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Allow atommap rmsfit to proceed with partial atom maps #484

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Job	Run time
build-pytraj	10m 36s
Build gnu with CMake 0	8m 33s
Build gnu with CMake 1	6m 38s
Build clang with CMake 0	9m 1s
Build clang with CMake 1	6m 27s
Build gnu with CMake 0	8m 26s
Build gnu with CMake 0	21m 1s
Build gnu with CMake 0	24m 51s
Build gnu with CMake 1	18m 53s
	1h 54m 26s