AMICI v0.17.0
AMICI v0.17.0 requires Python>=3.9 and a C++17 compatible compiler
Features
- DAE support in SBML
by @FFroehlich in #2017 - SBML import: flatten SBML-comp models
by @dweindl in #2063 - Added sllh computation back to
petab_objective.simulate_petab
by @dilpath in #1548 - CMake-based Python extension builds
by @dweindl in #1992
Fixes
- Fixed CPU time tracking with multi-threading (partially)
by @dweindl in #2023 - Fixed HDF5 ambiguous overload
by @dweindl in #2031 - Fixed varying cmake libdir lib(64)/
by @dweindl in #2033 - Fixed Equilibration cpu time computation
by @plakrisenko in #2035 - CMake: add header files to library sources for generated models
by @dweindl in #2047 - CMake: Handle header-dependency of swig files
by @dweindl in #2046 - Don't try to detect conservation laws for models with Species-AssignmentRules
by @dweindl in #2056 - Smith benchmark and SBML initialization fix
by @FFroehlich in #2034 - SBML import: Fixed check for required packages
by @dweindl in #2064 - Nan observables
by @FFroehlich in #2065 - Fixed check for discontinuities for conservation law computation
by @dweindl in #2068 - Specify visualization dependencies
by @dweindl in #2070 - Fixed sympy symbol name clashes during PEtab import
by @dweindl in #2069 - Fixed ReturnData::{preeq_wrms,posteq_wrms} with FSA and check_sensi_steadystate_conv_=True
by @dweindl in #2071
Extended / updated documentation, for example:
- Jax example notebook
by @FFroehlich in #1996 - Updated Windows/MSVC installation instructions
by @Podde1 in #2053
New Contributors
Full Changelog: v0.16.1...v0.17.0
Contributors
plakrisenko, FFroehlich, and 3 other contributors