update docstrings

demos/reanalysis-forced.ipynb

@@ -107,13 +107,6 @@
     "## Step 3: Make experiment object\n",
     "This object keeps track of your domain basics, as well as generating the hgrid, vgrid and setting up the folder structures. \n",
     "\n",
-    "After running you can have a look at your grids by calling `expt.hgrid` and `expt.vgrid`\n",
-    "\n",
-    "Plotting vgrid with marker = '.' option lets you see the spacing, or plotting \n",
-    "```python\n",
-    "np.diff(expt.hgrid.zl).plot(marker = '.')\n",
-    "```\n",
-    " shows you the vertical spacing profile.\n",
     "\n"
    ]
   },
@@ -137,6 +130,19 @@
     ")"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "After running you can have a look at your grids by calling `expt.hgrid` and `expt.vgrid`\n",
+    "\n",
+    "Plotting vgrid with marker = '.' option lets you see the spacing, or plotting \n",
+    "```python\n",
+    "np.diff(expt.vgrid.zl).plot(marker = '.')\n",
+    "```\n",
+    " shows you the vertical spacing profile."
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -153,7 +159,7 @@
     "```python\n",
     "expt.hgrid = new_hgrid\n",
     "\n",
-    "expt.hgrid.to_netcdf(f\"{inputdir}/hgrid.nc\")\n",
+    "expt.hgrid.to_netcdf(inputdir / \"hgrid.nc\")\n",
     "```"
    ]
   },
@@ -173,7 +179,7 @@
    "outputs": [],
    "source": [
     "expt.bathymetry(\n",
-    "    'PATH_TO_GEBCO_FILE', \n",
+    "    'PATH_TO_GEBCO_FILE/gebco2022.nc', \n",
     "    {\"xh\":\"lon\",\n",
     "     \"yh\":\"lat\",\n",
     "     \"elevation\":\"elevation\"}, ## Again this dictionary just maps mom6 variable names to what they are in your topog.\n",
@@ -249,7 +255,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "expt.FRE_tools((10,10))\n"
+    "expt.FRE_tools((10,10)) ## Here the tuple defines the processor layout\n"
    ]
   },
   {