Skip to content

Commit

Permalink
New version of paper (thanks @mbarzegary)
Browse files Browse the repository at this point in the history
  • Loading branch information
@espottesmith
espottesmith committed Nov 25, 2024
1 parent 90aa012 commit 664ac7f
Show file tree
Hide file tree
Showing 2 changed files with 306 additions and 0 deletions.
306 changes: 306 additions & 0 deletions paper.crossref
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,306 @@
<?xml version="1.0" encoding="UTF-8"?>
<doi_batch xmlns="http://www.crossref.org/schema/5.3.1"
xmlns:ai="http://www.crossref.org/AccessIndicators.xsd"
xmlns:rel="http://www.crossref.org/relations.xsd"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
version="5.3.1"
xsi:schemaLocation="http://www.crossref.org/schema/5.3.1 http://www.crossref.org/schemas/crossref5.3.1.xsd">
<head>
<doi_batch_id>20241125125224-dee07d7649bec92603cda195631ac3575ef9e248</doi_batch_id>
<timestamp>20241125125224</timestamp>
<depositor>
<depositor_name>JOSS Admin</depositor_name>
<email_address>[email protected]</email_address>
</depositor>
<registrant>The Open Journal</registrant>
</head>
<body>
<journal>
<journal_metadata>
<full_title>Journal of Open Source Software</full_title>
<abbrev_title>JOSS</abbrev_title>
<issn media_type="electronic">2475-9066</issn>
<doi_data>
<doi>10.21105/joss</doi>
<resource>https://joss.theoj.org</resource>
</doi_data>
</journal_metadata>
<journal_issue>
<publication_date media_type="online">
<month>01</month>
<year>1970</year>
</publication_date>
<journal_volume>
<volume>¿VOL?</volume>
</journal_volume>
<issue>¿ISSUE?</issue>
</journal_issue>
<journal_article publication_type="full_text">
<titles>
<title>RNMC: kinetic Monte Carlo implementations for complex
reaction networks</title>
</titles>
<contributors>
<person_name sequence="first" contributor_role="author">
<given_name>Laura</given_name>
<surname>Zichi</surname>
<ORCID>https://orcid.org/0000-0003-3897-3097</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Daniel</given_name>
<surname>Barter</surname>
<ORCID>https://orcid.org/0000-0002-6408-1255</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Eric</given_name>
<surname>Sivonxay</surname>
<ORCID>https://orcid.org/0000-0002-6408-1255</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Evan Walter Clark</given_name>
<surname>Spotte-Smith</surname>
<ORCID>https://orcid.org/0000-0003-1554-197X</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Rohith Srinivaas</given_name>
<surname>Mohanakrishnan</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Emory M.</given_name>
<surname>Chan</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Kristin Aslaug</given_name>
<surname>Persson</surname>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Samuel M.</given_name>
<surname>Blau</surname>
</person_name>
</contributors>
<publication_date>
<month>01</month>
<day>01</day>
<year>1970</year>
</publication_date>
<pages>
<first_page>¿PAGE?</first_page>
</pages>
<publisher_item>
<identifier id_type="doi">N/A</identifier>
</publisher_item>
<ai:program name="AccessIndicators">
<ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
</ai:program>
<rel:program>
<rel:related_item>
<rel:description>Software archive</rel:description>
<rel:inter_work_relation relationship-type="references" identifier-type="doi">10.5281</rel:inter_work_relation>
</rel:related_item>
<rel:related_item>
<rel:description>GitHub review issue</rel:description>
<rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/openjournals</rel:inter_work_relation>
</rel:related_item>
</rel:program>
<doi_data>
<doi>N/A</doi>
<resource>https://joss.theoj.org/papers/N/A</resource>
<collection property="text-mining">
<item>
<resource mime_type="application/pdf">https://joss.theoj.org/papers/N/A.pdf</resource>
</item>
</collection>
</doi_data>
<citation_list>
<citation key="marcus1965theory">
<article_title>On the theory of electron-transfer reactions.
VI. Unified treatment for homogeneous and electrode
reactions</article_title>
<author>Marcus</author>
<journal_title>The Journal of Chemical
Physics</journal_title>
<issue>2</issue>
<volume>43</volume>
<doi>10.1063/1.1696792</doi>
<cYear>1965</cYear>
<unstructured_citation>Marcus, R. A. (1965). On the theory
of electron-transfer reactions. VI. Unified treatment for homogeneous
and electrode reactions. The Journal of Chemical Physics, 43(2),
679–701. https://doi.org/10.1063/1.1696792</unstructured_citation>
</citation>
<citation key="gillespie1977exact">
<article_title>Exact stochastic simulation of coupled
chemical reactions</article_title>
<author>Gillespie</author>
<journal_title>The Journal of Physical
Chemistry</journal_title>
<issue>25</issue>
<volume>81</volume>
<cYear>1977</cYear>
<unstructured_citation>Gillespie, D. T. (1977). Exact
stochastic simulation of coupled chemical reactions. The Journal of
Physical Chemistry, 81(25), 2340–2361.</unstructured_citation>
</citation>
<citation key="garcia2009crossing">
<article_title>Crossing the mesoscale no-mans land via
parallel kinetic monte carlo</article_title>
<author>Garcia Cardona</author>
<cYear>2009</cYear>
<unstructured_citation>Garcia Cardona, C., Wagner, G. J.,
Tikare, V., Holm, E. A., Plimpton, S. J., Thompson, A. P., Slepoy, A.,
Zhou, X. W., Battaile, C. C., &amp; Chandross, M. E. (2009). Crossing
the mesoscale no-mans land via parallel kinetic monte carlo. Sandia
National Laboratories (SNL), Albuquerque, NM,; Livermore,
CA.</unstructured_citation>
</citation>
<citation key="hoffmann2014kmos">
<article_title>Kmos: A lattice kinetic monte carlo
framework</article_title>
<author>Hoffmann</author>
<journal_title>Computer Physics
Communications</journal_title>
<issue>7</issue>
<volume>185</volume>
<doi>10.1016/j.cpc.2014.04.003</doi>
<cYear>2014</cYear>
<unstructured_citation>Hoffmann, M. J., Matera, S., &amp;
Reuter, K. (2014). Kmos: A lattice kinetic monte carlo framework.
Computer Physics Communications, 185(7), 2138–2150.
https://doi.org/10.1016/j.cpc.2014.04.003</unstructured_citation>
</citation>
<citation key="newman2021electrochemical">
<volume_title>Electrochemical systems</volume_title>
<author>Newman</author>
<cYear>2021</cYear>
<unstructured_citation>Newman, J., &amp; Balsara, N. P.
(2021). Electrochemical systems. John Wiley &amp;
Sons.</unstructured_citation>
</citation>
<citation key="spotte2022toward">
<article_title>Toward a mechanistic model of
solid–electrolyte interphase formation and evolution in lithium-ion
batteries</article_title>
<author>Spotte-Smith</author>
<journal_title>ACS Energy Letters</journal_title>
<issue>4</issue>
<volume>7</volume>
<doi>10.1021/acsenergylett.2c00517</doi>
<cYear>2022</cYear>
<unstructured_citation>Spotte-Smith, E. W. C., Kam, R. L.,
Barter, D., Xie, X., Hou, T., Dwaraknath, S., Blau, S. M., &amp;
Persson, K. A. (2022). Toward a mechanistic model of solid–electrolyte
interphase formation and evolution in lithium-ion batteries. ACS Energy
Letters, 7(4), 1446–1453.
https://doi.org/10.1021/acsenergylett.2c00517</unstructured_citation>
</citation>
<citation key="barter2023predictive">
<article_title>Predictive stochastic analysis of massive
filter-based electrochemical reaction networks</article_title>
<author>Barter</author>
<journal_title>Digital Discovery</journal_title>
<issue>1</issue>
<volume>2</volume>
<doi>10.1039/D2DD00117A</doi>
<cYear>2023</cYear>
<unstructured_citation>Barter, D., Spotte-Smith, E. W. C.,
Redkar, N. S., Khanwale, A., Dwaraknath, S., Persson, K. A., &amp; Blau,
S. M. (2023). Predictive stochastic analysis of massive filter-based
electrochemical reaction networks. Digital Discovery, 2(1), 123–137.
https://doi.org/10.1039/D2DD00117A</unstructured_citation>
</citation>
<citation key="spotte2023chemical">
<article_title>Chemical reaction networks explain gas
evolution mechanisms in Mg-ion batteries</article_title>
<author>Spotte-Smith</author>
<journal_title>Journal of the American Chemical
Society</journal_title>
<issue>22</issue>
<volume>145</volume>
<doi>10.1021/jacs.3c02222</doi>
<cYear>2023</cYear>
<unstructured_citation>Spotte-Smith, E. W. C., Blau, S. M.,
Barter, D., Leon, N. J., Hahn, N. T., Redkar, N. S., Zavadil, K. R.,
Liao, C., &amp; Persson, K. A. (2023). Chemical reaction networks
explain gas evolution mechanisms in Mg-ion batteries. Journal of the
American Chemical Society, 145(22), 12181–12192.
https://doi.org/10.1021/jacs.3c02222</unstructured_citation>
</citation>
<citation key="xia2023accelerating">
<article_title>Accelerating the design of multishell
upconverting nanoparticles through bayesian optimization</article_title>
<author>Xia</author>
<journal_title>Nano Letters</journal_title>
<issue>23</issue>
<volume>23</volume>
<doi>10.1021/acs.nanolett.3c03568</doi>
<cYear>2023</cYear>
<unstructured_citation>Xia, X., Sivonxay, E., Helms, B. A.,
Blau, S. M., &amp; Chan, E. M. (2023). Accelerating the design of
multishell upconverting nanoparticles through bayesian optimization.
Nano Letters, 23(23), 11129–11136.
https://doi.org/10.1021/acs.nanolett.3c03568</unstructured_citation>
</citation>
<citation key="chan2015combinatorial">
<article_title>Combinatorial approaches for developing
upconverting nanomaterials: High-throughput screening, modeling, and
applications</article_title>
<author>Chan</author>
<journal_title>Chemical Society Reviews</journal_title>
<issue>6</issue>
<volume>44</volume>
<doi>10.1039/C4CS00205A</doi>
<cYear>2015</cYear>
<unstructured_citation>Chan, E. M. (2015). Combinatorial
approaches for developing upconverting nanomaterials: High-throughput
screening, modeling, and applications. Chemical Society Reviews, 44(6),
1653–1679. https://doi.org/10.1039/C4CS00205A</unstructured_citation>
</citation>
<citation key="skripka2023NL">
<article_title>A generalized approach to photon avalanche
upconversion in luminescent nanocrystals</article_title>
<author>Skripka</author>
<journal_title>Nano Letters</journal_title>
<issue>15</issue>
<volume>23</volume>
<doi>10.1021/acs.nanolett.3c01955</doi>
<cYear>2023</cYear>
<unstructured_citation>Skripka, A., Lee, M., Qi, X., Pan,
J.-A., Yang, H., Lee, C., Schuck, P. J., Cohen, B. E., Jaque, D., &amp;
Chan, E. M. (2023). A generalized approach to photon avalanche
upconversion in luminescent nanocrystals. Nano Letters, 23(15),
7100–7106.
https://doi.org/10.1021/acs.nanolett.3c01955</unstructured_citation>
</citation>
<citation key="teitelboim2019energy">
<article_title>Energy transfer networks within upconverting
nanoparticles are complex systems with collective, robust, and
history-dependent dynamics</article_title>
<author>Teitelboim</author>
<journal_title>The Journal of Physical Chemistry
C</journal_title>
<issue>4</issue>
<volume>123</volume>
<doi>10.1021/acs.jpcc.9b00161</doi>
<cYear>2019</cYear>
<unstructured_citation>Teitelboim, A., Tian, B., Garfield,
D. J., Fernandez-Bravo, A., Gotlin, A. C., Schuck, P. J., Cohen, B. E.,
&amp; Chan, E. M. (2019). Energy transfer networks within upconverting
nanoparticles are complex systems with collective, robust, and
history-dependent dynamics. The Journal of Physical Chemistry C, 123(4),
2678–2689.
https://doi.org/10.1021/acs.jpcc.9b00161</unstructured_citation>
</citation>
</citation_list>
</journal_article>
</journal>
</body>
</doi_batch>
Binary file modified paper.pdf
View file
Binary file not shown.

0 comments on commit 664ac7f

Please sign in to comment.