: Approved: Significant version update forshiboken2.The update from
5.13.2to5.15.2.1is a significant version change. Sinceshiboken2is crucial for generating Python bindings from C++ code in the context ofpyside2, it's recommended to verify that this update does not introduce any issues with the generation of bindings or compatibility withpyside2.
124-124: Approved: Minor version update forkiwisolver.The update from
1.4.5to1.4.7is a minor version change. Sincekiwisolveris used in visualization tasks viavispy, it's recommended to verify that this update does not introduce any issues with rendering or performance.
172-172: Approved: Patch version update fornumpy.The update from
2.1.0to2.1.1is a patch version change, generally intended to fix bugs. Given the extensive use ofnumpyin the project, it's crucial to conduct thorough testing to ensure that this update integrates smoothly without affecting other dependencies.Verification successful
Approved: Patch version update for
numpy.The update from
2.1.0to2.1.1is a patch version change, generally intended to fix bugs. Given the extensive use ofnumpyin the project, it's crucial to conduct thorough testing to ensure that this update integrates smoothly without affecting other dependencies. The presence of tests that utilizenumpyshould help in verifying the update's impact.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify integration of numpy 2.1.1 across the project. echo "Please conduct comprehensive testing to ensure that the numpy 2.1.1 update integrates well with all project components that depend on numpy."Length of output: 290
Script:
#!/bin/bash # Search for all instances where numpy is imported in the codebase ast-grep --lang python --pattern 'import numpy' -A 5 ast-grep --lang python --pattern 'from numpy import $_' -A 5Length of output: 117
Script:
#!/bin/bash # Search for numpy usage in the codebase, including potential alias imports rg --ignore-case 'numpy' -A 5 # Check for numpy mentions in requirements or setup files rg --ignore-case 'numpy' requirements/ rg --ignore-case 'numpy' setup.*Length of output: 113444
267-267: Approved: Minor version update forpydantic-core.The update from
2.20.1to2.23.2is a minor version change. Sincepydantic-coreunderpinspydantic, it's recommended to verify that this update does not introduce any issues that could affect the stability of data validation and settings management in the project.
25-25: Approved: Minor version update forbuild.The update from
1.2.1to1.2.2is a minor version change, which generally includes backward-compatible bug fixes or improvements. It's recommended to check the release notes forbuildto ensure there are no unexpected changes affecting the project.requirements/constraints_py3.11_pydantic_1.txt (2)
23-23: Approved: Minor version update forbuild.The update from
1.2.1to1.2.2is a minor version change, which generally includes backward-compatible bug fixes or improvements. It's recommended to check the release notes forbuildto ensure there are no unexpected changes affecting the project.
70-70: Approved: Minor version update forfsspec.The update from
2024.6.1to2024.9.0is a minor version change. Given its use withdask, it's crucial to verify that this update maintains compatibility and does not affect file handling operations withindask.
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Files selected for processing (5)
- .github/workflows/upgrade-dependencies.yml (1 hunks)
- .readthedocs.yml (1 hunks)
- azure-pipelines.yml (1 hunks)
- requirements/constraints_py3.11_docs.txt (13 hunks)
- tox.ini (1 hunks)
Files skipped from review due to trivial changes (1)
- requirements/constraints_py3.11_docs.txt
Additional comments not posted (4)
.readthedocs.yml (1)
35-35: Addition ofpyqt6to documentation requirements approved.The inclusion of
pyqt6underextra_requirementsis approved. However, ensure compatibility with existing documentation builds and verify that all necessary dependencies forpyqt6are met in the project's environment.Run the following script to verify the compatibility of
pyqt6with the project's documentation build environment:Verification successful
Compatibility of
pyqt6with Documentation Build VerifiedThe inclusion of
pyqt6in the documentation requirements is consistent with its presence in other configuration files and managed dependencies. Ensure that the enforced version ofnapari(0.5.0) is compatible with the documentation build process. No explicit compatibility issues were found.
- Ensure compatibility of
napari 0.5.0with the documentation build.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify compatibility of `pyqt6` with the project's documentation build environment. # Test: Check for any known compatibility issues with `pyqt6`. rg --type yaml -A 5 $'pyqt6' .readthedocs.ymlLength of output: 60
Script:
#!/bin/bash # Search for references to `pyqt6` in other configuration files or scripts. rg 'pyqt6' -A 5 # Check for any specific dependencies or configurations related to `pyqt6` in the project's environment. rg 'dependencies' -A 5Length of output: 19484
.github/workflows/upgrade-dependencies.yml (1)
42-42: Question removal of--upgradeflag in dependency compilation command.The removal of the
--upgradeflag from the command that compiles Python dependencies for version 3.11 may affect dependency resolution. Please provide rationale for this change and verify its impact on the project's dependency management.Run the following script to verify the impact of removing the
--upgradeflag on dependency resolution:tox.ini (1)
136-136: Addition ofpyqt6to tox extras approved.The inclusion of
pyqt6in theextrassection is approved. However, ensure that it integrates well with the existing testing configurations and does not introduce any conflicts with other dependencies.Run the following script to verify the integration and compatibility of
pyqt6with the project's testing configurations:Verification successful
Integration of
pyqt6appears conflict-free.The addition of
pyqt6in thetox.inifile does not show any immediate conflicts with existing configurations, particularly in the context of documentation commands. However, if there are specific dependencies or configurations not visible in the current context, a manual verification is recommended to ensure full compatibility.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the integration and compatibility of `pyqt6` with the project's testing configurations. # Test: Check for any conflicts or issues with the addition of `pyqt6`. rg --type ini -A 5 $'pyqt6' tox.iniLength of output: 62
Script:
#!/bin/bash # Description: Verify the integration and compatibility of `pyqt6` with the project's testing configurations. # Test: Search for `pyqt6` in the tox.ini file and include surrounding lines for context. rg 'pyqt6' tox.ini -A 5Length of output: 111
azure-pipelines.yml (1)
80-80: Approve the update to Python 3.11 for documentation, but verify compatibility.The update to reference
requirements/constraints_py3.11_docs.txtin the documentation build process aligns with the PR's objectives to upgrade to Python 3.11. This change is crucial for ensuring that the project remains compatible with newer Python versions.However, it's important to verify that:
- The
requirements/constraints_py3.11_docs.txtfile exists and contains the correct dependencies.- The documentation builds successfully with the new Python version without any issues.
Run the following script to verify the existence and content of the new requirements file:
Additionally, consider running a test build to ensure that the documentation compiles correctly with the updated dependencies.
Verification successful
Verification successful: The requirements file for Python 3.11 exists and is correctly populated.
The
requirements/constraints_py3.11_docs.txtfile is present and contains a comprehensive list of dependencies necessary for building the documentation with Python 3.11. This supports the update in the Azure Pipelines configuration.
- Ensure to run a test build to verify that the documentation compiles correctly with these dependencies.
Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the existence and content of the new requirements file. # Test: Check if the file exists and list its contents. Expect: File exists and is not empty. if [ -f requirements/constraints_py3.11_docs.txt ]; then echo "File exists." cat requirements/constraints_py3.11_docs.txt else echo "File does not exist." fiLength of output: 8940
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## develop #1188 +/- ##
===========================================
+ Coverage 93.06% 93.07% +0.01%
===========================================
Files 209 209
Lines 32906 32906
===========================================
+ Hits 30623 30628 +5
+ Misses 2283 2278 -5 ☔ View full report in Codecov by Sentry. |
This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.
The updated packages are:
Summary by CodeRabbit
New Features
Bug Fixes
numpy,pydantic, andsetuptools, which may include important bug fixes.Chores
Documentation
pyqt6as a new dependency in the documentation build process.