Prod Bugs: Update Query/Data Portal/HTSGet #832
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* CanDIG/candig-opa merging: hotfix: site curator only relevant for curateable path/method (#798) * updating submodules * Update test_integration.py --------- Co-authored-by: github-actions <[email protected]> Co-authored-by: Daisie Huang <[email protected]> * updating submodules (#802) Co-authored-by: github-actions <[email protected]> * update katsu * AGGREGATE_COUNT_THRESHOLD=10 * Update opa * updates from UHN prod * Update candigv2-ingest * Update katsu_service * updating submodules (#804) Co-authored-by: github-actions <[email protected]> * updating submodules (#797) Co-authored-by: github-actions <[email protected]> Co-authored-by: Marion <[email protected]> * remove the confusing KEYCLOAK_PUBLIC_URL_PROD var * Some keycloak instances return a different URL for issuer * tyk templates should use KEYCLOAK_ISSUER_URL * Update Dockerfile * DIG-1665: `clean` targets delete contents, not actual folders (#806) * don't delete base folders, just their contents * Prevent `Make clean-all` from failing when tmp/containers.txt does not exist * Retrigger tests? --------- Co-authored-by: fnguyen <[email protected]> * updating submodules (#808) Co-authored-by: github-actions <[email protected]> * updating submodules (#809) Co-authored-by: github-actions <[email protected]> * updating submodules (#807) Co-authored-by: github-actions <[email protected]> * Update htsget_app * Update candigv2-ingest * Explicit error message now in keycloak_setup.sh and minor doc mods. * updating submodules (#810) Co-authored-by: github-actions <[email protected]> * Update htsget_app * update version numbers * Silly misplaced ] in keycloak_setup.sh * hotfix: attach the proxy-headers value to CANDIG_PRODUCTION_MODE (#811) * attach the proxy-headers value to CANDIG_PRODUCTION_MODE * use an env setting * pick up daisieh/proxy-headers (#813) * updating submodules (#814) Co-authored-by: github-actions <[email protected]> * set channels to conda-forge (#812) * append listen path later * Update federation * update docs * hardcode federation * Update federation * hotfix: hardcode "federation" as the listen path for the federation service (#816) * append listen path later * Update federation * update docs * hardcode federation * Update federation * FIxup federation URL --------- Co-authored-by: fnguyen <[email protected]> * Update federation * Update katsu_service * Update federation * updating submodules (#818) Co-authored-by: github-actions <[email protected]> Co-authored-by: Daisie Huang <[email protected]> * updating submodules (#819) Co-authored-by: github-actions <[email protected]> Co-authored-by: Daisie Huang <[email protected]> * hotfix: don't check your own heartbeat; respawn on error (#821) * pass in FEDERATION_SELF_SERVER_ID to federation * no quotes * Update federation * Hotfix: no default admin (#823) * updating submodules (#817) Co-authored-by: github-actions <[email protected]> Co-authored-by: Daisie Huang <[email protected]> * handle if default site admin not present --------- Co-authored-by: candigbot <[email protected]> Co-authored-by: github-actions <[email protected]> * Update htsget_app * Update query * Update federation (#828) * Update federation * Update htsget_app * Prod Bugs: Update Query/Data Portal/HTSGet (#832) * Update candig-data-portal * Update federation * Update federation * Update production-candig.md * Update production-candig.md * add FEDERATION_SELF_SERVER_ID * katsu version bump --------- Co-authored-by: candigbot <[email protected]> Co-authored-by: github-actions <[email protected]> Co-authored-by: Marion <[email protected]> Co-authored-by: fnguyen <[email protected]> Co-authored-by: David Brownlee <[email protected]>
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Fixes up bugs from Query/Data Portal/HTSGet:
CanDIG/candig-data-portal#184
CanDIG/candigv2-query#58
CanDIG/htsget_app#333