Corrupted samples aren't removed from samples_data_*.json

[svarona]

When a sample is corrupted or has a md5 mismatch:

            "51260992": {
                "valid": false,
                "errors": [
                    "corrupted or md5 mismatch for AND42038.R2.fastq.gz"
                ],
                "warnings": []
            },

It is not being removed from samples_data_*.json:

    "51260992": {
        "fastq_r1_md5": "929afcb4017667621570efb854b918cb",
        "fastq_r2_md5": null,
        "r1_fastq_filepath": "/data/bioinfoshare/UCCT_Relecov/COD-2402-AND-HUCSC/20241128170307",
        "r2_fastq_filepath": "/data/bioinfoshare/UCCT_Relecov/COD-2402-AND-HUCSC/20241128170307",
        "sequence_file_R1_fastq": "AND42038.R1.fastq.gz",
        "sequence_file_R2_fastq": "AND42038.R2.fastq.gz"
    },

And the corrupted file is copied back into the SFTP, when neither files should be copied there, just write to the lab so that sample can be included in the next batch.