Merge pull request #160 from CanDIG/sonchau/test_action_pr

Update nested_data.py
CanDIG · Nov 30, 2023 · 01327ee · 01327ee
2 parents 2b9ede5 + cc95e7f
commit 01327ee
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Showing 4 changed files with 12 additions and 10 deletions.
diff --git a/chord_metadata_service/mohpackets/docs/schema.json b/chord_metadata_service/mohpackets/docs/schema.json
@@ -7003,11 +7003,11 @@
                         "title": "Exposures",
                         "type": "array"
                     },
-                    "comorbidities": {
+                    "comorbidities_test_test_test": {
                         "items": {
                             "$ref": "#/components/schemas/NestedComorbiditySchema"
                         },
-                        "title": "Comorbidities",
+                        "title": "Comorbidities Test Test Test",
                         "type": "array"
                     },
                     "submitter_donor_id": {
@@ -7144,7 +7144,7 @@
                     "followups",
                     "biomarkers",
                     "exposures",
-                    "comorbidities",
+                    "comorbidities_test_test_test",
                     "submitter_donor_id",
                     "program_id"
                 ],

diff --git a/chord_metadata_service/mohpackets/docs/schema.md b/chord_metadata_service/mohpackets/docs/schema.md
@@ -504,7 +504,7 @@ Base URLs:
       "pack_years_smoked": 0
     }
   ],
-  "comorbidities": [
+  "comorbidities_test_test_test": [
     {
       "prior_malignancy": "string",
       "laterality_of_prior_malignancy": "string",
@@ -5348,7 +5348,7 @@ or
       "pack_years_smoked": 0
     }
   ],
-  "comorbidities": [
+  "comorbidities_test_test_test": [
     {
       "prior_malignancy": "string",
       "laterality_of_prior_malignancy": "string",
@@ -5386,7 +5386,7 @@ DonorWithClinicalDataSchema
 |followups|[[NestedFollowUpSchema](#schemanestedfollowupschema)]|true|none|none|
 |biomarkers|[[NestedBiomarkerSchema](#schemanestedbiomarkerschema)]|true|none|none|
 |exposures|[[NestedExposureSchema](#schemanestedexposureschema)]|true|none|none|
-|comorbidities|[[NestedComorbiditySchema](#schemanestedcomorbidityschema)]|true|none|none|
+|comorbidities_test_test_test|[[NestedComorbiditySchema](#schemanestedcomorbidityschema)]|true|none|none|
 |submitter_donor_id|string|true|none|none|
 |program_id|string|true|none|none|
 |gender|any|false|none|none|

diff --git a/chord_metadata_service/mohpackets/docs/schema.yml b/chord_metadata_service/mohpackets/docs/schema.yml
@@ -899,10 +899,10 @@ components:
             type: string
           - type: 'null'
           title: Cause Of Death
-        comorbidities:
+        comorbidities_test_test_test:
           items:
             $ref: '#/components/schemas/NestedComorbiditySchema'
-          title: Comorbidities
+          title: Comorbidities Test Test Test
           type: array
         date_alive_after_lost_to_followup:
           anyOf:
@@ -984,7 +984,7 @@ components:
       - followups
       - biomarkers
       - exposures
-      - comorbidities
+      - comorbidities_test_test_test
       - submitter_donor_id
       - program_id
       title: DonorWithClinicalDataSchema

diff --git a/chord_metadata_service/mohpackets/schemas/nested_data.py b/chord_metadata_service/mohpackets/schemas/nested_data.py
@@ -211,7 +211,9 @@ class DonorWithClinicalDataSchema(ModelSchema):
     followups: List[NestedFollowUpSchema] = Field(..., alias="followup_set")
     biomarkers: List[NestedBiomarkerSchema] = Field(..., alias="biomarker_set")
     exposures: List[NestedExposureSchema] = Field(..., alias="exposure_set")
-    comorbidities: List[NestedComorbiditySchema] = Field(..., alias="comorbidity_set")
+    comorbidities_test_test_test: List[NestedComorbiditySchema] = Field(
+        ..., alias="comorbidity_set"
+    )
 
     class Config:
         model = Donor