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Metage2Metabo v1.5.0
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@ArnaudBelcour ArnaudBelcour released this 17 Mar 18:33
1.5.0
7ea51de

This release focuses on m2m_analysis by adding new option, new output files,more documentation and refactoring some functions and output files.

There is also a complete refactoring on the structure of m2m repository: the two big scripts (m2m_workflow.py and m2m_analysis.py) are now split in multiple scripts in two folders ( m2m and m2m_analysis).

Add

  • New option for m2m_analysis: --level to select the taxonomy level (phylum, class, order, family, genus or species) that will be used in the following steps of m2m_analysis, by default, it is phylum.
  • HTML output for m2m_analysis. HTML visualization is interactive and nodes are coloured (by key species types or taxon).
  • Error message with incorrect SBML file format.
  • Log files for m2m_analysis.
  • New tests for m2m_analysis.
  • Documentation about m2m_analysis output files.
  • Citation to eLife article.
  • Tutorial with a jupyter notebook about m2m metacom methods.

Modify

  • Add colours (by key species types or taxon) to m2m_analysis svg.
  • Modify m2m_analysis output files.
  • Replace GPL license by LGPL license.
  • Complete refactoring of m2m repository structure: m2m_workflow.py and m2m_analysis.py have been split into multiple scripts contained inside m2m and m2m_analysis folders.

Remove

  • Delete m2m_analysis stats because it is no more useful with the changes made to m2m_analysis.
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