Build Validation #1835
Workflow file for this run
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| name: Test-CanDIG-build | |
| run-name: Build Validation | |
| on: | |
| push: | |
| branches: [develop] | |
| pull_request: | |
| workflow_dispatch: | |
| inputs: | |
| module: | |
| type: string | |
| jobs: | |
| Build-CanDIG: | |
| runs-on: [ubuntu-latest] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Install conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| channels: conda-forge, defaults | |
| use-only-tar-bz2: true | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Setup environment file | |
| run: | | |
| cp etc/env/example.env example.env | |
| sed "s@CONDA_INSTALL=.*@CONDA_INSTALL=$CONDA@" example.env > .env | |
| sed -i "s@KEEP_TEST_DATA=false@KEEP_TEST_DATA=true@" .env | |
| - name: Display environment file | |
| run: cat ".env" | |
| - name: Add CanDIG local domain redirection to hosts | |
| run: echo "::1 candig.docker.internal" | sudo tee -a /etc/hosts | |
| - name: Install submodules | |
| run: | | |
| git submodule update --init --recursive | |
| make mkdir | |
| - name: Restore Conda environment cache | |
| id: cache-conda | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.CONDA }} | |
| key: ${{ runner.os }}-conda-${{ hashFiles('etc/venv/requirements.txt') }} | |
| - name: Install CanDIG conda environment | |
| if: ${{ steps.cache-conda.outputs.cache-hit != 'true' }} | |
| id: install-conda | |
| run: | | |
| make init-conda | |
| - name: Save Conda cache | |
| uses: actions/cache/save@v4 | |
| if: steps.install-conda.outcome == 'success' | |
| with: | |
| path: ${{ env.CONDA }} | |
| key: ${{ runner.os }}-conda-${{ hashFiles('etc/venv/requirements.txt') }} | |
| - name: Build stack | |
| run: | | |
| conda activate candig | |
| (yes || true) | make build-all | |
| - name: Integration testing | |
| run: | | |
| conda activate candig | |
| export CANDIG_DEBUG_MODE=1 | |
| make test-integration | |
| - name: Save docker container logs | |
| if: always() | |
| run: ./print_logs.sh > tmp/container_logs.txt 2>&1 | |
| - name: Save any intermediate files in containers | |
| if: always() | |
| run: | | |
| mkdir tmp/ingest | |
| docker cp candigv2_candig-ingest_1:/home/candig/tmp tmp/ingest 2>&1 | |
| mkdir tmp/index | |
| docker cp candigv2_htsget_1:/home/candig/tmp tmp/index 2>&1 | |
| - name: Save vault audit logs | |
| if: always() | |
| run: docker cp candigv2_vault-runner_1:/vault/vault-audit.log tmp/vault_audit.log 2>&1 | |
| - name: Save container and error logs as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Post-build error log | |
| path: | | |
| tmp/progress.txt | |
| tmp/container_logs.txt | |
| tmp/vault_audit.log | |
| tmp/ingest | |
| tmp/index |